Using Extension Phosphorus Uptake Research to Improve Idaho\u27s Nutrient Management Planning Program

Irrigated silage corn is the main crop used for P removal in southern Idaho; however, little is known about the actual amounts of P removed under southern Idaho growing conditions. The study surveyed P removal by irrigated silage corn in primarily manured southern Idaho fields and wide-ranging soil test P. Whole plant corn tissue P concentrations ranged from 0.116 to 0.307% total P and averaged 0.208%—lower than Natural Resources Conservation Service (NRCS) estimates used prior to 2007 (0.26%P) but higher than estimates used since 2007 (0.185%). The study was used to update the OnePlan.org© Nutrient Management planning online program

Design of flexible ultrahigh-Q microcavities in diamond-based photonic crystal slabs

We design extremely flexible ultrahigh-Q diamond-based double-heterostructure photonic crystal slab cavities by modifying the refractive index of the diamond. The refractive index changes needed for ultrahigh-Q cavities with $Q ~ 10^7$, are well within what can be achieved ($\Delta n \sim 0.02$). The cavity modes have relatively small volumes $V<2 (\lambda /n)^3$, making them ideal for cavity quantum electro-dynamic applications. Importantly for realistic fabrication, our design is flexible because the range of parameters, cavity length and the index changes, that enables an ultrahigh-Q is quite broad. Furthermore as the index modification is post-processed, an efficient technique to generate cavities around defect centres is achievable, improving prospects for defect-tolerant quantum architectures.Comment: 9 pages, 4 figures (1 in colour

Range-Wide Declines of Northern Spotted Owl Populations in the Pacific Northwest: A Meta-Analysis

The northern spotted owl (Strix occidentalis caurina) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls (Strix varia), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls\u27 geographic range to analyze demographic traits, rates of population change, and occupancy parameters for spotted owl territories. We found that northern spotted owl populations experienced significant declines of 6–9% annually on 6 study areas and 2–5% annually on 5 other study areas. Annual declines translated to ≤35% of the populations remaining on 7 study areas since 1995. Barred owl presence on spotted owl territories was the primary factor negatively affecting apparent survival, recruitment, and ultimately, rates of population change. Analysis of spotted and barred owl detections in an occupancy framework corroborated the capture-recapture analyses with barred owl presence increasing territorial extinction and decreasing territorial colonization of spotted owls. While landscape habitat components reduced the effect of barred owls on these rates of decline, they did not reverse the negative trend. Our analyses indicated that northern spotted owl populations potentially face extirpation if the negative effects of barred owls are not ameliorated while maintaining northern spotted owl habitat across their range

Seasonal variations of semidiurnal tidalperturbations in mesopause region temperature and zonal and meridional winds above Fort Collins, Colorado(40.6°N, 105.1°W)

On the basis of Colorado State University (CSU) Na lidar observations over full diurnal cycles from May 2002 to April 2006, a harmonic analysis was performed to extract semidiurnal perturbations in mesopause region temperature and zonal and meridional winds over Fort Collins, Colorado (40.6°N, 105.1°W). The observed monthly results are in good agreement with MF radar tidal climatology for Urbana, Illinois, and with predictions of the Hamburg Model of the Neutral and Ionized Atmosphere (HAMMONIA), sampled at the CSU Na lidar coordinates. The observed semidiurnal tidal period perturbation within the mesopause region is found to be dominated by propagating modes in winter and equinoctial months with a combined vertical wavelength varying from 50 km to almost 90 km and by a mode with evanescent behavior and longer vertical wavelength (100–150 km) in summer months, most likely due to dominance of (2, 2) and (2, 3) tidal (Hough) modes. The observed semidiurnal tidal amplitude shows strong seasonal variation, with a large amplitude during the winter months, with a higher growth rate above ∼85–90 km, and minimal amplitudes during the summer months. Maximum tidal amplitudes over 50 m/s for wind and 12 K for temperature occur during fall equinox. A detailed comparison with HAMMONIA predictions shows excellent agreement in semidiurnal phases. HAMMONIA-predicted semidiurnal amplitudes generally agree well with observations; however, HOMMONIA underestimates temperature amplitudes in some of the nonsummer months as well as zonal wind and meridional wind amplitudes in April and September but overestimates them in February. To reveal the effects of the atmospheric background on vertical propagation of tidal modes and their relative importance in the composite semidiurnal tide during different seasons, we use the lidar-observed monthly mean temperature and zonal wind from the same data set as well as HAMMONIA output to calculate the vertical wave number seasonal variations of the major tidal modes of the migrating semidiurnal tide. This leads to a qualitative understanding of the lidar-observed and HAMMONIA-predicted seasonal variation of the semidiurnal tidal perturbation

Using extension phosphorus uptake research to improve Idaho's nutrient management planning program.

Irrigated silage corn is the main crop used for phosphorus removal; however little is known about the actual amounts of phosphorus removed under southern Idaho growing conditions. The purpose of this study was to survey phosphorus removal by irrigated corn grown for silage in southern Idaho under variable soil test phosphorus concentrations. In this survey whole plant corn tissue phosphorus concentrations ranged from 0.116 to 0.307% total phosphorus and averaged 0.208%, which is lower than Natural Resources Conservation Services estimates used prior to 2007 (0.26% phosphorus) but higher than estimates used since 2007 (0.185%). The study was used by NRCS to update nutrient management planning software used by planners in Idaho

Range-wide sources of variation in reproductive rates of northern spotted owls

We conducted a range-wide investigation of the dynamics of site-level reproductive rate of northern spotted owls using survey data from 11 study areas across the subspecies geographic range collected during 1993–2018. Our analytical approach accounted for imperfect detection of owl pairs and misclassification of successful reproduction (i.e., at least one young fledged) and contributed further insights into northern spotted owl population ecology and dynamics. Both nondetection and state misclassification were important, especially because factors affecting these sources of error also affected focal ecological parameters. Annual probabilities of site occupancy were greatest at sites with successful reproduction in the previous year and lowest for sites not occupied by a pair in the previous year. Site-specific occupancy transition probabilities declined over time and were negatively affected by barred owl presence. Overall, the site-specific probability of successful reproduction showed substantial year-to-year fluctuations and was similar for occupied sites that did or did not experience successful reproduction the previous year. Site-specific probabilities for successful reproduction were very small for sites that were unoccupied the previous year. Barred owl presence negatively affected the probability of successful reproduction by northern spotted owls in Washington and California, as predicted, but the effect in Oregon was mixed. The proportions of sites occupied by northern spotted owl pairs showed steep, near-monotonic declines over the study period, with all study areas showing the lowest observed levels of occupancy to date. If trends continue it is likely that northern spotted owls will become extirpated throughout large portions of their range in the coming decades

The genomes of two key bumblebee species with primitive eusocial organization

Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats. Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits. Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation

A scientific synthesis of marine protected areas in the United States: status and recommendations

Marine protected areas (MPAs) are a key tool for achieving goals for biodiversity conservation and human well-being, including improving climate resilience and equitable access to nature. At a national level, they are central components in the U.S. commitment to conserve at least 30% of U.S. waters by 2030. By definition, the primary goal of an MPA is the long-term conservation of nature; however, not all MPAs provide the same ecological and social benefits. A U.S. system of MPAs that is equitable, well-managed, representative and connected, and includes areas at a level of protection that can deliver desired outcomes is best positioned to support national goals. We used a new MPA framework, The MPA Guide, to assess the level of protection and stage of establishment of the 50 largest U.S. MPAs, which make up 99.7% of the total U.S. MPA area (3.19 million km2). Over 96% of this area, including 99% of that which is fully or highly protected against extractive or destructive human activities, is in the central Pacific ocean. Total MPA area in other regions is sparse – only 1.9% of the U.S. ocean excluding the central Pacific is protected in any kind of MPA (120,976 km2). Over three quarters of the non-central Pacific MPA area is lightly or minimally protected against extractive or destructive human activities. These results highlight an urgent need to improve the quality, quantity, and representativeness of MPA protection in U.S. waters to bring benefits to human and marine communities. We identify and review the state of the science, including focal areas for achieving desired MPA outcomes and lessons learned from places where sound ecological and social design principles come together in MPAs that are set up to achieve national goals for equity, climate resilience, and biodiversity conservation. We recommend key opportunities for action specific to the U.S. context, including increasing funding, research, equity, and protection level for new and existing U.S. MPAs

Demonstration of surface electron rejection with interleaved germanium detectors for dark matter searches

The following article appeared in Applied Physics Letters 103.16 (2013): 164105 and may be found at http://scitation.aip.org/content/aip/journal/apl/100/26/10.1063/1.4729825The SuperCDMS experiment in the Soudan Underground Laboratory searches for dark matter with a 9-kg array of cryogenic germanium detectors. Symmetric sensors on opposite sides measure both charge and phonons from each particle interaction, providing excellent discrimination between electron and nuclear recoils, and between surface and interior events. Surface event rejection capabilities were tested with two 210 Pb sources producing ∼130 beta decays/hr. In ∼800 live hours, no events leaked into the 8–115 keV signal region, giving upper limit leakage fraction 1.7 × 10−5 at 90% C.L., corresponding to < 0.6 surface event background in the future 200-kg SuperCDMS SNOLAB experiment.This work is supported in part by the National Science Foundation (Grant Nos. AST-9978911, NSF-0847342, PHY-1102795,NSF-1151869, PHY-0542066, PHY-0503729, PHY-0503629, PHY-0503641, PHY-0504224, PHY-0705052,PHY-0801708, PHY-0801712, PHY-0802575, PHY-0847342, PHY-0855299, PHY-0855525, and PHY-1205898), by the Department of Energy (Contract Nos. DE-AC03-76SF00098, DE-FG02-92ER40701, DE-FG02-94ER40823,DE-FG03-90ER40569, DE-FG03-91ER40618, and DESC0004022),by NSERC Canada (Grant Nos. SAPIN 341314 and SAPPJ 386399), and by MULTIDARK CSD2009-00064 and FPA2012-34694. Fermilab is operated by Fermi Research Alliance, LLC under Contract No. De-AC02-07CH11359, while SLAC is operated under Contract No. DE-AC02-76SF00515 with the United States Department of Energy