Exposure of individual harbour seals (Phoca vitulina) and waters surrounding protected habitats to acoustic deterrent noise from aquaculture

This work was funded by the European Social Fund and Scottish Funding Council as part of Developing Scotland's Workforce in the Scotland 2014–2020 European Structural and Investment Fund Programme. NDM and AF were funded by the Centre for Environment, Fisheries and Aquaculture Science (Cefas). Funding for the seal tagging was provided by the Scottish Government to the Sea Mammal Research Unit (SMRU) as part of the Marine Mammal Scientific Support Program MMSS/002/15, with additional resources from the Natural Environment Research Council (grant numbers NE/J004251/1 and SMRU1001).1. Pinniped depredation at aquaculture sites is a globally recognized problem. To mitigate depredation, the aquaculture sector uses acoustic deterrent devices (ADDs) as a non-lethal alternative to shooting pinnipeds interacting with caged finfish. However, it is unclear whether sound emissions from ADDs have the potential to also impact non-target pinnipeds at spatial scales relevant to populations. 2. Global Positioning System (GPS) tracking data from seven harbour seals tagged in a non-aquaculture context, on the west coast of Scotland, in 2017 were combined with modelled maps of ADD noise to quantify sound exposure and estimate the potential for auditory impairment. The acoustic model applied an energy flux approach across the main frequency range of ADDs (2–40 kHz). Predictions of temporary and permanent auditory threshold shifts were made using seal location data and published noise exposure criteria. The acoustic exposure of waters (10-km buffers) surrounding protected habitats (i.e. designated haul outs and Special Areas of Conservation (SACs)) on the west coast of Scotland was also assessed. 3. All tagged seals and waters surrounding 51 of 56 protected sites were predicted to be exposed to ADD noise exceeding median ambient sound levels. Temporary auditory impairment was predicted to occur in one of the seven tagged harbour seals and across 1.7% of waters surrounding protected habitats over a 24-hour period, when assuming a 100% ADD duty cycle. 4. Although the predicted risk of auditory impairment appears to be relatively low, these findings suggest that harbour seals inhabiting inshore waters off western Scotland are routinely exposed to ADD noise that exceeds median ambient sound levels. This chronic exposure risks negative consequences for individual harbour seals among the wider population in this region. The use of ADDs to mitigate pinniped depredation should be carefully considered to reduce unintended habitat-wide impacts on non-target species, including pinnipeds that are not specifically interacting with aquaculture.Publisher PDFPeer reviewe

Auditory impairment from acoustic seal deterrents predicted for harbour porpoises in a marine protected area

Management interventions to reduce human–wildlife conflict can have unintended consequences for non-target species. Acoustic deterrent devices (ADDs) are used globally by the aquaculture sector. However, the potential for these sound emissions to impact non-target species, such as cetaceans, has not yet been quantified at population relevant spatial scales. To better understand the extent of potential impacts on cetaceans, such as harbour porpoises, we used acoustic modelling to investigate levels of ADD noise throughout the west coast of Scotland and across a Special Area of Conservation (SAC) for this species. Using an energy-flux acoustic propagation model and data on aquaculture sites known to be using ADDs, we predicted the spatial extent of ADD noise on the Scottish west coast from 1 February 2017 to 31 January 2018. Noise maps were produced to determine the risk of auditory impairment for harbour porpoises under a range of scenarios which assumed single or multiple ADDs and simultaneous use across all sites. The acoustic propagation model performed well when tested against field measurements up to 5 km, with 98% of sound exposure level (SEL) predictions within ±10% of the measurements. Predictions of SELs over a 24-hr period suggested extensive temporary hearing loss zones (median radius: ~28 km) for harbour porpoises around aquaculture sites. Assuming a single device at each site, 23% of the harbour porpoise SAC was predicted to be exposed to ADD noise sufficient to induce a temporary threshold shift, and under the worst-case scenario (multiple, continuously running devices per site with an aggregate duty cycle of 100%), levels exceeding permanent threshold shift could reach 0.9% of the SAC. Policy implications. This study highlights the potential for ‘collateral damage’ from interventions such as acoustic deterrent devices (ADDs) which are intended to reduce human–wildlife conflicts with pinnipeds but may affect the long-term health and habitat use of non-target species. This is especially true for harbour porpoises which are protected under the EU and UK Habitats Regulations. The aquaculture industry, policymakers and regulators in countries where ADDs are used should consider these findings when attempting to mitigate pinniped depredation

Parenting and oral health in an inner-city environment: a qualitative pilot study

Background Preventable oral diseases such as dental caries remain common in the United Kingdom. Clustering of poor health is observed within deprived communities, such as inner-city areas, where elevated levels of dental need are associated with lower uptake of dental care. Successful oral health promotion (OHP) initiatives are contingent upon effective community engagement. The aim of this pilot study was to engage with families with young children to explore community views on oral health and dental care and thus tailor OHP initiatives more effectively to their needs. Methods Qualitative research, involving individual interviews and triad focus groups with parents/caregivers, was conducted in a south London inner-city community as part of a ‘Well London’ programme initiative. Results Seventeen parents/caregivers participated in this pilot study. Parents/caregivers described a spectrum of oral health behaviours based on their social history, past dental experiences and cultural influences. All parents described a clear desire to create healthy lives for their children; however, two broad groups were apparent, termed ‘Oral Health Prioritisers’ and ‘Oral Health Non-prioritisers’. The former reported regularly accessing dental care for their children, believing that oral health contributes to systemic health. Non-prioritisers, however, preferentially used key services considered most beneficial to their child’s wellbeing. Dental services were considered a low priority for this group, where oral health was synonymous with absence of pain. Participants in both groups favoured OHP initiatives involving a range of health and social care services, with schools at the epicentre of programmes. First-time parents were proposed as an important group requiring support in future OHP initiatives with evidence suggesting that first-born children may have delayed presentation to a dentist. Conclusions The findings suggest that this inner-city community may contain sub-groups with contrasting perspectives on oral health and oral health behaviours; nevertheless, there was support for a systems approach to oral health promotion initiatives involving a range of health and social care services, including a critcal role for schools, and actively connecting with first-time parents. The findings provide the basis for further research

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.

Global dispersal and increasing frequency of the SARS-CoV-2 spike protein variant D614G are suggestive of a selective advantage but may also be due to a random founder effect. We investigate the hypothesis for positive selection of spike D614G in the United Kingdom using more than 25,000 whole genome SARS-CoV-2 sequences. Despite the availability of a large dataset, well represented by both spike 614 variants, not all approaches showed a conclusive signal of positive selection. Population genetic analysis indicates that 614G increases in frequency relative to 614D in a manner consistent with a selective advantage. We do not find any indication that patients infected with the spike 614G variant have higher COVID-19 mortality or clinical severity, but 614G is associated with higher viral load and younger age of patients. Significant differences in growth and size of 614G phylogenetic clusters indicate a need for continued study of this variant

Mortality and pulmonary complications in patients undergoing surgery with perioperative SARS-CoV-2 infection: an international cohort study

Background: The impact of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on postoperative recovery needs to be understood to inform clinical decision making during and after the COVID-19 pandemic. This study reports 30-day mortality and pulmonary complication rates in patients with perioperative SARS-CoV-2 infection. Methods: This international, multicentre, cohort study at 235 hospitals in 24 countries included all patients undergoing surgery who had SARS-CoV-2 infection confirmed within 7 days before or 30 days after surgery. The primary outcome measure was 30-day postoperative mortality and was assessed in all enrolled patients. The main secondary outcome measure was pulmonary complications, defined as pneumonia, acute respiratory distress syndrome, or unexpected postoperative ventilation. Findings: This analysis includes 1128 patients who had surgery between Jan 1 and March 31, 2020, of whom 835 (74·0%) had emergency surgery and 280 (24·8%) had elective surgery. SARS-CoV-2 infection was confirmed preoperatively in 294 (26·1%) patients. 30-day mortality was 23·8% (268 of 1128). Pulmonary complications occurred in 577 (51·2%) of 1128 patients; 30-day mortality in these patients was 38·0% (219 of 577), accounting for 81·7% (219 of 268) of all deaths. In adjusted analyses, 30-day mortality was associated with male sex (odds ratio 1·75 [95% CI 1·28–2·40], p\textless0·0001), age 70 years or older versus younger than 70 years (2·30 [1·65–3·22], p\textless0·0001), American Society of Anesthesiologists grades 3–5 versus grades 1–2 (2·35 [1·57–3·53], p\textless0·0001), malignant versus benign or obstetric diagnosis (1·55 [1·01–2·39], p=0·046), emergency versus elective surgery (1·67 [1·06–2·63], p=0·026), and major versus minor surgery (1·52 [1·01–2·31], p=0·047). Interpretation: Postoperative pulmonary complications occur in half of patients with perioperative SARS-CoV-2 infection and are associated with high mortality. Thresholds for surgery during the COVID-19 pandemic should be higher than during normal practice, particularly in men aged 70 years and older. Consideration should be given for postponing non-urgent procedures and promoting non-operative treatment to delay or avoid the need for surgery. Funding: National Institute for Health Research (NIHR), Association of Coloproctology of Great Britain and Ireland, Bowel and Cancer Research, Bowel Disease Research Foundation, Association of Upper Gastrointestinal Surgeons, British Association of Surgical Oncology, British Gynaecological Cancer Society, European Society of Coloproctology, NIHR Academy, Sarcoma UK, Vascular Society for Great Britain and Ireland, and Yorkshire Cancer Research

