Mining search logs for usage patterns

One of the greatest opportunities and challenges of the 21st century is the ever increasing significance of data. Data underpins our businesses and our economy, providing awareness and insight into in every sphere of life; from politics to the environment, arts and society. The everyday interactions between people and devices can be harnessed to power a new generation of products and services, allowing us to better understand human needs, aspirations and behaviour. Of all the data to which we have access, there is none more valuable than the trace people leave when they search for digital information. In browsing the web, people reveal something about their behaviour and habits, but little about their intent. By contrast, when people search for information, they express in their own words their explicit needs and goals. This data represents a unique resource that offers extraordinary potential for delivering insights that can drive the next generation of digital services and applications. Various studies have been undertaken to understand how and why people interact with search engines. Such studies have led to the creation of frameworks that describe distinct patterns of use, ranging from individual queries to entire information seeking episodes. These patterns may focus on information seeking behavior [9], the types of search tasks that users perform [10], their goals and missions [5], their task switching behavior [4], or the tasks, needs and goals that they are trying to address when using search systems [10, 11]. Moreover, the academic community is not alone in showing an interest in mining search logs. Two highly influential commercial organisations, ElasticSearch and LucidWorks, have both recently released independent logfile analysis platforms (Kibana and SiLK respectively [13, 14]). What unites all of these efforts is the belief that finding distinct, repeatable patterns of behaviour can lead to a better understanding of user needs and ultimately a more effective search experience. In this chapter, we explore the use of data mining techniques to find patterns in search logs, focusing on the application of open source tools and publicly available data

Categorising Search Sessions: Some Insights from Human Judgments

The session is a common unit of interaction that is used in search log analysis. By analysing sessions, it is possible to identify distinct classes of searcher behaviour that can be used to design search applications that better support groups of users based on their expected behaviours. This paper describes an online card sort experiment to investigate how people distinguish between search sessions (i.e., how they group them) to gain insights into their organising principles and to inform the future use of automated approaches, such as clustering. Results show patterns of user behaviour to be the most common way of grouping sessions

Use of arm measurements to improve radiative transfer models used in climate models

The demands of accurate predictions of radiative transfer for climate applications are well-documented. While much effort is being devoted to evaluating the accuracy of the GCM radiative transfer schemes, the problem of developing accurate, computationally efficient schemes for climate models still remains. This paper discusses our efforts in developing accurate and fast computational methods for global and regional climate models

Global Research Alliance N2O chamber methodology guidelines: considerations for automated flux measurement

Nitrous oxide (N2O) emissions are highly episodic in response to nitrogen additions and changes in soil moisture. Automated gas sampling provides the necessary high temporal frequency to capture these emission events in real time, ensuring the development of accurate N2O inventories and effective mitigation strategies to reduce global warming. This paper outlines the design and operational considerations of automated chamber systems including chamber design and deployment, frequency of gas sampling, and options in terms of the analysis of gas samples. The basic hardware and software requirements for automated chambers are described, including the major challenges and obstacles in their implementation and operation in a wide range of environments. Detailed descriptions are provided of automated systems that have been deployed to assess the impacts of agronomy on the emissions of N2O and other significant greenhouse gases. This information will assist researchers across the world in the successful deployment and operation of automated N2O chamber systems

Abdominal aortic aneurysm is associated with a variant in low-density lipoprotein receptor-related protein 1

