Doctor of Philosophy

dissertationThis dissertation begins with an overview of skilled performance and how hierarchical control theory (HCT) has been successful in explaining skilled performance. Next, two novel premises of HCT are generated that provide evidence for distinct, hierarchical control systems (outer and inner loops). These control systems have unique properties and lead to very different predictions when applied to complex skills. By manipulating primary task predictability and secondary task workload of a complex skill, these properties can be dissociated. This is followed by an application of HCT to driving and driver distraction. I discuss how secondary task cognitive workload affects driving performance and how previous research has not explained paradoxical patterns of driving performance (i.e., lane maintenance). Then two premises of HCT are generated and used to make predictions about lane maintenance. Next, another influential theory of skilled performance (ACT-R) is discussed, and this theory is contrasted with HCT in terms of predictions regarding lane maintenance. Two experiments are designed to test HCT and differentiate it from ACT-R. The results support the predictions of HCT and suggest that ACT-R is somewhat limited in its ability to fully explain lane maintenance. HCT provides a framework for future driving research as well as future research on a variety of complex skills

Evolutionary history underlies plant physiological responses to global change since the last glacial maximum

This is the author's accepted manuscript, also available here, http//dx.doi.org/10.1111/ele.12271.Assessing family- and species-level variation in physiological responses to global change across geologic time is critical for understanding factors that underlie changes in species distributions and community composition. Here, we used stable carbon isotopes, leaf nitrogen content and stomatal measurements to assess changes in leaf-level physiology in a mixed conifer community that underwent significant changes in composition since the last glacial maximum (LGM) (21 kyr BP). Our results indicate that most plant taxa decreased stomatal conductance and/or maximum photosynthetic capacity in response to changing conditions since the LGM. However, plant families and species differed in the timing and magnitude of these physiological responses, and responses were more similar within families than within co-occurring species assemblages. This suggests that adaptation at the level of leaf physiology may not be the main determinant of shifts in community composition, and that plant evolutionary history may drive physiological adaptation to global change over recent geologic time

Topological branes, p-algebras and generalized Nahm equations

Inspired by the recent advances in multiple M2-brane theory, we consider the generalizations of Nahm equations for arbitrary p-algebras. We construct the topological p-algebra quantum mechanics associated to them and we show that this can be obtained as a truncation of the topological p-brane theory previously studied by the authors. The resulting topological p-algebra quantum mechanics is discussed in detail and the relation with the M2-M5 system is pointed out in the p=3 case, providing a geometrical argument for the emergence of the 3-algebra structure in the Bagger-Lambert-Gustavsson theoryComment: 20 page

Lipoxygenase-induced autoxidative degradation of terrestrial particulate organic matter in estuaries: A widespread process enhanced at high and low latitude

International audienceThere exists a substantial amount of research on abiotic (e.g. photochemical) degradation pertaining to organic matter (OM) in the marine realm. While recent research has shown its importance in the degradation of terrestrial particulate OM (TPOM), the mechanisms involved in the induction of autoxidation in estuaries remain unclear. In this study, we propose for the first time the involvement of lipoxygenase (LOX) activity in the induction of autoxidation in mixed waters. The observation of unusual profiles of palmitoleic acid oxidation products and the presence of jasmonic acid in suspended particulate matter (SPM) collected close to the Rhône River, as well as in samples from the Mackenzie and Amazon rivers, is attributed to strong LOX activity. We show the role played by salinity in the induction of this LOX activity and provide an explanation for the differences in estuarine autoxidation level. At high latitude, lower temperatures and irradiance favor photooxidative damage to higher plant debris and, consequently, hydroperoxide production. High hydroperoxide content strongly contributes to LOX activation in mixed waters. The high resulting LOX activity enhances alkoxyl radical production and thus autoxidation. On the contrary, at low latitude, photooxidative effects are limited, and riverine autoxidation is favored. The higher hydroperoxide content of TPOM may, as a consequence, thereby also contribute to a high level of LOX activity and autoxidation in estuaries. In temperate zones, land and riverine photooxidative and autoxidative damage is limited, unlike estuaries where we observed significant LOX-induced and autox-idative damage.

Increasing atmospheric [CO2] from glacial through future levels affects drought tolerance via impacts on leaves, xylem and their integrated function

This is the peer reviewed version of the following article: Medeiros, J. S. and Ward, J. K. (2013), Increasing atmospheric [CO2] from glacial to future concentrations affects drought tolerance via impacts on leaves, xylem and their integrated function. New Phytol, 199: 738–748. doi:10.1111/nph.12318, which has been published in final form at http://doi.org/10.1111/nph.12318. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving.Changes in atmospheric carbon dioxide concentration ([CO2]) affect plant carbon/water trade-offs, with implications for drought tolerance. Leaf-level studies often indicate that drought tolerance may increase with rising [CO2], but integrated leaf and xylem responses are not well understood in this respect. In addition, the influence of low [CO2] of the last glacial period on drought tolerance and xylem properties is not well understood. We investigated the interactive effects of a broad range of [CO2] and plant water potentials on leaf function, xylem structure and function and the integration of leaf and xylem function in Phaseolus vulgaris. Elevated [CO2] decreased vessel implosion strength, reduced conduit specific hydraulic conductance, and compromised leaf specific xylem hydraulic conductance under moderate drought. By contrast, at glacial [CO2], transpiration was maintained under moderate drought via greater conduit specific and leaf specific hydraulic conductance in association with increased vessel implosion strength. Our study involving the integration of leaf and xylem responses suggests that increasing [CO2] does not improve drought tolerance. We show that under glacial conditions changes in leaf and xylem properties could increase drought tolerance, while under future conditions greater productivity may only occur when higher water use can be accommodated

Performance of a North American Field Population and a Laboratory Colony of the Potato Tuberworm, Phthorimaea operculella, on Foliage of Resistant and Susceptible Potato Clones

Foliar resistance of two potato clones was tested against a Columbia Basin field population (CBFP) and a Colorado laboratory colony (COLC) of the potato tuberworm, Phthorimaea operculella (Zeller) (Lepidoptera: Gelechiidae). The first clone was a cross of a cultivated potato, Solanum tuberosum L. (Solanales: Solanaceae), and a wild potato, Solanum berthaultii Hawkes (Q 174-2); the second clone was cv. Allegany, S. tuberosum L.. In no-choice assays, defoliation by P. operculella larvae of COLC and CBFP did not differ on Allegany and Q174-2. Larval weight and production of COLC and CBFP colonies were similarly reduced on Q174-2 compared to cv. Allegany, although larval weights and production of the CBFP population were slightly less affected by the host. Larval production by the COLC on Allegany was greater than that on Q174-2, while that of the CBFP on Allegany and Q174-2 did not differ. However, production of P. operculella larvae by the CBFP on Q174-2 during no-choice assays was greater than that in choice tests, indicating reduced host preference. Most of the larvae recovered from either host were fourth instars, followed by third instars. Although the levels of resistance expressed by Q174-2 potato clone to the two P. operculella populations differed in magnitude, nearly all of P. operculella performance criteria measured in this study were adversely affected by Q174-2 foliage compared to the commercial potato cultivar, cv. Allegany

Identifying cognitive distraction using steering wheel reversal rates

The influence of driver distraction on driving performance is not yet well understood, but it can have detrimental effects on road safety. In this study, we examined the effects of visual and non-visual distractions during driving, using a high-fidelity driving simulator. The visual task was presented either at an offset angle on an in-vehicle screen, or on the back of a moving lead vehicle. Similar to results from previous studies in this area, non-visual (cognitive) distraction resulted in improved lane keeping performance and increased gaze concentration towards the centre of the road, compared to baseline driving, and further examination of the steering control metrics indicated an increase in steering wheel reversal rates, steering wheel acceleration, and steering entropy. We show, for the first time, that when the visual task is presented centrally, drivers’ lane deviation reduces (similar to non-visual distraction), whilst measures of steering control, overall, indicated more steering activity, compared to baseline. When using a visual task that required the diversion of gaze to an in-vehicle display, but without a manual element, lane keeping performance was similar to baseline driving. Steering wheel reversal rates were found to adequately tease apart the effects of non-visual distraction (increase of 0.5 degree reversals) and visual distraction with offset gaze direction (increase of 2.5 degree reversals). These findings are discussed in terms of steering control during different types of in-vehicle distraction, and the possible role of manual interference by distracting secondary tasks

Combined 1H-Detected solid-state NMR spectroscopy and electron cryotomography to study membrane proteins across resolutions in native environments

Membrane proteins remain challenging targets for structural biology, despite much effort, as their native environment is heterogeneous and complex. Most methods rely on detergents to extract membrane proteins from their native environment, but this removal can significantly alter the structure and function of these proteins. Here, we overcome these challenges with a hybrid method to study membrane proteins in their native membranes, combining high-resolution solid-state nuclear magnetic resonance spectroscopy and electron cryotomography using the same sample. Our method allows the structure and function of membrane proteins to be studied in their native environments, across different spatial and temporal resolutions, and the combination is more powerful than each technique individually. We use the method to demonstrate that the bacterial membrane protein YidC adopts a different conformation in native membranes and that substrate binding to YidC in these native membranes differs from purified and reconstituted system

Early stages of leaf decomposition are mediated by aquatic fungi in the hyporheic zone of woodland streams

1. Leaf litter constitutes the major source of organic matter and energy in woodland stream ecosystems. A substantial part of leaf litter entering running waters may be buried in the streambed as a consequence of flooding and sediment movement. While decomposition of leaf litter in surface waters is relatively well understood, its fate when incorporated into river sediments, as well as the involvement of invertebrate and fungal decomposers in such conditions, remain poorly documented. 2. We tested experimentally the hypotheses that the small interstices of the sediment restrict the access of the largest shredders to buried organic matter without compromising that of aquatic hyphomycetes and that fungal decomposers in the hyporheic zone, at least partly, compensate for the role of invertebrate detritivores in the benthic zone. 3. Alder leaves were introduced in a stream either buried in the sediment (hyporheic), buried after 2 weeks of exposure at the sediment surface (benthic-hyporheic), or exposed at the sediment surface for the entire experiment (benthic). Leaf decomposition was markedly faster on the streambed surface than in the two other treatments (2.1- and 2.8-fold faster than in the benthic-hyporheic and hyporheic treatments, respectively). 4. Fungal assemblages were generally less diverse in the hyporheic habitat with a few species tending to be relatively favoured by such conditions. Both fungal biomass and sporulation rates were reduced in the hyporheic treatment, with the leaves subject to the benthic-hyporheic treatment exhibiting an intermediate pattern. The initial 2-week stage in the benthic habitat shaped the fungal assemblages, even for leaves later subjected to the hyporheic conditions. 5. The abundance and biomass of shredders drastically decreased with burial, except for Leuctra spp., which increased and was by far the most common leaf-associated taxon in the hyporheic zone. Leuctra spp. was one of the rare shredder taxa displaying morphological characteristics that increased performance within the limited space of sediment interstices. 6. The carbon budgets indicated that the relative contributions of the two main decomposers, shredders and fungi, varied considerably depending on the location within the streambed. While the shredder biomass represented almost 50% of the initial carbon transformed after 80 days in the benthic treatment, its contribution was <0.3% in the hyporheic one and 2.0% in the combined benthic-hyporheic treatment. In contrast, mycelial and conidial production in the permanently hyporheic environment accounted for 12% of leaf mass loss, i.e. 2–3 times more than in the two other conditions. These results suggest that the role of fungi is particularly important in the hyporheic zone. 7. Our findings indicate that burial within the substratum reduces the litter breakdown rate by limiting the access of both invertebrate and fungal decomposers to leaves. As a consequence, the hyporheic zone may be an important region of organic matter storage in woodland streams and serve as a fungal inoculum reservoir contributing to further dispersal. Through the temporary retention of litter by burial, the hyporheic zone must play a significant role in the carbon metabolism and overall functioning of headwater stream ecosystems