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

Global dispersal and increasing frequency of the SARS-CoV-2 spike protein variant D614G are suggestive of a selective advantage but may also be due to a random founder effect. We investigate the hypothesis for positive selection of spike D614G in the United Kingdom using more than 25,000 whole genome SARS-CoV-2 sequences. Despite the availability of a large dataset, well represented by both spike 614 variants, not all approaches showed a conclusive signal of positive selection. Population genetic analysis indicates that 614G increases in frequency relative to 614D in a manner consistent with a selective advantage. We do not find any indication that patients infected with the spike 614G variant have higher COVID-19 mortality or clinical severity, but 614G is associated with higher viral load and younger age of patients. Significant differences in growth and size of 614G phylogenetic clusters indicate a need for continued study of this variant

PANC Study (Pancreatitis: A National Cohort Study): national cohort study examining the first 30 days from presentation of acute pancreatitis in the UK

Abstract Background Acute pancreatitis is a common, yet complex, emergency surgical presentation. Multiple guidelines exist and management can vary significantly. The aim of this first UK, multicentre, prospective cohort study was to assess the variation in management of acute pancreatitis to guide resource planning and optimize treatment. Methods All patients aged greater than or equal to 18 years presenting with acute pancreatitis, as per the Atlanta criteria, from March to April 2021 were eligible for inclusion and followed up for 30 days. Anonymized data were uploaded to a secure electronic database in line with local governance approvals. Results A total of 113 hospitals contributed data on 2580 patients, with an equal sex distribution and a mean age of 57 years. The aetiology was gallstones in 50.6 per cent, with idiopathic the next most common (22.4 per cent). In addition to the 7.6 per cent with a diagnosis of chronic pancreatitis, 20.1 per cent of patients had a previous episode of acute pancreatitis. One in 20 patients were classed as having severe pancreatitis, as per the Atlanta criteria. The overall mortality rate was 2.3 per cent at 30 days, but rose to one in three in the severe group. Predictors of death included male sex, increased age, and frailty; previous acute pancreatitis and gallstones as aetiologies were protective. Smoking status and body mass index did not affect death. Conclusion Most patients presenting with acute pancreatitis have a mild, self-limiting disease. Rates of patients with idiopathic pancreatitis are high. Recurrent attacks of pancreatitis are common, but are likely to have reduced risk of death on subsequent admissions. </jats:sec

Not so silent spectators: How spectator vessels at international sailing regattas alter marine soundscapes

International sailing regattas are major sporting events often held within coastal marine environments which overlap with the habitats of marine species. Although races are confined to courses, the popularity of these events can attract large spectator flotillas, sometimes composed of hundreds of motorized vessels. Underwater noise from these flotillas can potentially alter soundscapes experienced by marine species. To understand how these flotillas may alter soundscapes, acoustic recordings were taken around racecourses during the 36th America's Cup in the Hauraki Gulf, New Zealand in 2021. Sustained increases in broadband underwater sound levels during the regatta (up to 17 dB re 1 μPa rms; 0.01–24 kHz) that extended beyond racecourse boundaries (&gt;8.5 km) and racing hours were observed; very likely attributable to the increase in regatta-related vessel activity. Underwater noise pollution from spectator flotillas attending larger regattas should be considered during event planning stages, particularly when events occur in ecologically significance areas

Duplicated Enhancer Region Increases Expression of CTSB and Segregates with Keratolytic Winter Erythema in South African and Norwegian Families

Contains fulltext : 174194.pdf (publisher's version ) (Closed access)Keratolytic winter erythema (KWE) is a rare autosomal-dominant skin disorder characterized by recurrent episodes of palmoplantar erythema and epidermal peeling. KWE was previously mapped to 8p23.1-p22 (KWE critical region) in South African families. Using targeted resequencing of the KWE critical region in five South African families and SNP array and whole-genome sequencing in two Norwegian families, we identified two overlapping tandem duplications of 7.67 kb (South Africans) and 15.93 kb (Norwegians). The duplications segregated with the disease and were located upstream of CTSB, a gene encoding cathepsin B, a cysteine protease involved in keratinocyte homeostasis. Included in the 2.62 kb overlapping region of these duplications is an enhancer element that is active in epidermal keratinocytes. The activity of this enhancer correlated with CTSB expression in normal differentiating keratinocytes and other cell lines, but not with FDFT1 or NEIL2 expression. Gene expression (qPCR) analysis and immunohistochemistry of the palmar epidermis demonstrated significantly increased expression of CTSB, as well as stronger staining of cathepsin B in the stratum granulosum of affected individuals than in that of control individuals. Analysis of higher-order chromatin structure data and RNA polymerase II ChIA-PET data from MCF-7 cells did not suggest remote effects of the enhancer. In conclusion, KWE in South African and Norwegian families is caused by tandem duplications in a non-coding genomic region containing an active enhancer element for CTSB, resulting in upregulation of this gene in affected individuals