Abdominal aortic aneurysm (AAA) is a common cause of morbidity and mortality and has a significant heritability. We carried out a genome-wide association discovery study of 1866 patients with AAA and 5435 controls and replication of promising signals (lead SNP with a p value < 1 × 10-5) in 2871 additional cases and 32,687 controls and performed further follow-up in 1491 AAA and 11,060 controls. In the discovery study, nine loci demonstrated association with AAA (p < 1 × 10-5). In the replication sample, the lead SNP at one of these loci, rs1466535, located within intron 1 of low-density-lipoprotein receptor-related protein 1 (LRP1) demonstrated significant association (p = 0.0042). We confirmed the association of rs1466535 and AAA in our follow-up study (p = 0.035). In a combined analysis (6228 AAA and 49182 controls), rs1466535 had a consistent effect size and direction in all sample sets (combined p = 4.52 × 10-10, odds ratio 1.15 [1.10-1.21]). No associations were seen for either rs1466535 or the 12q13.3 locus in independent association studies of coronary artery disease, blood pressure, diabetes, or hyperlipidaemia, suggesting that this locus is specific to AAA. Gene-expression studies demonstrated a trend toward increased LRP1 expression for the rs1466535 CC genotype in arterial tissues; there was a significant (p = 0.029) 1.19-fold (1.04-1.36) increase in LRP1 expression in CC homozygotes compared to TT homozygotes in aortic adventitia. Functional studies demonstrated that rs1466535 might alter a SREBP-1 binding site and influence enhancer activity at the locus. In conclusion, this study has identified a biologically plausible genetic variant associated specifically with AAA, and we suggest that this variant has a possible functional role in LRP1 expression

Mortality and pulmonary complications in patients undergoing surgery with perioperative SARS-CoV-2 infection: an international cohort study

Background: The impact of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on postoperative recovery needs to be understood to inform clinical decision making during and after the COVID-19 pandemic. This study reports 30-day mortality and pulmonary complication rates in patients with perioperative SARS-CoV-2 infection. Methods: This international, multicentre, cohort study at 235 hospitals in 24 countries included all patients undergoing surgery who had SARS-CoV-2 infection confirmed within 7 days before or 30 days after surgery. The primary outcome measure was 30-day postoperative mortality and was assessed in all enrolled patients. The main secondary outcome measure was pulmonary complications, defined as pneumonia, acute respiratory distress syndrome, or unexpected postoperative ventilation. Findings: This analysis includes 1128 patients who had surgery between Jan 1 and March 31, 2020, of whom 835 (74·0%) had emergency surgery and 280 (24·8%) had elective surgery. SARS-CoV-2 infection was confirmed preoperatively in 294 (26·1%) patients. 30-day mortality was 23·8% (268 of 1128). Pulmonary complications occurred in 577 (51·2%) of 1128 patients; 30-day mortality in these patients was 38·0% (219 of 577), accounting for 81·7% (219 of 268) of all deaths. In adjusted analyses, 30-day mortality was associated with male sex (odds ratio 1·75 [95% CI 1·28–2·40], p\textless0·0001), age 70 years or older versus younger than 70 years (2·30 [1·65–3·22], p\textless0·0001), American Society of Anesthesiologists grades 3–5 versus grades 1–2 (2·35 [1·57–3·53], p\textless0·0001), malignant versus benign or obstetric diagnosis (1·55 [1·01–2·39], p=0·046), emergency versus elective surgery (1·67 [1·06–2·63], p=0·026), and major versus minor surgery (1·52 [1·01–2·31], p=0·047). Interpretation: Postoperative pulmonary complications occur in half of patients with perioperative SARS-CoV-2 infection and are associated with high mortality. Thresholds for surgery during the COVID-19 pandemic should be higher than during normal practice, particularly in men aged 70 years and older. Consideration should be given for postponing non-urgent procedures and promoting non-operative treatment to delay or avoid the need for surgery. Funding: National Institute for Health Research (NIHR), Association of Coloproctology of Great Britain and Ireland, Bowel and Cancer Research, Bowel Disease Research Foundation, Association of Upper Gastrointestinal Surgeons, British Association of Surgical Oncology, British Gynaecological Cancer Society, European Society of Coloproctology, NIHR Academy, Sarcoma UK, Vascular Society for Great Britain and Ireland, and Yorkshire Cancer Research

