Relevance of large litter bag burial for the study of leaf breakdown in the hyporheic zone

Particulate organic matter is the major source of energy for most low-order streams, but a large part of this litter is buried within bed sediment during floods and thus become poorly available for benthic food webs. The fate of this buried litter is little studied. In most cases, measures of breakdown rates consist of burying a known mass of litter within the stream sediment and following its breakdown over time. We tested this method using large litter bags (15 x 15 cm) and two field experiments. First, we used litter large bags filled with Alnus glutinosa leaves (buried at 20 cm depth with a shovel) in six stations within different land-use contexts and with different sediment grain sizes. Breakdown rates were surprisingly high (0.0011–0.0188 day-1) and neither correlate with most of the physico-chemical characteristics measured in the interstitial habitats nor with the land-use around the stream. In contrast, the rates were negatively correlated with a decrease in oxygen concentrations between surface and buried bags and positively correlated with both the percentage of coarse particles (20–40 mm) in the sediment and benthic macro-invertebrate richness. These results suggest that the vertical exchanges with surface water in the hyporheic zone play a crucial role in litter breakdown. Second, an experimental modification of local sediment (removing fine particles with a shovel to increase vertical exchanges) highlighted the influence of grain size on water and oxygen exchanges, but had no effect on hyporheic breakdown rates. Burying large litter bags within sediments may thus not be a relevant method, especially in clogged conditions, due to changes induced through the burial process in the vertical connectivity between surface and interstitial habitats that modify organic matter processing

Bilan et perspectives des deux écoles techniques « notions et techniques en écologie » organisées par le Département EFPA

La création du Département «Écologie des Forêts, Prairies et milieux Aquatiques» a suscité de la part des personnels techniques concernés une volonté d’intégration collective sous le concept fédérateur de l’écologie. Pour cela deux écoles techniques ont été organisées sur des notions et méthodes d’écologie par un Comité de pilotage composé de techniciens et de scientifiques. L’objectif visait à familiariser les techniciens aux concepts de l’écologie et à les aider à se situer dans les thématiques de recherche du Département EFPA. Enfin, il s’agissait d’instaurer une communauté de pratique autour de l’écologie. Ces écoles ont rassemblé 79 personnes, en proposant visites sur le terrain et séances en salle. Deux animations ont particulièrement été appréciées, l’une sous forme d’un jeu en préambule, l’autre sous forme de présentations par des binômes techniciens/chercheurs. Les participants sont plutôt convaincus d’avoir progressé sur les notions en écologie et ils ont la volonté d’aller plus loin avec la création d’un Réseau de Technicien en Ecologie (RTE), la mise en place d’une liste de diffusion et l’organisation régulière de rencontres entre membres du réseau

Characterization of greater middle eastern genetic variation for enhanced disease gene discovery

The Greater Middle East (GME) has been a central hub of human migration and population admixture. The tradition of consanguinity, variably practiced in the Persian Gulf region, North Africa, and Central Asia1-3, has resulted in an elevated burden of recessive disease4. Here we generated a whole-exome GME variome from 1,111 unrelated subjects. We detected substantial diversity and admixture in continental and subregional populations, corresponding to several ancient founder populations with little evidence of bottlenecks. Measured consanguinity rates were an order of magnitude above those in other sampled populations, and the GME population exhibited an increased burden of runs of homozygosity (ROHs) but showed no evidence for reduced burden of deleterious variation due to classically theorized ‘genetic purging’. Applying this database to unsolved recessive conditions in the GME population reduced the number of potential disease-causing variants by four- to sevenfold. These results show variegated genetic architecture in GME populations and support future human genetic discoveries in Mendelian and population genetics

A new MRI rating scale for progressive supranuclear palsy and multiple system atrophy: validity and reliability

AIM To evaluate a standardised MRI acquisition protocol and a new image rating scale for disease severity in patients with progressive supranuclear palsy (PSP) and multiple systems atrophy (MSA) in a large multicentre study. METHODS The MRI protocol consisted of two-dimensional sagittal and axial T1, axial PD, and axial and coronal T2 weighted acquisitions. The 32 item ordinal scale evaluated abnormalities within the basal ganglia and posterior fossa, blind to diagnosis. Among 760 patients in the study population (PSP = 362, MSA = 398), 627 had per protocol images (PSP = 297, MSA = 330). Intra-rater (n = 60) and inter-rater (n = 555) reliability were assessed through Cohen's statistic, and scale structure through principal component analysis (PCA) (n = 441). Internal consistency and reliability were checked. Discriminant and predictive validity of extracted factors and total scores were tested for disease severity as per clinical diagnosis. RESULTS Intra-rater and inter-rater reliability were acceptable for 25 (78%) of the items scored (≥ 0.41). PCA revealed four meaningful clusters of covarying parameters (factor (F) F1: brainstem and cerebellum; F2: midbrain; F3: putamen; F4: other basal ganglia) with good to excellent internal consistency (Cronbach α 0.75-0.93) and moderate to excellent reliability (intraclass coefficient: F1: 0.92; F2: 0.79; F3: 0.71; F4: 0.49). The total score significantly discriminated for disease severity or diagnosis; factorial scores differentially discriminated for disease severity according to diagnosis (PSP: F1-F2; MSA: F2-F3). The total score was significantly related to survival in PSP (p<0.0007) or MSA (p<0.0005), indicating good predictive validity. CONCLUSIONS The scale is suitable for use in the context of multicentre studies and can reliably and consistently measure MRI abnormalities in PSP and MSA. Clinical Trial Registration Number The study protocol was filed in the open clinical trial registry (http://www.clinicaltrials.gov) with ID No NCT00211224

