Energetic and Environmental Constraints on the Community Structure of Benthic Microbial Mats in Lake Fryxell, Antarctica.

Ecological communities are regulated by the flow of energy through environments. Energy flow is typically limited by access to photosynthetically active radiation (PAR) and oxygen concentration (O2). The microbial mats growing on the bottom of Lake Fryxell, Antarctica, have well-defined environmental gradients in PAR and (O2). We analyzed the metagenomes of layers from these microbial mats to test the extent to which access to oxygen and light controls community structure. We found variation in the diversity and relative abundances of Archaea, Bacteria and Eukaryotes across three (O2) and PAR conditions: high (O2) and maximum PAR, variable (O2) with lower maximum PAR, and low (O2) and maximum PAR. We found distinct communities structured by the optimization of energy use on a millimeter-scale across these conditions. In mat layers where (O2) was saturated, PAR structured the community. In contrast, (O2) positively correlated with diversity and affected the distribution of dominant populations across the three habitats, suggesting that meter-scale diversity is structured by energy availability. Microbial communities changed across covarying gradients of PAR and (O2). The comprehensive metagenomic analysis suggests that the benthic microbial communities in Lake Fryxell are structured by energy flow across both meter- and millimeter-scales

Meta-analysis of Cryogenian through modern quartz microtextures reveals sediment transport histories

Quantitative scanning electron microscopy (SEM) quartz microtextural analysis can reveal the transport histories of modern and ancient sediments. However, because workers identify and count microtextures differently, it is difficult to directly compare quantitative microtextural data analyzed by different workers. As a result, the defining microtextures of certain transport modes and their probabilities of occurrence are not well constrained. We used principal component analysis (PCA) to directly compare modern and ancient aeolian, fluvial, and glacial samples from the literature with 9 new samples from active aeolian and glacial environments. Our results demonstrate that PCA can group microtextural samples by transport mode and differentiate between aeolian and fluvial/glacial transport modes across studies. The PCA ordination indicates that aeolian samples are distinct from fluvial and glacial samples, which are in turn difficult to disambiguate from each other. Ancient and modern sediments are also shown to have quantitatively similar microtextural relationships. Therefore, PCA may be a useful tool to constrain the ambiguous transport histories of some ancient sediment grains. As a case study, we analyzed two samples with ambiguous transport histories from the Cryogenian Bråvika Member (Svalbard). Integrating PCA with field observations, we find evidence that the Bråvika Member facies investigated here includes aeolian deposition and may be analogous to syn-glacial Marinoan aeolian units including the Bakoye Formation in Mali and the Whyalla Sandstone in South Australia

A 600-Million-Year Carbonate Clumped-Isotope Record from the Sultanate of Oman

Carbonate clumped-isotope thermometry is a promising technique that has the potential to help decode the significance of the variability of both physical and geochemical compositions of ancient carbonate rocks. This study utilizes a 600-million-year record of marine carbonate rocks from the subsurface and surface of the Sultanate of Oman to explore how burial and exhumation affected the carbonate clumped-isotope thermometer. Samples span 6 km of burial depth, and include calcite and dolomite mineralogies and a range of carbonate rock textures. We find evidence for two broad patterns in the physical and geochemical behavior of carbonate rocks during burial. The first group of carbonates yield water δ^(18)O_(VSMOW) compositions slightly enriched or equal to an expected “ice-free” seawater composition of –1.2‰ and display good to fair textural preservation suggesting that cementation and lithification occurred within tens of meters of the sediment–water interface. Temperatures from the second group sit on the present-day geotherm, yield highly enriched water δ^(18)O_(VSMOW) compositions, and display fair to poor textural preservation. We find no evidence for solid-state reordering in paired analyses of calcites and dolomites. Our results contribute to a growing body of work that indicates that the seawater δ^(18)O_(VSMOW) composition has not changed significantly over 600 Myr and was not –6‰ in the Ediacaran

A 600-Million-Year Carbonate Clumped-Isotope Record from the Sultanate of Oman

Carbonate clumped-isotope thermometry is a promising technique that has the potential to help decode the significance of the variability of both physical and geochemical compositions of ancient carbonate rocks. This study utilizes a 600-million-year record of marine carbonate rocks from the subsurface and surface of the Sultanate of Oman to explore how burial and exhumation affected the carbonate clumped-isotope thermometer. Samples span 6 km of burial depth, and include calcite and dolomite mineralogies and a range of carbonate rock textures. We find evidence for two broad patterns in the physical and geochemical behavior of carbonate rocks during burial. The first group of carbonates yield water δ^(18)O_(VSMOW) compositions slightly enriched or equal to an expected “ice-free” seawater composition of –1.2‰ and display good to fair textural preservation suggesting that cementation and lithification occurred within tens of meters of the sediment–water interface. Temperatures from the second group sit on the present-day geotherm, yield highly enriched water δ^(18)O_(VSMOW) compositions, and display fair to poor textural preservation. We find no evidence for solid-state reordering in paired analyses of calcites and dolomites. Our results contribute to a growing body of work that indicates that the seawater δ^(18)O_(VSMOW) composition has not changed significantly over 600 Myr and was not –6‰ in the Ediacaran

