192 research outputs found
Soil nitrogen concentration mediates the relationship between leguminous trees and neighbor diversity in tropical forests
Legumes provide an essential service to ecosystems by capturing nitrogen from the atmosphere and delivering it to the soil, where it may then be available to other plants. However, this facilitation by legumes has not been widely studied in global tropical forests. Demographic data from 11 large forest plots (16–60 ha) ranging from 5.25° S to 29.25° N latitude show that within forests, leguminous trees have a larger effect on neighbor diversity than non-legumes. Where soil nitrogen is high, most legume species have higher neighbor diversity than non-legumes. Where soil nitrogen is low, most legumes have lower neighbor diversity than non-legumes. No facilitation effect on neighbor basal area was observed in either high or low soil N conditions. The legume–soil nitrogen positive feedback that promotes tree diversity has both theoretical implications for understanding species coexistence in diverse forests, and practical implications for the utilization of legumes in forest restoration
The InterPro protein families database: the classification resource after 15 years.
The InterPro database (http://www.ebi.ac.uk/interpro/) is a freely available resource that can be used to classify sequences into protein families and to predict the presence of important domains and sites. Central to the InterPro database are predictive models, known as signatures, from a range of different protein family databases that have different biological focuses and use different methodological approaches to classify protein families and domains. InterPro integrates these signatures, capitalizing on the respective strengths of the individual databases, to produce a powerful protein classification resource. Here, we report on the status of InterPro as it enters its 15th year of operation, and give an overview of new developments with the database and its associated Web interfaces and software. In particular, the new domain architecture search tool is described and the process of mapping of Gene Ontology terms to InterPro is outlined. We also discuss the challenges faced by the resource given the explosive growth in sequence data in recent years. InterPro (version 48.0) contains 36 766 member database signatures integrated into 26 238 InterPro entries, an increase of over 3993 entries (5081 signatures), since 2012
Various correlations in a Heisenberg XXZ spin chain both in thermal equilibrium and under the intrinsic decoherence
In this paper we discuss various correlations measured by the concurrence
(C), classical correlation (CC), quantum discord (QD), and geometric measure of
discord (GMD) in a two-qubit Heisenberg XXZ spin chain in the presence of
external magnetic field and Dzyaloshinskii-Moriya (DM) anisotropic
antisymmetric interaction. Based on the analytically derived expressions for
the correlations for the cases of thermal equilibrium and the inclusion of
intrinsic decoherence, we discuss and compare the effects of various system
parameters on the correlations in different cases. The results show that the
anisotropy Jz is considerably crucial for the correlations in thermal
equilibrium at zero temperature limit but ineffective under the consideration
of the intrinsic decoherence, and these quantities decrease as temperature T
rises on the whole. Besides, J turned out to be constructive, but B be
detrimental in the manipulation and control of various quantities both in
thermal equilibrium and under the intrinsic decoherence which can be avoided by
tuning other system parameters, while D is constructive in thermal equilibrium,
but destructive in the case of intrinsic decoherence in general. In addition,
for the initial state , all
the correlations except the CC, exhibit a damping oscillation to a stable value
larger than zero following the time, while for the initial state , all the correlations monotonously
decrease, but CC still remains maximum. Moreover, there is not a definite
ordering of these quantities in thermal equilibrium, whereas there is a
descending order of the CC, C, GMD and QD under the intrinsic decoherence with
a nonnull B when the initial state is .Comment: 8 pages, 7 figure
Measurement of the Spectroscopy of Orbitally Excited B Mesons at LEP
We measure the masses, decay widths and relative production rate of orbitally
excited B mesons using 1.25 million hadronic Z decays recorded by the L3
detector. B-meson candidates are inclusively reconstructed and combined with
charged pions produced at the primary event vertex. An excess of events above
the expected background in the B\pi mass spectrum in the region 5.6-5.8 GeV is
interpreted as resulting from the decay B_u,d^** -> B^(*)\pi, where B_u,d^**
denotes a mixture of l=1 B-meson states containing a u or a d quark. A fit to
the mass spectrum yields the masses and decay widths of the B_1^* and B_2^*
spin states, as well as the branching fraction for the combination of l=1
states. In addition, evidence is presented for the existence of an excited
B-meson state or mixture of states in the region 5.9-6.0 GeV
Strange particle production in proton-proton collisions at TeV with ALICE at the LHC
The production of mesons containing strange quarks (K, ) and both
singly and doubly strange baryons (, Anti-, and
+Anti-) are measured at central rapidity in pp collisions at
= 0.9 TeV with the ALICE experiment at the LHC. The results are
obtained from the analysis of about 250 k minimum bias events recorded in 2009.
Measurements of yields (dN/dy) and transverse momentum spectra at central
rapidities for inelastic pp collisions are presented. For mesons, we report
yields () of 0.184 0.002 stat. 0.006 syst. for K and
0.021 0.004 stat. 0.003 syst. for . For baryons, we find
= 0.048 0.001 stat. 0.004 syst. for , 0.047
0.002 stat. 0.005 syst. for Anti- and 0.0101 0.0020 stat.
