Fluctuating ecological networks: a synthesis of maximum entropy approaches for pattern and perturbation detection

Ecological networks such as plant-pollinator systems vary systematically in space and time. This variability includes fluctuations in global network properties such as total number and intensity of interactions in the network, but also in the local properties of individual nodes, such as the number and intensity of species-level interactions. Fluctuations of local properties can significantly affect higher-order network features, e.g. robustness and nestedness. These fluctuations should therefore be controlled for in applications that rely on null models, including pattern detection, perturbation experiments and network reconstruction from limited observations. By contrast, most randomization methods used by ecologists treat node-level local properties as hard constraints that cannot fluctuate. Here we synthesise a set of methods based on the statistical mechanics of networks, which we illustrate with some practical examples. We illustrate how this approach can be used by experimental ecologists to study the statistical significance of network patterns and the rewiring of networks under simulated perturbations. Modelling species heterogeneity, while allowing for local fluctuations around a theoretically grounded notion of structural equilibrium, will offer a new generation of models and experiments to understand the assembly and resilience of ecological networks.Comment: submitte

FGF-2 and anosmin-1 are selectively expressed in different types of multiple sclerosis lesions

Multiple sclerosis is a demyelinating disease that affects ~2,000,000 people worldwide. In the advanced stages of the disease, endogenous oligodendrocyte precursors cannot colonize the lesions or differentiate into myelinating oligodendrocytes. During development, both FGF-2 and Anosmin-1 participate in oligodendrocyte precursor cell migration, acting via the FGF receptor 1 (FGFR1). Hence, we performed a histopathological and molecular analysis of these developmental modulators in postmortem tissue blocks from multiple sclerosis patients. Accordingly, we demonstrate that the distribution of FGF-2 and Anosmin-1 varies between the different types of multiple sclerosis lesions: FGF-2 is expressed only within active lesions and in the periplaque of chronic lesions, whereas Anosmin-1 is upregulated within chronic lesions and is totally absent in active lesions. We show that the endogenous oligodendrocyte precursor cells recruited toward chronic-active lesions express FGFR1, possibly in response to the FGF-2 produced by microglial cells in the periplaque. Also in human tissue, FGF-2 is upregulated in perivascular astrocytes in regions of the normal-appearing gray matter, where the integrity of the blood-brain barrier is compromised. In culture, FGF-2 and Anosmin-1 influence adult mouse oligodendrocyte precursor cell migration in the same manner as at embryonic stages, providing an explanation for the histopathological observations: FGF-2 attracts/ enhances its migration, which is hindered by Anosmin-1. We propose that FGF-2 and Anosmin-1 are markers for the histopathological type and the level of inflammation of multiple sclerosis lesions, and that they may serve as novel pharmacogenetic targets to design future therapies that favor effective remyelination and protect the blood-brain barrier. © 2011 the authors.Peer Reviewe

Fluctuating ecological networks: a synthesis of maximum‐entropy approaches for pattern detection and process inference

Ecological networks such as plant-pollinator systems and food webs vary in space and time. This variability includes fluctuations in global properties such as the total number and intensity of interactions in the network but also in the number and intensity of local (i.e. node level) species interactions. Fluctuations of species' properties can significantly affect higher-order network features, for example, robustness and nestedness, and should therefore be taken into account in null models for pattern detection and hypothesis testing. In ecological research, classical null models treat node-level properties as 'hard' constraints that cannot fluctuate. Here, we review and synthesize a set of maximum-entropy methods that allow for fluctuating ('soft') constraints, offering a new addition to the classical toolkit of the ecologist. We illustrate the methods with some practical examples, pointing to currently available open-source computer codes. We clarify how this approach can be used by experimental ecologists to detect non-random patterns with null models that not only rewire, but also redistribute interaction strengths by allowing fluctuations in the enforced constraints. Explicit modelling of interspecific heterogeneity through local (i.e. species level) fluctuations of topological and quantitative constraints offers a statistically robust and expanded (e.g. including weighted links) set of tools to understand the assembly and resilience of ecological networks.Theoretical Physic

Distribución de metales pesados en sedimentos de las marismas del Odiel (Huelva, España)

Se ha analizado la distribución y contenido total de metales pesados (Co, Cu, Fe, Mn, Ni y Pb) en sedimentos de las Marismas del Odiel (SO España). Las concentraciones de estos elementos, obtenidas por espectrofotometría de absorción atómica, fueron muy elevadas para la mayoría de los elementos analizados. Su distribución no es homogénea, ni presenta un patrón geográfico marcadamente definido, pudiéndose encontrar altos niveles repartidos por toda la marisma. Existe cierto gradiente topográfico, con mayores concentraciones en puntos de menor cota. Los puntos de muestreo más aislados de la incidencia mareal y los más expuestos a mar abierto registraron los niveles más bajos.Atomic absorption spectroscopy has permitted the determination of the content of heavy metals and their distribution in sediments of the Odiel Saltmarhes (SWSpain). Avery high metal concentration has been found in most of the samples investigated but their distribution is non-homogeneous and this prevents establishing a geographical pattern. Nevertheless, a certain topographic gradient can be observed: lower levels present the highest concentrations whereas areas unaccessible by tide fluctuations or those exposed to the sea present the lowest index of contamination

Análisis semicuantitativo del calcio y fósforo en el esmalte y la dentina

Existe una serie de características comunes asociadas al proceso biológico de formación de los tejidos calcificados a pesar de que los productos finales sean estructuralmente distintos. La presente investigación tiene como propósito determinar si la ratio Ca/P ratio es la misma para los tejidos calcificados dentales tanto del feto como del adulto y si dicha ratio es diferente al valor de la ratio Ca/P de la hidroxiapatita pura calculada por estequiometría. Se escogió como material de observación el esmalte y la dentina, en muestras de fetos humanos y en un total de 30 ratas adultas de raza Wistar y 20 dientes humanos sanos. Las observaciones se llevaron a cabo por medio de Microscopia Electrónica de Barrido y Microanálisis por separación de energía de rayos X. Los valores totales de la ratio Ca/P para el esmalte oscilaron en un intervalo de 0,9 y 1,2, con una media que se encuentra entre 1,07 y 1,08. Los valores totales de la ratio Ca/P para la dentina oscilan entre 1,03 y 1,12 y la media entre 1,07 y 1,075. No se encontraron diferencias estadísticamente significativas entre esmalte fetal y adulto ni entre la dentina fetal y adulta. Aún no pudiendo definir la existencia de precursores específicos en los tejidos calcificados del diente (esmalte y dentina), nuestros resultados sugieren que no toda la cristalización de estos tejidos corre a cargo de la hidroxiapatita sino que deben haber otros compuestos que expliquen la disminución del valor de la ratio Ca/P en las muestras estudiadas

Calibración de los parámetros del modelo de directividad de los transductores de la ecosonda Simrad EK60

The scientific echo sounder Simrad EK60 could be used for quantification of fisheries resources in marine science research campaigns. They use different frequency channels (from 18 to 200 KHz), emitted by underwater sound transducers with circular aperture geometries. Calibration is essential to obtain reliable values of Ts (Target Strength) and Sv (Volume Backscattering Coefficient) parameters, which are used to estimate fisheries stocks using echo volume integration. In this paper, manufacturer’s calibration method is presented, together a new proposal for the acquisition and post-processing of calibration data to obtain more accurate results.La ecosonda científica Simrad EK60 se utiliza para cuantificar los recursos pesqueros en campañas de investigación oceanográfica, utilizando diferentes canales de frecuencias (de 18 a 200KHz) mediante transductores acústicos de apertura con geometría circular. Su calibración resulta esencial para obtener los valores de Ts (‘target strength’) y Sv (‘Volume backscattering coefficient’), necesarios para estimar los tamaños de los stocks de las pesquerías mediante integración de los ecos. En este trabajo se presenta el método de calibración propuesto por el fabricante, así como una nueva propuesta de obtención y postproceso de datos que permite obtener calibraciones fiable

Acoustic and optical variations during rapid downward motion episodes in the deep north-western Mediterranean Sea

An Acoustic Doppler Current Profiler (ADCP) was moored at the deep-sea site of the ANTARES neutrino telescope near Toulon, France, thus providing a unique opportunity to compare high-resolution acoustic and optical observations between 70 and 170 m above the sea bed at 2475 m. The ADCP measured downward vertical currents of magnitudes up to 0.03 m s-1 in late winter and early spring 2006. In the same period, observations were made of enhanced levels of acoustic reflection, interpreted as suspended particles including zooplankton, by a factor of about 10 and of horizontal currents reaching 0.35 m s-1. These observations coincided with high light levels detected by the telescope, interpreted as increased bioluminescence. During winter 2006 deep dense-water formation occurred in the Ligurian subbasin, thus providing a possible explanation for these observations. However, the 10-20 days quasi-periodic episodes of high levels of acoustic reflection, light and large vertical currents continuing into the summer are not direct evidence of this process. It is hypothesized that the main process allowing for suspended material to be moved vertically later in the year is local advection, linked with topographic boundary current instabilities along the rim of the 'Northern Current'.Comment: 30 pages, 7 figure

The ANTARES Telescope Neutrino Alert System

The ANTARES telescope has the capability to detect neutrinos produced in astrophysical transient sources. Potential sources include gamma-ray bursts, core collapse supernovae, and flaring active galactic nuclei. To enhance the sensitivity of ANTARES to such sources, a new detection method based on coincident observations of neutrinos and optical signals has been developed. A fast online muon track reconstruction is used to trigger a network of small automatic optical telescopes. Such alerts are generated for special events, such as two or more neutrinos, coincident in time and direction, or single neutrinos of very high energy.Comment: 17 pages, 9 figures submitted to Astroparticle Physic

Image analysis to identify objects in filters obtained from turbidity plumes

The study of turbidity plumes developed in front of the river mouth, have an increasing scientific interest due to its contribution to infralittoral sediment transport and deposition. River plume evolution and deposition in submarine fans related to environmental constrains could be interpreted by the analysis of suspended particulate matter (SPM) retained during the filtering process. In this study, a new methodology approach to obtain quantitative results in sediment filters, using custom digital image processing techniques, is presented and some promising preliminary results are obtained. This procedure could avoid time-consuming during SPM analysis allowing an easy way to obtain fast and quantitative information, which might lead to a better interpretation and comprehension of factors involved in the evolution of riverine turbidity plumes.Versión del edito