Inhibition of Quorum Sensing-Controlled Virulence Factor Production in Pseudomonas aeruginosa PAO1 by Ayurveda Spice Clove (Syzygium Aromaticum) Bud Extract

Quorum sensing controls the virulence determinants in most proteobacteria. In this work, the hexane, chloroform and methanol extracts of an Ayurveda spice, namely clove (Syzygium aromaticum), shown anti-quorum sensing activity. Hexane and methanol extracts of clove inhibited the response of C. violaceum CV026 to exogenously supplied N‐hexanoylhomoserine lactone, in turn preventing violacein production. Chloroform and methanol extracts of clove significantly reduced bioluminescence production by E. coli [pSB1075] grown in the presence of N-(3-oxododecanoyl)-l-homoserine lactone. We demonstrated that clove extract inhibited quorum sensing-regulated phenotypes in Pseudomonas aeruginosa PA01, including expression of lecA::lux (by hexane extract), swarming (maximum inhibition by methanol extract), pyocyanin (maximum inhibition by hexane extract). This study shows that the presence of natural compounds that exhibit anti-quorum sensing activity in the clove extracts may be useful as the lead of anti-infective drugs

Summaries as Captions: Generating Figure Captions for Scientific Documents with Automated Text Summarization

Good figure captions help paper readers understand complex scientific figures. Unfortunately, even published papers often have poorly written captions. Automatic caption generation could aid paper writers by providing good starting captions that can be refined for better quality. Prior work often treated figure caption generation as a vision-to-language task. In this paper, we show that it can be more effectively tackled as a text summarization task in scientific documents. We fine-tuned PEGASUS, a pre-trained abstractive summarization model, to specifically summarize figure-referencing paragraphs (e.g., "Figure 3 shows...") into figure captions. Experiments on large-scale arXiv figures show that our method outperforms prior vision methods in both automatic and human evaluations. We further conducted an in-depth investigation focused on two key challenges: (i) the common presence of low-quality author-written captions and (ii) the lack of clear standards for good captions. Our code and data are available at: https://github.com/Crowd-AI-Lab/Generating-Figure-Captions-as-a-Text-Summarization-Task.Comment: Accepted by INLG-202

Designing and Evaluating an Interactive Multimedia Web-Based Simulation for Developing Nurses' Competencies in Acute Nursing Care: Randomized Controlled Trial

10.2196/jmir.3853Journal of Medical Internet Research17

Surgical Correction in Patients with Lumbar Degenerative Kyphosis Who Had Low Bone Mineral Density: An Analysis of 40 Patients with a Minimum Follow-Up of Two Years

Study DesignRetrospective study.PurposeTo investigate influence of bone mineral density (BMD) on the surgical correction of lumbar degenerative kyphosis (LDK).Overview of LiteratureNo studies so far have reported the influence of BMD on the surgical correction of LDK.MethodsForty LDK patients with more than 2 years follow-up were studied. Pelvic incidence (PI), pelvic tilt, sacral slope, sagittal vertical axis (SVA), lumbar lordosis (LL), and thoracic kyphosis were measured preoperatively, immediate postoperatively and at final follow-up. Adverse outcomes: proximal adjacent fractures, sagittal decompensation, pseudoarthrosis, and cage subsidence were documented.ResultsThere were 37 females and 3 males. Average age was 65.1±4.5 years and mean follow-up was 34.2±16.7 months. 42.5% were Takemitsu type 3 curves, 27.5% type 2, 20.0% type 4 and 10.0% type 1. 37.5% had osteopenia, 40.0% osteoporosis and 22.5% had severe osteoporosis. SVA improved from 237.0±96.7 mm preoperatively to 45.3±41.8 mm postoperatively (p=0.000). LL improved from 10.5°±14.7° to -40.6°±10.9° postoperatively (p=0.000). At final follow-up SVA deteriorated to 89.8±72.2 mm and LL to 34.7°±15.8° (p=0.000). The association between late sagittal decompensation, pseudoarthrosis, or proximal adjacent fractures and osteoporosis was insignificant. The difference between immediate postoperative LL and PI (PIDiff) had a significant association with sagittal decompensation and pseudoarthrosis.ConclusionsOsteoporosis did not influence the degree of correction, late sagittal decompensation, proximal adjacent fractures, and pseudoarthrosis in LDK. PIDiff had a significant association with sagittal decompensation and pseudoarthrosis

The Zeroth Law of Thermodynamics and Volume-Preserving Conservative Dynamics with Equilibrium Stochastic Damping