Mortality and pulmonary complications in patients undergoing surgery with perioperative SARS-CoV-2 infection: an international cohort study

Background: The impact of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on postoperative recovery needs to be understood to inform clinical decision making during and after the COVID-19 pandemic. This study reports 30-day mortality and pulmonary complication rates in patients with perioperative SARS-CoV-2 infection. Methods: This international, multicentre, cohort study at 235 hospitals in 24 countries included all patients undergoing surgery who had SARS-CoV-2 infection confirmed within 7 days before or 30 days after surgery. The primary outcome measure was 30-day postoperative mortality and was assessed in all enrolled patients. The main secondary outcome measure was pulmonary complications, defined as pneumonia, acute respiratory distress syndrome, or unexpected postoperative ventilation. Findings: This analysis includes 1128 patients who had surgery between Jan 1 and March 31, 2020, of whom 835 (74·0%) had emergency surgery and 280 (24·8%) had elective surgery. SARS-CoV-2 infection was confirmed preoperatively in 294 (26·1%) patients. 30-day mortality was 23·8% (268 of 1128). Pulmonary complications occurred in 577 (51·2%) of 1128 patients; 30-day mortality in these patients was 38·0% (219 of 577), accounting for 81·7% (219 of 268) of all deaths. In adjusted analyses, 30-day mortality was associated with male sex (odds ratio 1·75 [95% CI 1·28–2·40], p\textless0·0001), age 70 years or older versus younger than 70 years (2·30 [1·65–3·22], p\textless0·0001), American Society of Anesthesiologists grades 3–5 versus grades 1–2 (2·35 [1·57–3·53], p\textless0·0001), malignant versus benign or obstetric diagnosis (1·55 [1·01–2·39], p=0·046), emergency versus elective surgery (1·67 [1·06–2·63], p=0·026), and major versus minor surgery (1·52 [1·01–2·31], p=0·047). Interpretation: Postoperative pulmonary complications occur in half of patients with perioperative SARS-CoV-2 infection and are associated with high mortality. Thresholds for surgery during the COVID-19 pandemic should be higher than during normal practice, particularly in men aged 70 years and older. Consideration should be given for postponing non-urgent procedures and promoting non-operative treatment to delay or avoid the need for surgery. Funding: National Institute for Health Research (NIHR), Association of Coloproctology of Great Britain and Ireland, Bowel and Cancer Research, Bowel Disease Research Foundation, Association of Upper Gastrointestinal Surgeons, British Association of Surgical Oncology, British Gynaecological Cancer Society, European Society of Coloproctology, NIHR Academy, Sarcoma UK, Vascular Society for Great Britain and Ireland, and Yorkshire Cancer Research

A tool for interdiciplinary research in a eco-hydrological perspective : the Research Observatory of Lotic Ecosystems (OREL) at the National Institute for Agricultural Research (INRA), France

A tool for interdiciplinary research in a eco-hydrological perspective : the Research Observatory of Lotic Ecosystems (OREL) at the National Institute for Agricultural Research (INRA), France. Multifunctionality of Landscapes - Analysis, Evaluation, and Decision Suppor

Behavorial effects of waterborne carbofuran in goldfish

International audienceThe effects of concentration (1, 10, 100 μg/L) and duration (4, 8, 12 h) of exposure to carbofuran were assessed on the swimming activity, social interactions, and behavioral responses of goldfish to a flow (0.1 L/min) of water, with or without chironomids. Observations were also made on the behavioral responses of unexposed goldfish to a flow (0.1 L/min) of carbofuran-contaminated water. A 4-h exposure of goldfish 1 μg/L carbofuran produced a significant increase in sheltering, burst swimming, and nipping. Responses were enhanced at 100 μg/L. After a 12-h exposure, the behavioral effects of 1 μg/L carbofuran were less apparent. However, burst swimming at 10 μg/L, and sheltering, nipping and burst swimming at 100 μg/L, were still significantly increased after a 12-h exposure to carbofuran. Grouping was not consistently affected by exposure conditions. Chemical attraction to a filtrate of chironomids was significantly reduced after the 4-h exposure to 1 μg/L carbofuran. Decreased attraction to the food extract was less apparent after the 12-h exposure, except at 100 μg/L carbofuran. A significant decrease in attraction to a flow of uncontaminated water was also observed after a 4-h exposure to 10 and 100 μg/L carbofuran. Unexposed goldfish did not show avoidance reaction to a flow of carbofuran-contaminated water, even at a concentration (10 mg/L) exceeding the mean 96-h LC-50 in cyprinids (0.5–1 mg/L). However, at all concentrations tested (0.1, 1, 10 mg/L), goldfish quickly reacted to the introduction of the solution of carbofuran by increased burst swimming and nipping. These results are discussed in the light of the data concerning behavioral and neurotoxic effects of carbamate and organophosphorous insecticides in fish