Molecular diagnosis of peste des petits ruminants virus (PPR) in goats and sheep populations

Peste des petits ruminants (PPR) is an economically important viral disease of goats and sheep. The disease is confused clinically with other infections such as the mild strain of rinderpest in small ruminants. Effective control measures for PPR need that a proper and rapid diagnostic technique of disease. Therefore, the use of reverse transcriptase-polymerase chain reaction (RT-PCR) to detect suspected field samples collected from diseased goats and sheep in Dammam city, Kingdom of Saudia Arabia (KSA) has helped to give an effective diagnosis that was needed to control measure of the spread of the disease. This assay is based on the rapid purification of RNA on glass beads followed by the reverse transcription-polymerase chain reaction (RT-PCR). The primers (NP3/NP4) were used to amplify specifically a fragment of about 350 bp, that technique has a more specific and sensitive method for rapid diagnosis of disease.Key words: Peste des petits ruminants virus; reverse transcriptase polymerase chain reaction; diagnosis; goats; shee

Exogenous glutathione-mediated tolerance to deficit irrigation in salt-affected Capsicum frutescence (L.) plants is connected with higher antioxidant content and ionic homeostasis

As an important medicinal plant used in traditional and modern medicine, chili peppers are sensitive or moderately sensitive to drought or salt stress, respectively. Therefore, potential changes due to foliar-applied glutathione (GSH; 0, 0.4 and 0.8 mM) response on growth, yield, and physio-biochemical attributes, as well as water use efficiency (WUE) and fruit alkaloid capsaicin of chili pepper plants were investigated when grown under deficit irrigation in salt-affected soil (EC = 6.74 dS m–1). Two deficit irrigation water (DiW) regimes (80% and 60% of soil field capacity; FC) were used versus 100% of FC as a control. Both DiW treatments negatively affected growth and yield parameters, SPAD chlorophyll index, nutrient status, K+/Na+ ratio, and plant anatomical features. In contrast, osmoprotectants, ascorbate, glutathione, capsaicin, and phenolic contents, as well as WUE were increased in association with higher Na+ and Cl– contents. However, exogenously-applied GSH caused significant increases in the above-mentioned parameters along with an additional increase in osmoprotectants, antioxidants, and capsaicin contents, and a decrease in Na+ and Cl– levels compared to corresponding controls. The highest WUE, growth, and fruit yield responses were recorded at 0.8 mM GSH applied to plants under DiW at 80% FC + salinity (6.74 dS m–1). Therefore, this study suggested the use of leafy-applied GSH at 0.8 mM for satisfactory growth and yield with the highest WUE of chili pepper plants grown under salt-affected conditions with deficit irrigation

Expression of RFC/SLC19A1 is Associated with Tumor Type in Bladder Cancer Patients

Urinary bladder cancer (UBC) ranks ninth in worldwide cancer. In Egypt, the pattern of bladder cancer is unique in that both the transitional and squamous cell types prevail. Despite much research on the topic, it is still difficult to predict tumor progression, optimal therapy and clinical outcome. The reduced folate carrier (RFC/SLC19A1) is the major transport system for folates in mammalian cells and tissues. RFC is also the primary means of cellular uptake for antifolate cancer chemotherapeutic drugs, however, membrane transport of antifolates by RFC is considered as limiting to antitumor activity. The purpose of this study was to compare the mRNA expression level of RFC/SLC19A1 in urothelial and non-urothelial variants of bladder carcinomas. Quantification of RFC mRNA in the mucosa of 41 untreated bladder cancer patients was performed using RT-qPCR. RFC mRNA steady-state levels were ∼9-fold higher (N = 39; P<0.0001) in bladder tumor specimens relative to normal bladder mRNA. RFC upregulation was strongly correlated with tumor type (urothelial vs. non-urothelial; p<0.05) where median RFC mRNA expression was significantly (p<0.05) higher in the urothelial (∼14-fold) compared to the non-urothelial (∼4-fold) variant. This may account for the variation in response to antifolate-containing regimens used in the treatment of either type. RFC mRNA levels were not associated with tumor grade (I, II and III) or stage (muscle-invasive vs. non-muscle invasive) implying that RFC cannot be used for prognostic purposes in bladder carcinomas and its increased expression is an early event in human bladder tumors pathogenesis. Further, RFC can be considered as a potential marker for predicting response to antifolate chemotherapy in urothelial carcinomas

Antimicrobial resistance among migrants in Europe: a systematic review and meta-analysis

BACKGROUND: Rates of antimicrobial resistance (AMR) are rising globally and there is concern that increased migration is contributing to the burden of antibiotic resistance in Europe. However, the effect of migration on the burden of AMR in Europe has not yet been comprehensively examined. Therefore, we did a systematic review and meta-analysis to identify and synthesise data for AMR carriage or infection in migrants to Europe to examine differences in patterns of AMR across migrant groups and in different settings. METHODS: For this systematic review and meta-analysis, we searched MEDLINE, Embase, PubMed, and Scopus with no language restrictions from Jan 1, 2000, to Jan 18, 2017, for primary data from observational studies reporting antibacterial resistance in common bacterial pathogens among migrants to 21 European Union-15 and European Economic Area countries. To be eligible for inclusion, studies had to report data on carriage or infection with laboratory-confirmed antibiotic-resistant organisms in migrant populations. We extracted data from eligible studies and assessed quality using piloted, standardised forms. We did not examine drug resistance in tuberculosis and excluded articles solely reporting on this parameter. We also excluded articles in which migrant status was determined by ethnicity, country of birth of participants' parents, or was not defined, and articles in which data were not disaggregated by migrant status. Outcomes were carriage of or infection with antibiotic-resistant organisms. We used random-effects models to calculate the pooled prevalence of each outcome. The study protocol is registered with PROSPERO, number CRD42016043681. FINDINGS: We identified 2274 articles, of which 23 observational studies reporting on antibiotic resistance in 2319 migrants were included. The pooled prevalence of any AMR carriage or AMR infection in migrants was 25·4% (95% CI 19·1-31·8; I2 =98%), including meticillin-resistant Staphylococcus aureus (7·8%, 4·8-10·7; I2 =92%) and antibiotic-resistant Gram-negative bacteria (27·2%, 17·6-36·8; I2 =94%). The pooled prevalence of any AMR carriage or infection was higher in refugees and asylum seekers (33·0%, 18·3-47·6; I2 =98%) than in other migrant groups (6·6%, 1·8-11·3; I2 =92%). The pooled prevalence of antibiotic-resistant organisms was slightly higher in high-migrant community settings (33·1%, 11·1-55·1; I2 =96%) than in migrants in hospitals (24·3%, 16·1-32·6; I2 =98%). We did not find evidence of high rates of transmission of AMR from migrant to host populations. INTERPRETATION: Migrants are exposed to conditions favouring the emergence of drug resistance during transit and in host countries in Europe. Increased antibiotic resistance among refugees and asylum seekers and in high-migrant community settings (such as refugee camps and detention facilities) highlights the need for improved living conditions, access to health care, and initiatives to facilitate detection of and appropriate high-quality treatment for antibiotic-resistant infections during transit and in host countries. Protocols for the prevention and control of infection and for antibiotic surveillance need to be integrated in all aspects of health care, which should be accessible for all migrant groups, and should target determinants of AMR before, during, and after migration. FUNDING: UK National Institute for Health Research Imperial Biomedical Research Centre, Imperial College Healthcare Charity, the Wellcome Trust, and UK National Institute for Health Research Health Protection Research Unit in Healthcare-associated Infections and Antimictobial Resistance at Imperial College London

Surgical site infection after gastrointestinal surgery in high-income, middle-income, and low-income countries: a prospective, international, multicentre cohort study

Background: Surgical site infection (SSI) is one of the most common infections associated with health care, but its importance as a global health priority is not fully understood. We quantified the burden of SSI after gastrointestinal surgery in countries in all parts of the world. Methods: This international, prospective, multicentre cohort study included consecutive patients undergoing elective or emergency gastrointestinal resection within 2-week time periods at any health-care facility in any country. Countries with participating centres were stratified into high-income, middle-income, and low-income groups according to the UN's Human Development Index (HDI). Data variables from the GlobalSurg 1 study and other studies that have been found to affect the likelihood of SSI were entered into risk adjustment models. The primary outcome measure was the 30-day SSI incidence (defined by US Centers for Disease Control and Prevention criteria for superficial and deep incisional SSI). Relationships with explanatory variables were examined using Bayesian multilevel logistic regression models. This trial is registered with ClinicalTrials.gov, number NCT02662231. Findings: Between Jan 4, 2016, and July 31, 2016, 13 265 records were submitted for analysis. 12 539 patients from 343 hospitals in 66 countries were included. 7339 (58·5%) patient were from high-HDI countries (193 hospitals in 30 countries), 3918 (31·2%) patients were from middle-HDI countries (82 hospitals in 18 countries), and 1282 (10·2%) patients were from low-HDI countries (68 hospitals in 18 countries). In total, 1538 (12·3%) patients had SSI within 30 days of surgery. The incidence of SSI varied between countries with high (691 [9·4%] of 7339 patients), middle (549 [14·0%] of 3918 patients), and low (298 [23·2%] of 1282) HDI (p < 0·001). The highest SSI incidence in each HDI group was after dirty surgery (102 [17·8%] of 574 patients in high-HDI countries; 74 [31·4%] of 236 patients in middle-HDI countries; 72 [39·8%] of 181 patients in low-HDI countries). Following risk factor adjustment, patients in low-HDI countries were at greatest risk of SSI (adjusted odds ratio 1·60, 95% credible interval 1·05–2·37; p=0·030). 132 (21·6%) of 610 patients with an SSI and a microbiology culture result had an infection that was resistant to the prophylactic antibiotic used. Resistant infections were detected in 49 (16·6%) of 295 patients in high-HDI countries, in 37 (19·8%) of 187 patients in middle-HDI countries, and in 46 (35·9%) of 128 patients in low-HDI countries (p < 0·001). Interpretation: Countries with a low HDI carry a disproportionately greater burden of SSI than countries with a middle or high HDI and might have higher rates of antibiotic resistance. In view of WHO recommendations on SSI prevention that highlight the absence of high-quality interventional research, urgent, pragmatic, randomised trials based in LMICs are needed to assess measures aiming to reduce this preventable complication

Comprehensive Analysis and Stabilization of a B2B HVDC System Connecting Two Extremely Weak Grids Considering the Impact of Power Feedforward Compensation

Back-to-Back (B2B) HVDC systems can enhance cross-regional transmission capacity and overall power system stability. However, their use in interconnecting two extremely weak grids can compromise system stability. This paper presents a comprehensive stability analysis of a B2B HVDC system to distinguish the root causes of instability mechanisms and identify the critical short circuit ratio (CSCR) of each converter station under inverter and rectifier operations considering the impact of power feedforward compensation of the dc-bus voltage controller. The study also investigates the stability implications and CSCR changes when a dc transmission line connects the converter stations, creating a point-to-point (P2P) HVDC system. Eigenvalue analysis, based on detailed small-signal modeling, showed that three distinct instability mechanisms, high-, low-, and medium-frequency instabilities, can compromise the operation of VSC stations under extremely weak grid conditions. Notably, the medium-frequency instability observed in the P2P HVDC system during inverter operation is predominantly caused by the power feedforward compensation of the dc-bus voltage controller. Furthermore, the analysis reveals that the CSCRs for dc-bus voltage-controlled VSC stations are higher in comparison to power-controlled ones. This suggests that a dc-bus voltage-controlled VSC is more susceptible to instability in weak grid scenarios than its power-controlled counterpart. Active compensators are designed based on participation factor analysis to mitigate the identified instabilities. The findings are validated with extensive simulations and real-time hardware-in-the-loop tests, demonstrating the analysis&#x0027;s accuracy and the proposed compensators' efficacy

Groundwater Rising as Environmental Problem, Causes and Solutions: Case Study from Aswan City, Upper Egypt

International audienc

Time Series Forecasting Using Tree Based Methods

This paper aims to use the tree-based methods for time series data forecasting and compare between Decision Tree (DT), Random Forest (RF), Gradient Boosted Trees (GBT) and ARIMA model to predict monthly gold prices. The time series data for the monthly gold prices was used during the period from Nov-1989 to Dec-2019, which represents 362 observations. ARIMA, DT, RF, and GBT models were fitted based on 90% of data as training set. Then, their accuracy was compared using the statistical measure RMSE. The results indicated that RF was better than DT, GBT and ARIMA (0,1,1) in predicting future gold prices, based on RMSE= 38.52