Multitrait analysis of glaucoma identifies new risk loci and enables polygenic prediction of disease susceptibility and progression

Glaucoma, a disease characterized by progressive optic nerve degeneration, can be prevented through timely diagnosis and treatment. We characterize optic nerve photographs of 67,040 UK Biobank participants and use a multitrait genetic model to identify risk loci for glaucoma. A glaucoma polygenic risk score (PRS) enables effective risk stratification in unselected glaucoma cases and modifies penetrance of the MYOC variant encoding p.Gln368Ter, the most common glaucoma-associated myocilin variant. In the unselected glaucoma population, individuals in the top PRS decile reach an absolute risk for glaucoma 10 years earlier than the bottom decile and are at 15-fold increased risk of developing advanced glaucoma (top 10% versus remaining 90%, odds ratio = 4.20). The PRS predicts glaucoma progression in prospectively monitored, early manifest glaucoma cases (P = 0.004) and surgical intervention in advanced disease (P = 3.6 × 10). This glaucoma PRS will facilitate the development of a personalized approach for earlier treatment of high-risk individuals, with less intensive monitoring and treatment being possible for lower-risk groups

Broadband Multi-wavelength Properties of M87 during the 2017 Event Horizon Telescope Campaign

Abstract: In 2017, the Event Horizon Telescope (EHT) Collaboration succeeded in capturing the first direct image of the center of the M87 galaxy. The asymmetric ring morphology and size are consistent with theoretical expectations for a weakly accreting supermassive black hole of mass ∼6.5 × 109 M ⊙. The EHTC also partnered with several international facilities in space and on the ground, to arrange an extensive, quasi-simultaneous multi-wavelength campaign. This Letter presents the results and analysis of this campaign, as well as the multi-wavelength data as a legacy data repository. We captured M87 in a historically low state, and the core flux dominates over HST-1 at high energies, making it possible to combine core flux constraints with the more spatially precise very long baseline interferometry data. We present the most complete simultaneous multi-wavelength spectrum of the active nucleus to date, and discuss the complexity and caveats of combining data from different spatial scales into one broadband spectrum. We apply two heuristic, isotropic leptonic single-zone models to provide insight into the basic source properties, but conclude that a structured jet is necessary to explain M87’s spectrum. We can exclude that the simultaneous γ-ray emission is produced via inverse Compton emission in the same region producing the EHT mm-band emission, and further conclude that the γ-rays can only be produced in the inner jets (inward of HST-1) if there are strongly particle-dominated regions. Direct synchrotron emission from accelerated protons and secondaries cannot yet be excluded

Harmful Elements in Estuarine and Coastal Systems

Estuaries and coastal zones are dynamic transitional systems which provide many economic and ecological benefits to humans, but also are an ideal habitat for other organisms as well. These areas are becoming contaminated by various anthropogenic activities due to a quick economic growth and urbanization. This chapter explores the sources, chemical speciation, sediment accumulation and removal mechanisms of the harmful elements in estuarine and coastal seawaters. It also describes the effects of toxic elements on aquatic flora and fauna. Finally, the toxic element pollution of the Venice Lagoon, a transitional water body located in the northeastern part of Italy, is discussed as a case study, by presenting the procedures adopted to measure the extent of the pollution, the impacts on organisms and the restoration activities

Distinct tooth regeneration systems deploy a conserved battery of genes.

BackgroundVertebrate teeth exhibit a wide range of regenerative systems. Many species, including most mammals, reptiles, and amphibians, form replacement teeth at a histologically distinct location called the successional dental lamina, while other species do not employ such a system. Notably, a 'lamina-less' tooth replacement condition is found in a paraphyletic array of ray-finned fishes, such as stickleback, trout, cod, medaka, and bichir. Furthermore, the position, renewal potential, and latency times appear to vary drastically across different vertebrate tooth regeneration systems. The progenitor cells underlying tooth regeneration thus present highly divergent arrangements and potentials. Given the spectrum of regeneration systems present in vertebrates, it is unclear if morphologically divergent tooth regeneration systems deploy an overlapping battery of genes in their naïve dental tissues.ResultsIn the present work, we aimed to determine whether or not tooth progenitor epithelia could be composed of a conserved cell type between vertebrate dentitions with divergent regeneration systems. To address this question, we compared the pharyngeal tooth regeneration processes in two ray-finned fishes: zebrafish (Danio rerio) and threespine stickleback (Gasterosteus aculeatus). These two teleost species diverged approximately 250 million years ago and demonstrate some stark differences in dental morphology and regeneration. Here, we find that the naïve successional dental lamina in zebrafish expresses a battery of nine genes (bmpr1aa, bmp6, cd34, gli1, igfbp5a, lgr4, lgr6, nfatc1, and pitx2), while active Wnt signaling and Lef1 expression occur during early morphogenesis stages of tooth development. We also find that, despite the absence of a histologically distinct successional dental lamina in stickleback tooth fields, the same battery of nine genes (Bmpr1a, Bmp6, CD34, Gli1, Igfbp5a, Lgr4, Lgr6, Nfatc1, and Pitx2) are expressed in the basalmost endodermal cell layer, which is the region most closely associated with replacement tooth germs. Like zebrafish, stickleback replacement tooth germs additionally express Lef1 and exhibit active Wnt signaling. Thus, two fish systems that either have an organized successional dental lamina (zebrafish) or lack a morphologically distinct successional dental lamina (sticklebacks) deploy similar genetic programs during tooth regeneration.ConclusionsWe propose that the expression domains described here delineate a highly conserved "successional dental epithelium" (SDE). Furthermore, a set of orthologous genes is known to mark hair follicle epithelial stem cells in mice, suggesting that regenerative systems in other epithelial appendages may utilize a related epithelial progenitor cell type, despite the highly derived nature of the resulting functional organs

A Decrease to Low Carbonate Clumped Isotope Temperatures in Cryogenian Strata

Preglacial and synglacial low-latitude carbonate sediments of the Elbobreen Formation, NE Svalbard, preserve facies changes associated with low-latitude glacial advance in Cryogenian “Snowball Earth” episodes (717–635 Ma). We present the first application of carbonate clumped (Δ47) isotope thermometry on synglacial Snowball Earth carbonates and combine results with sedimentologic and petrographic observations and stable isotope (δ13C and δ18O) geochemistry to assess Neoproterozoic environmental change. We find elevated calcite Δ47 temperatures, which likely reflect solid-state reordering during burial. Dolomites, however, record lower temperatures that vary with facies and stratigraphy. Preglacial dolomite Δ47 temperatures range from 48–77°C, with a reconstructed fluid δ18OVSMOW value of +0.6‰ in the coldest sample. Glacial diamictites and dolomicrites comprise (1) reworked detrital clasts similar to preglacial strata in stable isotope composition and petrographic textures and (2) autochthonous dolomicrite with more positive δ18O values than those of preglacial dolomites or cooccurring detrital clasts. Mean glacial autochthonous dolomicrite Δ47 temperatures are 26 ± 10°C (95% CL) cooler than preglacial strata, with four samples <25°C. All dolomite Δ47 temperatures reflect diagenesis associated with lithification, yet observed stratigraphic and textural Δ47 temperature differences indicate that this occurred early and only contributes to part of the preserved temperature signal. Alteration trends within populations are consistent with low water/rock ratio diagenesis or partial solid-state reordering; either possibility supports the likelihood of preserved δ18O trends. We postulate that the preserved temperature and δ18O differences between low-latitude preglacial Tonian and synglacial Cryogenian dolomites are an imperfect reflection of primary temperature change and ice sheet expansion

Distinct tooth regeneration systems deploy a conserved battery of genes.

BackgroundVertebrate teeth exhibit a wide range of regenerative systems. Many species, including most mammals, reptiles, and amphibians, form replacement teeth at a histologically distinct location called the successional dental lamina, while other species do not employ such a system. Notably, a 'lamina-less' tooth replacement condition is found in a paraphyletic array of ray-finned fishes, such as stickleback, trout, cod, medaka, and bichir. Furthermore, the position, renewal potential, and latency times appear to vary drastically across different vertebrate tooth regeneration systems. The progenitor cells underlying tooth regeneration thus present highly divergent arrangements and potentials. Given the spectrum of regeneration systems present in vertebrates, it is unclear if morphologically divergent tooth regeneration systems deploy an overlapping battery of genes in their naïve dental tissues.ResultsIn the present work, we aimed to determine whether or not tooth progenitor epithelia could be composed of a conserved cell type between vertebrate dentitions with divergent regeneration systems. To address this question, we compared the pharyngeal tooth regeneration processes in two ray-finned fishes: zebrafish (Danio rerio) and threespine stickleback (Gasterosteus aculeatus). These two teleost species diverged approximately 250 million years ago and demonstrate some stark differences in dental morphology and regeneration. Here, we find that the naïve successional dental lamina in zebrafish expresses a battery of nine genes (bmpr1aa, bmp6, cd34, gli1, igfbp5a, lgr4, lgr6, nfatc1, and pitx2), while active Wnt signaling and Lef1 expression occur during early morphogenesis stages of tooth development. We also find that, despite the absence of a histologically distinct successional dental lamina in stickleback tooth fields, the same battery of nine genes (Bmpr1a, Bmp6, CD34, Gli1, