Relative Quantification of Several Plasma Proteins during Liver Transplantation Surgery

Plasma proteome is widely used in studying changes occurring in human body during disease or other disturbances. Immunological methods are commonly used in such studies. In recent years, mass spectrometry has gained popularity in high-throughput analysis of plasma proteins. In this study, we tested whether mass spectrometry and iTRAQ-based protein quantification might be used in proteomic analysis of human plasma during liver transplantation surgery to characterize changes in protein abundances occurring during early graft reperfusion. We sampled blood from systemic circulation as well as blood entering and exiting the liver. After immunodepletion of six high-abundant plasma proteins, trypsin digestion, iTRAQ labeling, and cation-exchange fractionation, the peptides were analyzed by reverse phase nano-LC-MS/MS. In total, 72 proteins were identified of which 31 could be quantified in all patient specimens collected. Of these 31 proteins, ten, mostly medium-to-high abundance plasma proteins with a concentration range of 50–2000 mg/L, displayed relative abundance change of more than 10%. The changes in protein abundance observed in this study allow further research on the role of several proteins in ischemia-reperfusion injury during liver transplantation and possibly in other surgery

A methodological guide to observe local-scale geodiversity for biodiversity research and management

Current global environmental change calls for comprehensive and complementing approaches for biodiversity conservation. According to recent research, consideration of the diversity of Earth's abiotic features (i.e. geodiversity) could provide new insights and applications into the investigation and management of biodiversity. However, methods to map and quantify geodiversity at local scale have not been developed although this scale is important for conservation planning. Here, we introduce a field methodology for observing plot-scale geodiversity, pilot the method in an Arctic–alpine tundra environment, provide empirical evidence on the plot-scale biodiversity–geodiversity relationship and give guidance for practitioners on the implementation of the method. The field method is based on observation of geofeatures, that is, elements of geology, geomorphology and hydrology, from a given area surrounding a location of species observations. As a result, the method provides novel information on the variation of abiotic nature for biodiversity research and management. The method was piloted in northern Norway and Finland by observing geofeatures from 76 sites at three scales (5, 10 and 25 m radii). To explore the relationship between measures of biodiversity and geodiversity, the occurrence of vascular plant species was recorded from 2 m × 2 m plots at the same sites. According to the results, vascular plant species richness was positively correlated with the richness of geofeatures (Rs = 0.18–0.59). The connection was strongest in habitats characterized by deciduous shrubs. The method has a high potential for observing geofeatures without extensive geological or geomorphological training or field survey experience and could be applied by conservation practitioners. Synthesis and applications. Consideration of geodiversity in understanding, analysing and conserving biodiversity could facilitate environmental management and ensure the long-term sustainability of ecosystem functions. With the developed method, it is possible to cost-efficiently observe the elements of geodiversity that are useful in ecology and biodiversity conservation. Our approach can be adapted in different ecosystems and biodiversity investigations. The method can be adjusted depending on the abiotic conditions, expertise of the observer(s) and the equipment available.publishedVersio

Combining geodiversity with climate and topography to account for threatened species richness

Improved understanding of threatened species diversity is important for long-term conservation planning and natural area management, especially under ongoing global change. Geodiversity – the diversity of earth surface materials, forms and processes – may be a useful biodiversity surrogate for conservation planning, as well as having conservation value itself. Links between geodiversity and species richness have been demonstrated; establishing whether geodiversity also relates to threatened species’ diversity and distribution patterns is a logical next step for conservation biology. We used four geodiversity variables (rock type richness, soil type richness, geomorphological diversity, hydrological diversity), in addition to four climatic and topographic variables, to account for threatened species diversity across 31 of Finland’s national parks. We also analyzed rarity-weighted richness (a measure of site complementarity) of threatened vascular plants, fungi, bryophytes, and all species combined. Our 1km2-resolution dataset included 271 threatened species from 16 major taxa. We modeled threatened species richness (raw and rarity-weighted) using boosted regression trees. Commonly used climatic variables, especially the annual temperature sum above 5°C, dominated our models, consistent with the critical role of temperature in this boreal environment. Importantly, geodiversity added significant explanatory power, improving our understanding of threatened species. Greater geodiversity was consistently associated with increased threatened species richness across taxa; the combined effect of geodiversity variables was greater still in the rarity-weighted richness analyses (except for fungi). Geodiversity measures correlated most strongly with 3 species richness (raw and rarity-weighted) of threatened vascular plants and bryophytes; such correlations were weakest for molluscs, lichens, and mammals. While it is well known that simple measures of topography improve biodiversity modeling and conservation practice, our results suggest that geodiversity data relating to geology, landforms, and hydrology are also worth including. This reinforces recent arguments that ‘conserving Nature’s stage’ is an important principle in conservation

