Monitoring of chronic wasting disease (CWD) (IV)

The European Commission requested an analysis of the Chronic Wasting Disease (CWD) monitoring programme in Norway, Sweden, Finland, Iceland, Estonia, Latvia, Lithuania and Poland (9 January 2017–28 February 2022). Thirteen cases were detected in reindeer, 15 in moose and 3 in red deer. They showed two phenotypes, distinguished by the presence or absence of detectable disease-associated normal cellular prion protein (PrP) in lymphoreticular tissues. CWD was detected for the first time in Finland, Sweden and in other areas of Norway. In countries where the disease was not detected, the evidence was insufficient to rule out its presence altogether. Where cases were detected, the prevalence was below 1%. The data also suggest that the high-risk target groups for surveillance should be revised, and ‘road kill’ removed. Data show that, in addition to differences in age and sex, there are differences in the prion protein gene (PRNP) genotypes between positive and negative wild reindeer. A stepwise framework has been proposed with expanded minimum background surveillance to be implemented in European countries with relevant cervid species. Additional surveillance may include ad hoc surveys for four different objectives, specific to countries with/without cases, focusing on parallel testing of obex and lymph nodes from adult cervids in high-risk target groups, sustained over time, using sampling units and a data-driven design prevalence. Criteria for assessing the probability of CWD presence have been outlined, based on the definition of the geographical area, an annual assessment of risk of introduction, sustained minimum background surveillance, training and engagement of stakeholders and a surveillance programme based on data-driven parameters. All positive cases should be genotyped. Sample sizes for negative samples have been proposed to detect and estimate the frequency of PRNP polymorphisms. Double-strand sequencing of the entire PRNP open reading frame should be undertaken for all selected samples, with data collated in a centralised collection system at EU level.info:eu-repo/semantics/publishedVersio

Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: the challenge ahead.

Lifestyle factors are responsible for a considerable portion of cancer incidence worldwide, but credible estimates from the World Health Organization and the International Agency for Research on Cancer (IARC) suggest that the fraction of cancers attributable to toxic environmental exposures is between 7% and 19%. To explore the hypothesis that low-dose exposures to mixtures of chemicals in the environment may be combining to contribute to environmental carcinogenesis, we reviewed 11 hallmark phenotypes of cancer, multiple priority target sites for disruption in each area and prototypical chemical disruptors for all targets, this included dose-response characterizations, evidence of low-dose effects and cross-hallmark effects for all targets and chemicals. In total, 85 examples of chemicals were reviewed for actions on key pathways/mechanisms related to carcinogenesis. Only 15% (13/85) were found to have evidence of a dose-response threshold, whereas 59% (50/85) exerted low-dose effects. No dose-response information was found for the remaining 26% (22/85). Our analysis suggests that the cumulative effects of individual (non-carcinogenic) chemicals acting on different pathways, and a variety of related systems, organs, tissues and cells could plausibly conspire to produce carcinogenic synergies. Additional basic research on carcinogenesis and research focused on low-dose effects of chemical mixtures needs to be rigorously pursued before the merits of this hypothesis can be further advanced. However, the structure of the World Health Organization International Programme on Chemical Safety 'Mode of Action' framework should be revisited as it has inherent weaknesses that are not fully aligned with our current understanding of cancer biology

Photometric redshifts in the SWIRE Survey

We present the SWIRE Photometric Redshift Catalogue, 1025119 redshifts of unprecedented reliability and accuracy. Our method is based on fixed galaxy and QSO templates applied to data at 0.36-4.5 mu, and on a set of 4 infrared emission templates fitted to infrared excess data at 3.6-170 mu. The code involves two passes through the data, to try to optimize recognition of AGN dust tori. A few carefully justified priors are used and are the key to supression of outliers. Extinction, A_V, is allowed as a free parameter. We use a set of 5982 spectroscopic redshifts, taken from the literature and from our own spectroscopic surveys, to analyze the performance of our method as a function of the number of photometric bands used in the solution and the reduced chi^2. For 7 photometric bands the rms value of (z_{phot}-z_{spec})/(1+z_{spec}) is 3.5%, and the percentage of catastrophic outliers is ~1%. We discuss the redshift distributions at 3.6 and 24 mu. In individual fields, structure in the redshift distribution corresponds to clusters which can be seen in the spectroscopic redshift distribution. 10% of sources in the SWIRE photometric redshift catalogue have z >2, and 4% have z>3, so this catalogue is a huge resource for high redshift galaxies. A key parameter for understanding the evolutionary status of infrared galaxies is L_{ir}/L_{opt}, which can be interpreted as the specific star-formation rate for starbursts. For dust tori around Type 1 AGN, L_{tor}/L_{opt} is a measure of the torus covering factor and we deduce a mean covering factor of 40%.Comment: 22 pages, 23 figures. Accepted for publication in MNRAS. Revised 28/2/08. Version with figures at full resolution at http://astro.ic.ac.uk/~mrr/swirephotzcat/swirephotz5.pdf.g

