Njord: a fishing trawler dataset

Fish is one of the main sources of food worldwide. The commercial fishing industry has a lot of different aspects to consider, ranging from sustainability to reporting. The complexity of the domain also attracts a lot of research from different fields like marine biology, fishery sciences, cybernetics, and computer science. In computer science, detection of fishing vessels via for example remote sensing and classification of fish from images or videos using machine learning or other analysis methods attracts growing attention. Surprisingly, little work has been done that considers what is happening on board the fishing vessels. On the deck of the boats, a lot of data and important information are generated with potential applications, such as automatic detection of accidents or automatic reporting of fish caught. This paper presents Njord, a fishing trawler dataset consisting of surveillance videos from a modern off-shore fishing trawler at sea. The main goal of this dataset is to show the potential and possibilities that analysis of such data can provide. In addition to the data, we provide a baseline analysis and discuss several possible research questions this dataset could help answer

Forskning og udvikling i økologisk ægproduktion

Nærværende rapport er en beskrivelse og diskussion af forskningsprojekter gennemført under FØJO i årene 1996-1999. I korthed vidste forskningen følgende: Opdrætning og belægning Det har vist sig at konventionel opdræt giver en del problemer og der er anvendt en del kræfter på at belyse konsekvensen af forskellige opdrætningsmetoder, herunder lysintensitet, adgang til udeareal, opdræt på blivende sted eller flytning. Konklusionen fra disse undersøgelser er, at: Tidlig adgang til udearealet giver øget brug af udearealet senere, tendens til færre gulvæg og signifikant færre snavsede æg Opdrætning i hytte giver større kropsvægt, større ægvægt, færre gulvæg, færre snavsede æg og bedre fjerdragt end opdrætning under konventionelle forhold. Lav belægning i æglægningsperioden med 3.5 høner pr. m2 giver højere læggeprocent, bedre fodereffektivitet, tendens til færre gulvæg og signifikant færre snavsede æg samt bedre fjerdragt, dog kun hos de høner, der var opdrættet i stald Avl og selektion Avlsmaterialets kvalitet har været en vigtig del af forskningsarbejdet, dels fordi der kun er få avlsvirksomheder tilbage, der sælger afstamninger med en vis æglægningskapacitet, dels fordi disse afstamninger primært er fremavlet med sigte på burægsproduktion. Den konklusion, der kan drages af de genetiske studier er, at såfremt fjerpilningsadfærd inddrages i et passende selektionsprogram, vil et af de største velfærdsproblemer inden for ægproduktion blive løst. Parasitter Et problem, som møder den økologiske høne, er indvoldsorme. Mulighederne for at forebygge på dette område er i projektet blevet undersøgt i forskellige sammenhænge. Konklusionen er, at man må regne med, at indvoldorme altid vil være til stede i en vis udstrækning, når besætningen har adgang til udendørs arealer. Fuldstændig udryddelse er ikke mulig. I dag findes der kun konventionelle antiparasitære midler til behandling og kontrol af parasitære infektioner. Disse midler anses ikke for at være anvendelige, da tilbageholdelsestiderne er lange. På sigt bør man avlsmæssigt arbejde mod at etablere specielle racer til udendørsproduktion som er resistente mod parasitære og andre infektioner. Grovfoder Forsøg med tildeling af grovfoder har haft en positiv effekt på ægproduktion, forbrug af fuldfoder og der var en markant lavere dødelighed. Der kan iagttages mindre fjerpilning og en forbedring af fjerdragtens kvalitet, når der gives grovfoder. Endelig kunne der hvad angår tarmsundhed konstateres en øget kråseaktivitet og øget fermentering i blindtarmene samt lavere antal af coliforme bakterier, laktose negative bakterier og enterokokker. På temamødet på Forskningscenter Foulum, berettede flere landmænd om græsrodsprojekterne, og deres resultater og erfaringer er beskrevet i denne rapport. I sit afsnit vurderer Arne Bæk Jensen bl.a., at det økologiske opdræt og anvendelsen af kyllingemødre har været en succes idet: Kyllingerne har levet under forhold, som har givet en forøgelse af dyrevelfærden. Indeklimaet i opdrætsstalden har været godt som følge af et tørt gulv Energiforbruget er blevet reduceret Den tidlige prægning har haft sin virkning I æglægningsstalden sidder ca. 90 pct. af hønerne på siddepindene om natten efter ca. 14 dage Noget tyder på, at de høner, som ikke kommer på pindene om natten, også lægger deres æg på gulvet, hvor de overnatter. Hønerne på siddepindene har en bedre redesøgningsadfærd Ved indsætning ligger hønerne et pænt stykke over normen for væg

