Skymrion lattice melting in the quantum Hall system

The melting and magnetic disordering of the skyrmion lattice in the quantum Hall system at filling factor $\nu\approx 1$ are studied. A Berezinskii-Kosterlitz-Thouless renormalization group theory is employed to describe the coupled magnetic and translational degrees of freedom. The non-trivial magnetic properties of the skyrmion system stem from the in-plane components of the non-collinear magnetization in the vicinity of skyrmions, which are described by an antiferromagnetic XY model. In a Coulomb gas formulation the `particles' are the topological defects of the XY model (vortices) and of the lattice (dislocations and disclinations). The latter frustrate the antiferromagnetic order and acquire fractional vorticity in order to minimize their energy. We find a number of melting/disordering scenarios for various lattice types. While these results do not depend on a particular model, we also consider a simple classical model for the skyrmion system. It results in a rich T=0 phase diagram. We propose that the triangular and square skyrmion lattices are generically separated by a centered rectangular phase in the quantum Hall system.Comment: 15 pages with 5 figures. Minor revisions. Important reference to M. Rao, S. Sengupta, and R. Shankar, Phys. Rev. Lett. 79, 3998 (1997) adde

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

We show the distribution of SARS-CoV-2 genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three available genomic nomenclature systems for SARS-CoV-2 to all sequence data from the WHO European Region available during the COVID-19 pandemic until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation. We provide a comparison of the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.Peer reviewe

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

To prevent new infections with human immunodeficiency virus type 1 (HIV-1) in sub-Saharan Africa, UNAIDS recommends targeting interventions to populations that are at high risk of acquiring and passing on the virus. Yet it is often unclear who and where these ‘source’ populations are. Here we demonstrate how viral deep-sequencing can be used to reconstruct HIV-1 transmission networks and to infer the direction of transmission in these networks. We are able to deep-sequence virus from a large population-based sample of infected individuals in Rakai District, Uganda, reconstruct partial transmission networks, and infer the direction of transmission within them at an estimated error rate of 16.3% [8.8–28.3%]. With this error rate, deep-sequence phylogenetics cannot be used against individuals in legal contexts, but is sufficiently low for population-level inferences into the sources of epidemic spread. The technique presents new opportunities for characterizing source populations and for targeting of HIV-1 prevention interventions in Africa

Direct dating of Neolithic pottery: progress and prospects

Pottery sherds can be dated by four methods: (i) stylistic features; (ii) luminescence analysis of minerals within the sherd; (iii) 14C assay of carbon on or within the sherd; and (iv) archaeomagnetic intensity of the sherd. Each method has its own sources of uncertainty. The results obtained by the various methods are reviewed, and the conclusion reached that a combination of at least two of the methods, where possible, is recommended in order to enhance confidence in the validity of the outcome