0.0009 syst. for +Anti-. The results are also compared with
predictions for identified particle spectra from QCD-inspired models and
provide a baseline for comparisons with both future pp measurements at higher
energies and heavy-ion collisions.Comment: 33 pages, 21 captioned figures, 10 tables, authors from page 28,
published version, figures at
http://aliceinfo.cern.ch/ArtSubmission/node/387
Two-pion Bose-Einstein correlations in central Pb-Pb collisions at = 2.76 TeV
The first measurement of two-pion Bose-Einstein correlations in central Pb-Pb
collisions at TeV at the Large Hadron Collider is
presented. We observe a growing trend with energy now not only for the
longitudinal and the outward but also for the sideward pion source radius. The
pion homogeneity volume and the decoupling time are significantly larger than
those measured at RHIC.Comment: 17 pages, 5 captioned figures, 1 table, authors from page 12,
published version, figures at
http://aliceinfo.cern.ch/ArtSubmission/node/388
Suppression of charged particle production at large transverse momentum in central Pb-Pb collisions at TeV
Inclusive transverse momentum spectra of primary charged particles in Pb-Pb
collisions at = 2.76 TeV have been measured by the ALICE
Collaboration at the LHC. The data are presented for central and peripheral
collisions, corresponding to 0-5% and 70-80% of the hadronic Pb-Pb cross
section. The measured charged particle spectra in and GeV/ are compared to the expectation in pp collisions at the same
, scaled by the number of underlying nucleon-nucleon
collisions. The comparison is expressed in terms of the nuclear modification
factor . The result indicates only weak medium effects ( 0.7) in peripheral collisions. In central collisions,
reaches a minimum of about 0.14 at -7GeV/ and increases
significantly at larger . The measured suppression of high- particles is stronger than that observed at lower collision energies,
indicating that a very dense medium is formed in central Pb-Pb collisions at
the LHC.Comment: 15 pages, 5 captioned figures, 3 tables, authors from page 10,
published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/98
Particle-yield modification in jet-like azimuthal di-hadron correlations in Pb-Pb collisions at = 2.76 TeV
The yield of charged particles associated with high- trigger
particles ( GeV/) is measured with the ALICE detector in
Pb-Pb collisions at = 2.76 TeV relative to proton-proton
collisions at the same energy. The conditional per-trigger yields are extracted
from the narrow jet-like correlation peaks in azimuthal di-hadron correlations.
In the 5% most central collisions, we observe that the yield of associated
charged particles with transverse momenta GeV/ on the
away-side drops to about 60% of that observed in pp collisions, while on the
near-side a moderate enhancement of 20-30% is found.Comment: 15 pages, 2 captioned figures, 1 table, authors from page 10,
published version, figures at
http://aliceinfo.cern.ch/ArtSubmission/node/350
Galaxy Clusters Associated with Short GRBs. II. Predictions for the Rate of Short GRBs in Field and Cluster Early-Type Galaxies
We determine the relative rates of short GRBs in cluster and field early-type
galaxies as a function of the age probability distribution of their
progenitors, P(\tau) \propto \tau^n. This analysis takes advantage of the
difference in the growth of stellar mass in clusters and in the field, which
arises from the combined effects of the galaxy stellar mass function, the
early-type fraction, and the dependence of star formation history on mass and
environment. This approach complements the use of the early- to late-type host
galaxy ratio, with the added benefit that the star formation histories of
early-type galaxies are simpler than those of late-type galaxies, and any
systematic differences between progenitors in early- and late-type galaxies are
removed. We find that the ratio varies from R(cluster)/R(field) ~ 0.5 for n =
-2 to ~ 3 for n = 2. Current observations indicate a ratio of about 2,
corresponding to n ~ 0 - 1. This is similar to the value inferred from the
ratio of short GRBs in early- and late-type hosts, but it differs from the
value of n ~ -1 for NS binaries in the Milky Way. We stress that this general
approach can be easily modified with improved knowledge of the effects of
environment and mass on the build-up of stellar mass, as well as the effect of
globular clusters on the short GRB rate. It can also be used to assess the age
distribution of Type Ia supernova progenitors.Comment: ApJ accepted versio
Production of pions, kaons and protons in pp collisions at GeV with ALICE at the LHC
The production of , , , , p, and pbar at mid-rapidity
has been measured in proton-proton collisions at GeV with the
ALICE detector. Particle identification is performed using the specific energy
loss in the inner tracking silicon detector and the time projection chamber. In
addition, time-of-flight information is used to identify hadrons at higher
momenta. Finally, the distinctive kink topology of the weak decay of charged
kaons is used for an alternative measurement of the kaon transverse momentum
() spectra. Since these various particle identification tools give
the best separation capabilities over different momentum ranges, the results
are combined to extract spectra from = 100 MeV/ to 2.5 GeV/.
The measured spectra are further compared with QCD-inspired models which yield
a poor description. The total yields and the mean are compared with
previous measurements, and the trends as a function of collision energy are
discussed.Comment: 24 pages, 18 captioned figures, 5 tables, published version, figures
at http://aliceinfo.cern.ch/ArtSubmission/node/388
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