Ecological interactions between farmed Atlantic salmon and wild Atlantic cod populations in Norway: A review of risk sources and knowledge gaps

Aquaculture provides an important and expanding source of protein rich and healthy food to the world. However, to minimize environmental harm from aquaculture, interactions with wild fish communities need to be thoroughly assessed. Here, we characterize the existing knowledge pertaining to such interactions, exemplified with Atlantic salmon (Salmo salar) farming in open net pens along the Norwegian coast and potential consequences for wild Atlantic cod (Gadus morhua) populations. Importantly, the wild cod fishery also provides a protein rich, high quality food source with high economic value. We identify seven risk sources that may affect behaviour, physiology, and survival in wild cod. Of particular importance is the large amount of waste feed that causes wild fish to aggregate around farms, thereby altering a multitude of ecological interactions including predation and disease transmission. Moreover, altered food quality in pellets may alter physiological processes and cause mortality to vulnerable life-stages in wild cod. More research is needed on mechanisms and thresholds for harm. As the most important cod fisheries are found in northern Norway, where climate change also is rapid, we expect stronger and potentially more harmful interactions between fish farming and wild cod fisheries as aquaculture continues to expand. We hope that our analysis will inspire further research, on farmed salmon and wild cod interactions, but also on aquaculture and wild fish interactions in general. Such research is fundamental for the development of management systems that can reduce the impact of aquaculture on fisheries and the environment.The article was written with support from NRC grant no. 294631: SALCOD—Impacts of salmon farming on Atlantic cod stocks, and by the Fram Research Program CLEAN

Integrated monitoring of mola mola behaviour in space and time

Over the last decade, ocean sunfish movements have been monitored worldwide using various satellite tracking methods. This study reports the near-real time monitoring of finescale (< 10 m) behaviour of sunfish. The study was conducted in southern Portugal in May 2014 and involved satellite tags and underwater and surface robotic vehicles to measure both the movements and the contextual environment of the fish. A total of four individuals were tracked using custom-made GPS satellite tags providing geolocation estimates of fine-scale resolution. These accurate positions further informed sunfish areas of restricted search (ARS), which were directly correlated to steep thermal frontal zones. Simultaneously, and for two different occasions, an Autonomous Underwater Vehicle (AUV) videorecorded the path of the tracked fish and detected buoyant particles in the water column. Importantly, the densities of these particles were also directly correlated to steep thermal gradients. Thus, both sunfish foraging behaviour (ARS) and possibly prey densities, were found to be influenced by analogous environmental conditions. In addition, the dynamic structure of the water transited by the tracked individuals was described by a Lagrangian modelling approach. The model informed the distribution of zooplankton in the region, both horizontally and in the water column, and the resultant simulated densities positively correlated with sunfish ARS behaviour estimator (r(s) = 0.184, p < 0.001). The model also revealed that tracked fish opportunistically displace with respect to subsurface current flow. Thus, we show how physical forcing and current structure provide a rationale for a predator's finescale behaviour observed over a two weeks in May 2014

New genetic loci link adipose and insulin biology to body fat distribution.

Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our understanding of the genetic basis of body fat distribution and its molecular links to cardiometabolic traits, here we conduct genome-wide association meta-analyses of traits related to waist and hip circumferences in up to 224,459 individuals. We identify 49 loci (33 new) associated with waist-to-hip ratio adjusted for body mass index (BMI), and an additional 19 loci newly associated with related waist and hip circumference measures (P < 5 × 10(-8)). In total, 20 of the 49 waist-to-hip ratio adjusted for BMI loci show significant sexual dimorphism, 19 of which display a stronger effect in women. The identified loci were enriched for genes expressed in adipose tissue and for putative regulatory elements in adipocytes. Pathway analyses implicated adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution, providing insight into potential pathophysiological mechanisms

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead