Phylogeographic structure of common sage (Salvia officinalis L.) reveals microrefugia throughout the Balkans and colonizations of the Apennines

Studying the population-genetic and phylogeographic structures of a representative species of a particular geographical region can not only provide us with information regarding its evolutionary history, but also improve our understanding of the evolutionary processes underlying the patterns of species diversity in that area. By analysing eight highly polymorphic microsatellite loci and two chloroplast DNA regions, we have investigated the influence of Pleistocene climate fluctuations on the evolutionary history of Salvia officinalis L. (common sage). The populations with the highest genetic diversity were located in the central parts of the Balkan distribution range. A large group of closely related haplotypes was distributed throughout the Balkans and the central Apennines, while the private lineage occupied the southern Apennines. In addition, two highly differentiated lineages were scattered only over the Balkans. The results suggest that a single refugium of the studied species from the last glacial period was located in the central part of the range in the Balkans. Numerous microrefugia, probably spanning several glaciation cycles, were scattered across the Balkans, while colonisation of the Apennines from the Balkans occurred at least on two occasions

Genetic diversity in two variants of Orobanche gracilis Sm. [var. gracilis and var. deludens (Beck) A. Pujadas] (Orobanchaceae) from different regions of Spain

The pattern of genetic variation among populations of two Orobanche gracilis Sm. taxa (var. gracilis and var. deludens (Beck) A. Pujadas) from Northern and Southern Spain growing on different hosts was analysed using RAPD markers. The diversity analysis within populations revealed a higher level of diversity in the populations from the North when compared to the Southern ones. The results of principal co-ordinate analysis (PCoA) based on Dice distances among samples clearly established the separation of samples according to the taxonomical variety and the geographical origin of each population. The Southern populations of both var. gracilis and var. deludens were more differentiated among them than those of var. gracilis from the North. The analysis of molecular variance (AMOVA) indicated that the lowest level of population differentiation was found in O. gracilis var. gracilis from the North, whereas in the case of O. gracilis var. deludens from the South most of the genetic diversity was attributable to differences among populations. Possible explanations for the distribution of variation in these populations are discusse

Quantitative trait loci of frost tolerance and physiologically related trait in faba bean (Vicia faba L.)

Abstract In faba bean, field based winter-hardiness is a complex trait that is significantly correlated to frost tolerance. Frost tolerance could be used to indirectly select for faba bean winter-hardiness. The aim of this study was to identify putative QTL associated with frost tolerance and auxiliary traits and to quantify the efficiency of marker assisted selection. Thus, 101 recombinant inbred lines derived from the cross between two frost tolerant lines were tested for their hardened and unhardened frost tolerance and for their leaf fatty acid content in both treatments. Significant differences among the RIL were observed for all studied traits. For frost tolerance, five putative QTL were detected; three for unhardened frost tolerance that explained 40.7% (8.6% after crossvalidation, CV) of its genotypic variance and two for hardened frost tolerance that explained 21.8% (1.0% after CV). For fatty acid content, three QTL were detected for oleic acid content in unhardened leaves that explained 62.9% (40.6% after CV) of its genotypic variance. This fatty acid was significantly correlated with unhardened frost tolerance. The unbiased genotypic variance explained enabled to draw realistic prospects of MAS for frost tolerance. In this study, combined MAS was more efficient than classical phenotypic selection and was expected to be higher on larger populations at early generations. Moreover, favourable alleles inherited from the exotic line BPL 4628 could be introgressed to European winter-hardy beans for further improvement

Genetic diversity in two variants of Orobanche gracilis Sm. [var. gracilis and var. deludens (Beck) A. Pujadas] (Orobanchaceae) from different regions of Spain

The pattern of genetic variation among populations of two Orobanche gracilis Sm. taxa (var. gracilis and var. deludens (Beck) A. Pujadas) from Northern and Southern Spain growing on different hosts was analysed using RAPD markers. The diversity analysis within populations revealed a higher level of diversity in the populations from the North when compared to the Southern ones. The results of principal co-ordinate analysis (PCoA) based on Dice distances among samples clearly established the separation of samples according to the taxonomical variety and the geographical origin of each population. The Southern populations of both var. gracilis and var. deludens were more differentiated among them than those of var. gracilis from the North. The analysis of molecular variance (AMOVA) indicated that the lowest level of population differentiation was found in O. gracilis var. gracilis from the North, whereas in the case of O.gracilis var. deludens from the South most of the genetic diversity was attributable to differences among populations. Possible explanations for the distribution of variation in these populations are discussed

A SNP-based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.)