Shared Genetic Risk Factors of Intracranial, Abdominal, and Thoracic Aneurysms

Background: Intracranial aneurysms (IAs), abdominal aortic aneurysms (AAAs), and thoracic aortic aneurysms (TAAs) all have a familial predisposition. Given that aneurysm types are known to co‐occur, we hypothesized that there may be shared genetic risk factors for IAs, AAAs, and TAAs. Methods and Results: We performed a mega‐analysis of 1000 Genomes Project‐imputed genome‐wide association study (GWAS) data of 4 previously published aneurysm cohorts: 2 IA cohorts (in total 1516 cases, 4305 controls), 1 AAA cohort (818 cases, 3004 controls), and 1 TAA cohort (760 cases, 2212 controls), and observed associations of 4 known IA, AAA, and/or TAA risk loci (9p21, 18q11, 15q21, and 2q33) with consistent effect directions in all 4 cohorts. We calculated polygenic scores based on IA‐, AAA‐, and TAA‐associated SNPs and tested these scores for association to case‐control status in the other aneurysm cohorts; this revealed no shared polygenic effects. Similarly, linkage disequilibrium–score regression analyses did not show significant correlations between any pair of aneurysm subtypes. Last, we evaluated the evidence for 14 previously published aneurysm risk single‐nucleotide polymorphisms through collaboration in extended aneurysm cohorts, with a total of 6548 cases and 16 843 controls (IA) and 4391 cases and 37 904 controls (AAA), and found nominally significant associations for IA risk locus 18q11 near RBBP8 to AAA (odds ratio [OR]=1.11; P=4.1×10−5) and for TAA risk locus 15q21 near FBN1 to AAA (OR=1.07; P=1.1×10−3). Conclusions: Although there was no evidence for polygenic overlap between IAs, AAAs, and TAAs, we found nominally significant effects of two established risk loci for IAs and TAAs in AAAs. These two loci will require further replication

Proteomic analysis of the human skin proteome after in vivo treatment with sodium dodecyl sulphate

BACKGROUND: Skin has a variety of functions that are incompletely understood at the molecular level. As the most accessible tissue in the body it often reveals the first signs of inflammation or infection and also represents a potentially valuable source of biomarkers for several diseases. In this study we surveyed the skin proteome qualitatively using gel electrophoresis, liquid chromatography tandem mass spectrometry (GeLC-MS/MS) and quantitatively using an isobaric tagging strategy (iTRAQ) to characterise the response of human skin following exposure to sodium dodecyl sulphate (SDS).RESULTS: A total of 653 skin proteins were assigned, 159 of which were identified using GeLC-MS/MS and 616 using iTRAQ, representing the most comprehensive proteomic study in human skin tissue. Statistical analysis of the available iTRAQ data did not reveal any significant differences in the measured skin proteome after 4 hours exposure to the model irritant SDS.CONCLUSIONS: This study represents the first step in defining the critical response to an irritant at the level of the proteome and provides a valuable resource for further studies at the later stages of irritant exposure

ELEMENTAL COMPOSITION OF INCISORS IN NOVA SCOTIA MOOSE: EVALUATION OF A POPULATION WITH ABNORMAL INCISOR BREAKAGE

This study compared the concentrations of major and trace elements in the enamel of incisors from moose (Alces alces andersoni) in Cape Breton Highlands, where the incidence of incisor tooth breakage was believed to be unusually high, and moose in southwest Nova Scotia (A. a. americana) where there was no evidence of breakage. Our goal was to determine which elements, if any, might be related to the incisor breakage in moose from Cape Breton Highlands. There was a positive relationship between age and frequency of incisor breakage, and most moose had a broken I2 incisor by 4 years of age in the Cape Breton Highlands. We analyzed I2 incisors for 51 trace elements with Inductively Coupled Plasma-Mass Spectrometry. Concentrations of 8 elements, including barium, beryllium, cadmium, cobalt, lead, tin, strontium, and yttrium, were lower (P < 0.05) in incisors from Cape Breton Highlands; gallium had a higher concentration. Reduced intake of barium, beryllium, and strontium is linked to depressed growth and reduced calcification of bones and teeth