We propose a mathematical formulation of the zeroth law of thermodynamics and develop a stochastic dynamical theory, with a consistent irreversible thermodynamics, for systems possessing sustained conservative stationary current in phase space while in equilibrium with a heat bath. The theory generalizes underdamped mechanical equilibrium: $dx=gdt+\{-D\nabla\phi dt+\sqrt{2D}dB(t)\}$, with $\nabla\cdot g=0$ and $\{\cdots\}$ respectively representing phase-volume preserving dynamics and stochastic damping. The zeroth law implies stationary distribution $u^{ss}(x)=e^{-\phi(x)}$. We find an orthogonality $\nabla\phi\cdot g=0$ as a hallmark of the system. Stochastic thermodynamics based on time reversal $\big(t,\phi,g\big)\rightarrow\big(-t,\phi,-g\big)$ is formulated: entropy production $e_p^{\#}(t)=-dF(t)/dt$; generalized "heat" $h_d^{\#}(t)=-dU(t)/dt$, $U(t)=\int_{\mathbb{R}^n} \phi(x)u(x,t)dx$ being "internal energy", and "free energy" $F(t)=U(t)+\int_{\mathbb{R}^n} u(x,t)\ln u(x,t)dx$ never increases. Entropy follows $\frac{dS}{dt}=e_p^{\#}-h_d^{\#}$. Our formulation is shown to be consistent with an earlier theory of P. Ao. Its contradistinctions to other theories, potential-flux decomposition, stochastic Hamiltonian system with even and odd variables, Klein-Kramers equation, Freidlin-Wentzell's theory, and GENERIC, are discussed.Comment: 25 page

A business model perspective for ICTs in public engagement

This is the post-print version of the Article. The official published article can be accessed from the link below - Copyright @ 2012 ElsevierPublic institutions, in their efforts to promote meaningful citizen engagement, are increasingly looking at the democratic potential of Information and Communication Technologies (ICTs). Previous studies suggest that such initiatives seem to be impeded by socio-technical integration barriers such as low sustainability, poor citizen acceptance, coordination difficulties, lack of understanding and failure to assess their impact. Motivated by these shortcomings, the paper develops and applies a business model perspective as an interceding framework for analysis and evaluation. The underlying principle behind this approach is that it is not technology per se which determines success, but rather the way in which the businessmodel of the technological artifact is configured and employed to achieve the strategic goals. The business model perspective is empirically demonstrated with the case of an online petitioning system implemented by a UK local authority. The case illustrates the importance of considering ICTs in public engagement from a holistic view to make them more manageable and assessable

Entomologic and molecular investigation into Plasmodium vivax transmission in Singapore, 2009

<p>Abstract</p> <p>Background</p> <p>Singapore has been certified malaria free since November 1982 by the World Health Organization and despite occasional local transmission, the country has maintained the standing. In 2009, three clusters of malaria cases were reported in Singapore.</p> <p>Methods</p> <p>Epidemiological, entomological and molecular studies were carried out to investigate the three clusters, namely Mandai-Sungei Kadut, Jurong Island and Sembawang.</p> <p>Results</p> <p>A total of 29 malaria patients, with no recent travel history, were reported in the three clusters. Molecular analysis based on the <it>msp3α </it>and <it>msp1 </it>genes showed two independent local transmissions: one in Mandai-Sungei Kadut and another in Sembawang. Almost all cases within each cluster were epidemiologically linked. In Jurong Island cluster, epidemiological link remains uncertain, as almost all cases had a unique genetic profile. Only two cases shared a common profile and were found to be linked to the Mandai-Sungei Kadut cluster. Entomological investigation found <it>Anopheles sinensis </it>to be the predominant Anopheline in the two areas where local transmission of <it>P. vivax </it>was confirmed. <it>Anopheles sinensis </it>was found to be attracted to human bait and bites as early as 19:45 hrs. However, all <it>Anopheles </it>mosquitoes caught were negative for sporozoites and oocysts by dissection.</p> <p>Conclusion</p> <p>Investigation of <it>P. vivax </it>cases from the three cluster areas confirmed the occurrence of local transmission in two areas. Although <it>An. sinensis </it>was the predominant Anopheline found in areas with confirmed transmission, the vector/s responsible for the outbreaks still remains cryptic.</p

Improved orthogonal array based simulated annealing for design optimization

Recent research shows that simulated annealing with orthogonal array based neighbourhood functions can help in the search for a solution to a parametrical problem which is closer to an optimum when compared with conventional simulated annealing. Previous studies of simulated annealing analyzed only the main effects of variables of parametrical problems. In fact, both main effects of variables and interactions between variables should be considered, since interactions between variables exist in many parametrical problems. In this paper, an improved orthogonal array based neighbourhood function (IONF) for simulated annealing with the consideration of interaction effects between variables is described. After solving a set of parametrical benchmark function problems where interaction effects between variables exist, results of the benchmark tests show that the proposed simulated annealing algorithm with the IONF outperforms significantly both the simulated annealing algorithms with the existing orthogonal array based neighbourhood functions and the standard neighbourhood functions. Finally, the improved orthogonal array based simulated annealing was applied on the optimization of emulsified dynamite packing-machine design by which the applicability of the algorithm in real world problems can be evaluated and its effectiveness can be further validated