Faba bean (Vicia faba L.) is a globally important nitrogen-fixing legume, which is widely grown in a diverse range of environments. In this work, we mine and validate a set of 845 SNPs from the aligned transcriptomes of two contrasting inbred lines. Each V. faba SNP is assigned by BLAST analysis to a single Medicago orthologue. This set of syntenically anchored polymorphisms were then validated as individual KASP assays, classified according to their informativeness and performance on a panel of 37 inbred lines, and the best performing 757 markers used to genotype six mapping populations. The six resulting linkage maps were merged into a single consensus map on which 687 SNPs were placed on six linkage groups, each presumed to correspond to one of the six V. faba chromosomes. This sequence-based consensus map was used to explore synteny with the most closely related crop species, lentil and the most closely related fully sequenced genome, Medicago. Large tracts of uninterrupted colinearity were found between faba bean and Medicago, making it relatively straightforward to predict gene content and order in mapped genetic interval. As a demonstration of this, we mapped a flower colour gene to a 2-cM interval of Vf chromosome 2 which was highly colinear with Mt3. The obvious candidate gene from 78 gene models in the collinear Medicago chromosome segment was the previously characterized MtWD40-1 gene controlling anthocyanin production in Medicago and resequencing of the Vf orthologue showed a putative causative deletion of the entire 50 end of the gene.Peer reviewe

Dating Archaeological Strata in the Magna Mater Temple Using Solid-state Voltammetric Analysis of Leaded Bronze Coins

[EN] The application of solid state electrochemistry techniques for dating archaeological strata using lead-containing bronze coins is described. The proposed methodology was applied to samples coming from the Roman archaeological site of Magna Mater Temple (Rome, Italy) occurring in different strata dating back between the second half and the end of the 4(th) century A.D. and the 20(th) century. The voltammetric signatures of copper and lead corrosion products in contact with aqueous acetate buffer, as well as the catalytic effects produced on the hydrogen evolution reaction, were used for establishing the age of different strata and dating coins belonging to unknown age. Voltammetric data were consistent with a theoretical approximation based on a potential rate law for the corrosion process.Financial support from the MINECO Projects CTQ2014-53736-C3-1-P and CTQ2014-53736-C3-2-P which are supported with ERDF funds is gratefully acknowledged. PhD grants of the Department of Earth Sciences, Sapienza University of Rome, are gratefully thanked.Di Turo, F.; Montoya, N.; Piquero-Cilla, J.; De Vito, C.; Coletti, F.; Favero, G.; Domenech Carbo, MT.... (2018). Dating Archaeological Strata in the Magna Mater Temple Using Solid-state Voltammetric Analysis of Leaded Bronze Coins. Electroanalysis. 30(2):361-370. https://doi.org/10.1002/elan.201700724S36137030

Electrochemical discrimination of mints: The last Chinese emperors Kuang Hsu and Hsuan T'ung monetary unification

[EN] An electrochemical methodology for discriminating monetary emissions, a recurrent problem in much archaeological studies, is introduced. The method is based on the record of voltammetric signatures of cuprite and tenorite corrosion products in the patina using a minimally invasive nanosampling following the voltammetry of immobilized particles methodology. A model for the depth variation of voltammetric electrochemical parameters characterizing the composition of the corrosion patinas is presented. This model permits to rationalize electrochemical data and discriminate different monetary emissions. The application of this technique, corroborated by electrochemical impedance spectroscopy (EIS) and focusing ion beam-field emission scanning electron microscopy (FIB-FESEM-EDX), to a series of 10 cash copper coins produced around the Kuang Hsu and Hsuan Tung last Chinese emperors permits to discern different provincial mints and reveals that the monetary unification developed in this period was not uniform.Financial support from the Spanish MINECO Projects CTQ2014-53736-C3-1-P and CTQ2014-53736-C3-2-P which are also supported with ERDF funds. The Universita degli Studi di roma "La Sapienza" has granted a six-months research-scholarship (d.r.n. 965/2016 prot.n.0022041 del 31/03/2016) to the graduated Elena Montagna. The authors also wish to thank Dr. Jose Luis Moya Lopez and Mr. Manuel Planes Insausti (Microscopy Service of the Universitat Politecnica de Valencia) for technical supportDomenech-Carbo, A.; Domenech Carbo, MT.; Montagna, E.; Álvarez-Romero, C.; Lee, Y. (2017). Electrochemical discrimination of mints: The last Chinese emperors Kuang Hsu and Hsuan T'ung monetary unification. Talanta. 169:50-56. https://doi.org/10.1016/j.talanta.2017.03.025S505616

Electrochemical Characterization and Dating of Archaeological Leaded Bronze Objects Using the Voltammetry of Immobilized Particles

[EN] The application of solid state electrochemistry techniques for the characterization and dating of leaded bronze objects is described. Characteristic voltammetric signatures of copper and lead corrosion products were used as markers of more or less prolonged corrosion periods. The proposed methodology was applied to samples from the Roman archaeological sites of Valeria (Spain) and Gadara (Jordan), Roman and medieval sites in Xativa (Spain), and modern statuary exhibited outdoors, on the campus of the Universitat Politecnica of Valencia, Spain, covering a time interval between the fourth to second century bc and the 20th century ad. For such samples, the ratio between the signals for copper and lead corrosion products decreased monotonically with the corrosion time. This variation was modelled on the basis of thermochemical and kinetic considerations, the experimental data being consistent with a potential rate law for the corrosion process.Financial support from the MINECO Projects CTQ2014-53736-C3-1-P and CTQ2014-53736-C3-2-P, which are supported by ERDF funds, is gratefully acknowledged. We wish to thank the Fondo de Arte y Patrimonio of the Universitat Politecnica de Valencia; the Museu de Prehistoria of Valencia, and its director Helena Bonet and curator Jaime Vives-Ferrandiz; and the Museu Municipal of Xativa and its director Angel Velasco. We also wish to thank Dr Jose Luis Moya Lopez and Mr Manuel Planes Insausti (Microscopy Service of the Universitat Politecnica de Valencia) for technical support.Doménech Carbó, A.; Domenech Carbo, MT.; Redondo-Marugán, J.; Osete Cortina, L.; Vivancos Ramón, MV.; Martínez, B.; Martínez Lázaro, ID.... (2018). Electrochemical Characterization and Dating of Archaeological Leaded Bronze Objects Using the Voltammetry of Immobilized Particles. Archaeometry. 60(2):308-324. https://doi.org/10.1111/arcm.12308S30832460

Electrochemical Characterization of Coinage Techniques the 17(th) Century: The maravedis Case

This is the peer reviewed version of the following article: Doménech Carbó, A.; Domenech Carbo, MT.; Álvarez-Romero, C.; Montoya, N.; Pasies-Oviedo, T.; Buendía Ortuño, MDM. (2017). Electrochemical Characterization of Coinage Techniques the 17(th) Century: The maravedis Case. Electroanalysis. 29(9):2008-2018. doi:10.1002/elan.201700326, which has been published in final form at http://doi.org/10.1002/elan.201700326. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving."[EN] The voltammetry of immobilized particles (VIMP) methodology was applied to the discrimination of Spanish maravedis produced in 10 different mints between 1661 and 1664 using characteristic signatures for the reduction of cuprite and tenorite in the patina of the coins and catalytic effects on the hydrogen evolution reaction (HER). The variation of the apparent tenorite/cuprite ratio with depth was fitted to potential laws differing from one mint to another for A Coruna, Burgos, Cordoba, Cuenca, Granada, Madrid, Trujillo, Segovia, Sevilla and Valladolid coins. Electrochemical data permitted to detect the changes in the composition (with lowering of the silver content) and manufacturing technique (from hammer to mill) occurring in this historical period.Financial support from the MICIN Projects CTQ2014-53736-C3-1-P and CTQ2014-53736-C3-2-P, which are also supported with ERDF funds, is gratefully acknowledged. Thanks to the Museum of Prehistory of Valencia for facilitating the access to its collections.Domenech Carbo, A.; Domenech Carbo, MT.; Álvarez-Romero, C.; Montoya, N.; Pasies-Oviedo, T.; Buendía Ortuño, MDM. (2017). Electrochemical Characterization of Coinage Techniques the 17(th) Century: The maravedis Case. Electroanalysis. 29(9):2008-2018. https://doi.org/10.1002/elan.201700326S2008201829

Advances in faba bean genetics and genomics

Vicia faba L, is a globally important grain legume whose main centers of diversity are the Fertile Crescent and Mediterranean basin. Because of its small number (six) of exceptionally large and easily observed chromosomes it became a model species for plant cytogenetics the 70s and 80s. It is somewhat ironic therefore, that the emergence of more genomically tractable model plant species such as Arabidopsis and Medicago coincided with a marked decline in genome research on the formerly favored plant cytogenetic model. Thus, as ever higher density molecular marker coverage and dense genetic and even complete genome sequence maps of key crop and model species emerged through the 1990s and early 2000s, genetic and genome knowledge of Vicia faba lagged far behind other grain legumes such as soybean, common bean and pea. However, cheap sequencing technologies have stimulated the production of deep transcriptome coverage from several tissue types and numerous distinct cultivars in recent years. This has permitted the reconstruction of the faba bean meta-transcriptome and has fueled development of extensive sets of Simple Sequence Repeat and Single Nucleotide Polymorphism (SNP) markers. Genetics of faba bean stretches back to the 1930s, but it was not until 1993 that DNA markers were used to construct genetic maps. A series of Random Amplified Polymorphic DNA-based genetic studies mainly targeted at quantitative loci underlying resistance to a series of biotic and abiotic stresses were conducted during the 1990's and early 2000s. More recently, SNP-based genetic maps have permitted chromosome intervals of interest to be aligned to collinear segments of sequenced legume genomes such as the model legume Medicago truncatula, which in turn opens up the possibility for hypotheses on gene content, order and function to be translated from model to crop. Some examples of where knowledge of gene content and function have already been productively exploited are discussed. The bottleneck in associating genes and their functions has therefore moved from locating gene candidates to validating their function and the last part of this review covers mutagenesis and genetic transformation, two complementary routes to validating gene function and unlocking novel trait variation for the improvement of this important grain legume