Galaxy Counts at 24 Microns in the SWIRE Fields

This paper presents galaxy source counts at 24 microns in the six Spitzer Wide-field InfraRed Extragalactic (SWIRE) fields. The source counts are compared to counts in other fields, and to model predictions that have been updated since the launch of Spitzer. This analysis confirms a very steep rise in the Euclidean-normalized differential number counts between 2 mJy and 0.3 mJy. Variations in the counts between fields show the effects of sample variance in the flux range 0.5-10 mJy, up to 100% larger than Poisson errors. Nonetheless, a "shoulder" in the normalized counts persists at around 3 mJy. The peak of the normalized counts at 0.3 mJy is higher and narrower than most models predict. In the ELAIS N1 field, the 24 micron data are combined with Spitzer-IRAC data and five-band optical imaging, and these bandmerged data are fit with photometric redshift templates. Above 1 mJy the counts are dominated by galaxies at z less than 0.3. By 300 microJy, about 25% are between z ~ 0.3-0.8, and a significant fraction are at z ~ 1.3-2. At low redshifts the counts are dominated by spirals, and starbursts rise in number density to outnumber the spirals' contribution to the counts below 1 mJy.Comment: 10 pages, 8 figures, accepted 3 November 2007 for publication in The Astronomical Journal, formatted with emulateapj styl

The MeerKAT international GHz tiered extragalactic exploration (MIGHTEE) survey

The MIGHTEE large survey project will survey four of the most well-studied extragalactic deep fields, totalling 20 square degrees to µJy sensitivity at Giga-Hertz frequencies, as well as an ultra-deep image of a single ∼1 deg2 MeerKAT pointing. The observations will provide radio continuum, spectral line and polarisation information. As such, MIGHTEE, along with the excellent multi-wavelength data already available in these deep fields, will allow a range of science to be achieved. Specifically, MIGHTEE is designed to significantly enhance our understanding of, (i) the evolution of AGN and star-formation activity over cosmic time, as a function of stellar mass and environment, free of dust obscuration; (ii) the evolution of neutral hydrogen in the Universe and how this neutral gas eventually turns into stars after moving through the molecular phase, and how efficiently this can fuel AGN activity; (iii) the properties of cosmic magnetic fields and how they evolve in clusters, filaments and galaxies. MIGHTEE will reach similar depth to the planned SKA all-sky survey, and thus will provide a pilot to the cosmology experiments that will be carried out by the SKA over a much larger survey volume

Lessons Learned From the United States Ocean Observatories Initiative

The Ocean Observatories Initiative (OOI) is a United States National Science Foundation-funded major research facility that provides continuous observations of the ocean and seafloor from coastal and open ocean locations in the Atlantic and Pacific. Multiple cycles of OOI infrastructure deployment, recovery, and refurbishment have occurred since operations began in 2014. This heterogeneous ocean observing infrastructure with multidisciplinary sampling in important but challenging locations has provided new scientific and engineering insights into the operation of a sustained ocean observing system. This paper summarizes the challenges, successes, and failures experienced to date and shares recommendations on best practices that will be of benefit to the global ocean observing community

Photometric redshifts for the next generation of deep radio continuum surveys - I: template fitting

We present a study of photometric redshift performance for galaxies and active galactic nuclei detected in deep radio continuum surveys. Using two multi-wavelength datasets, over the NOAO Deep Wide Field Survey Boötes and COSMOS fields, we assess photometric redshift (photo-z) performance for a sample of 4; 500 radio continuum sources with spectroscopic redshifts relative to those of 63; 000 non radio-detected sources in the same fields. We investigate the performance of three photometric redshift template sets as a function of redshift, radio luminosity and infrared/X-ray properties. We find that no single template library is able to provide the best performance across all subsets of the radio detected population, with variation in the optimum template set both between subsets and between fields. Through a hierarchical Bayesian combination of the photo-z estimates from all three template sets, we are able to produce a consensus photo-z estimate which equals or improves upon the performance of any individual template set