Measuring functional outcome in upper extremity soft-tissue sarcoma : Validation of the Toronto extremity salvage score and the QuickDASH patient-reported outcome instruments

Interest in functional outcome (FO) and health-related quality of life (HRQL) in extremity soft-tissue sarcoma (STS) patients has increased. The aim of this study was to validate two FO questionnaires for upper extremity STS patients: the Toronto Extremity Salvage Score (TESS) and short version of the Disability of Arm, Shoulder and Hand (QuickDASH), based on Finnish population data. A multi-center study was conducted at two academic sarcoma centers. Surgically treated upper extremity STS patients were invited to participate. Patients completed the TESS and the QuickDASH with HRQL questionnaires the 15D and the QLQ-C30. The scores were analyzed and compared. Fifty-five patients with a mean follow-up period of 4.7 years were included. Mean age was 63 years (standard deviation [SD] 14.6). The mean score for TESS was 88.5 (SD 15.1) and for QuickDASH 17.8 (SD 19.6). The QuickDASH had a statistically significantly better score coverage. A ceiling effect was noted, 27% and 20% for TESS and QuickDASH, respectively. The TESS and QuickDASH scores were strongly correlated ( r =-0.89). The TESS score strongly correlated with the QLQ-C30 ( r = 0.79) and the 15D score ( r = 0.70). The QuickDASH score correlated strongly with the QLQ-C30 score ( r =-0.71) and moderately with the 15D score ( r =-0.56). The TESS score had a statistically significantly stronger correlation with the 15D score than QuickDASH ( p < 0.005). Both the TESS and the QuickDASH provide reliable scores for assessing FO in upper extremity STS patients. The QuickDASH has a better coverage, whereas TESS showed a stronger correlation to HRQL scores. (c) 2022 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. This is an open access article under the CC BY license ( http://creativecommons.org/licenses/by/4.0/ )Peer reviewe

Assessing the relation between geodiversity and species richness in mountain heaths and tundra landscapes

Context Recent studies show that geodiversity—the diversity of Earth's landforms, materials, and processes—has a positive relationship with biodiversity at a landscape scale. However, there is a substantial lack of evidence from finer scales, although this knowledge could improve the understanding of biodiversity patterns. Objectives We investigate whether plot-scale geodiversity and plant species richness (vascular plants, bryophytes, lichens, and total richness) are positively linked in different tundra landscapes. Methods We collected geodiversity (presence of different geofeatures) and plant species richness data from 165 sites in three distinct regions: isolated low-lying mountain heaths, and in sporadic and continuous mountain heaths and tundra. We used non-metric multidimensional scaling (NMDS) ordination to explore the correlations between the composition of geofeatures and species richness, followed by univariate and multivariate generalized linear models (GLM), to assess whether georichness is important for species richness. Results Geofeature composition was linked to species richness in all regions, as indicated by NMDS ordination. Both univariate and multivariate GLM models showed statistically significant relationship between species richness and georichness in all studied species richness groups in continuous Arctic-alpine tundra. Additionally, there was a positive link between georichness and lichen richness in isolated boreal mountain tops. Main conclusions We showed that plot-scale geodiversity has a positive relationship with species richness, yet the effect varies regionally and between species groups. Our study provides strong empirical evidence that geodiversity supports species richness in continuous Arctic-alpine tundra. This information can be used in species richness models but also be applied in biodiversity management and conservation.publishedVersio

Acknowledging geodiversity in safeguarding biodiversity and human health

Our existence on Earth is founded on a vital nature, which supports human physical and mental health. However, nature is often depicted only through biodiversity, whereas geodiversity—the diversity of non-living nature—has so far been neglected. Geodiversity consists of assemblages, structures, and systems of geological, geomorphological, soil, and hydrological components that fundamentally underlie biodiversity. Biodiversity can support overall human health only with the foundation of geodiversity. Landscape characteristics, such as varying topography or bodies of water, promote aesthetic and sensory experiences and are also a product of geodiversity. In this Personal View, we introduce the concept of geodiversity as a driver for planetary health, describe its functions and services, and outline the intricate relationships between geodiversity, biodiversity, and human health. We also propose an agenda for acknowledging the importance of geodiversity in health-related research and decision making. Geodiversity is an emerging topic with untapped potential for ensuring ecosystem functionality and good living conditions for people in a time of changing environments

Does catchment geodiversity foster stream biodiversity?

Context One approach to maintain the resilience of biotic communities is to protect the variability of abiotic characteristics of Earth's surface, i.e. geodiversity. In terrestrial environments, the relationship between geodiversity and biodiversity is well recognized. In streams, the abiotic properties of upstream catchments influence stream communities, but the relationships between catchment geodiversity and aquatic biodiversity have not been previously tested. Objectives The aim was to compare the effects of local environmental and catchment variables on stream biodiversity. We specifically explored the usefulness of catchment geodiversity in explaining the species richness on stream macroinvertebrate, diatom and bacterial communities. Methods We used 3 geodiversity variables, 2 land use variables and 4 local habitat variables to examine species richness variation across 88 stream sites in western Finland. We used boosted regression trees to explore the effects of geodiversity and other variables on biodiversity. Results We detected a clear effect of catchment geodiversity on species richness, although the traditional local habitat and land use variables were the strongest predictors. Especially soil-type richness appeared as an important factor for species richness. While variables related to stream size were the most important for macroinvertebrate richness and partly for bacterial richness, the importance of water chemistry and land use for diatom richness was notable. Conclusions In addition to traditional environmental variables, geodiversity may affect species richness variation in streams, for example through changes in water chemistry. Geodiversity information could be used as a proxy for predicting stream species richness and offers a supplementary tool for conservation efforts.peerReviewe

Too much diversity—Multiple definitions of geodiversity hinder its potential in biodiversity research

Geodiversity—the diversity of abiotic features and pro-cesses of the Earth's surface and subsurface—is an increasingly used concept in ecological research. A growing body of scientific literature has provided evidence of positive links between geodiversity and biodiversity. These studies highlight the potential of geodiversity to improve our understanding of biodiversity patterns and to complement current biodiversity conservation practices and strategies. However, definitions of geodiversity in eco-logical research vary widely. This can hinder the progress of geodiversity–biodiversity research and make it difficult to synthesize findings across studies. We therefore call for greater awareness of how geodiversity is currently defined and for more consistent use of the term ‘geodi-versity’ in biodiversity research

Causal effect of plasminogen activator inhibitor type 1 on coronary heart disease

Background--Plasminogen activator inhibitor type 1 (PAI-1) plays an essential role in the fibrinolysis system and thrombosis. Population studies have reported that blood PAI-1 levels are associated with increased risk of coronary heart disease (CHD). However, it is unclear whether the association reflects a causal influence of PAI-1 on CHD risk. Methods and Results--To evaluate the association between PAI-1 and CHD, we applied a 3-step strategy. First, we investigated the observational association between PAI-1 and CHD incidence using a systematic review based on a literature search for PAI-1 and CHD studies. Second, we explored the causal association between PAI-1 and CHD using a Mendelian randomization approach using summary statistics from large genome-wide association studies. Finally, we explored the causal effect of PAI-1 on cardiovascular risk factors including metabolic and subclinical atherosclerosis measures. In the systematic meta-analysis, the highest quantile of blood PAI-1 level was associated with higher CHD risk comparing with the lowest quantile (odds ratio=2.17; 95% CI: 1.53, 3.07) in an age- and sex-adjusted model. The effect size was reduced in studies using a multivariable-adjusted model (odds ratio=1.46; 95% CI: 1.13, 1.88). The Mendelian randomization analyses suggested a causal effect of increased PAI-1 level on CHD risk (odds ratio=1.22 per unit increase of log-transformed PAI-1; 95% CI: 1.01, 1.47). In addition, we also detected a causal effect of PAI-1 on elevating blood glucose and high-density lipoprotein cholesterol. Conclusions--Our study indicates a causal effect of elevated PAI-1 level on CHD risk, which may be mediated by glucose dysfunction

New genetic loci link adipose and insulin biology to body fat distribution.

Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our understanding of the genetic basis of body fat distribution and its molecular links to cardiometabolic traits, here we conduct genome-wide association meta-analyses of traits related to waist and hip circumferences in up to 224,459 individuals. We identify 49 loci (33 new) associated with waist-to-hip ratio adjusted for body mass index (BMI), and an additional 19 loci newly associated with related waist and hip circumference measures (P < 5 × 10(-8)). In total, 20 of the 49 waist-to-hip ratio adjusted for BMI loci show significant sexual dimorphism, 19 of which display a stronger effect in women. The identified loci were enriched for genes expressed in adipose tissue and for putative regulatory elements in adipocytes. Pathway analyses implicated adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution, providing insight into potential pathophysiological mechanisms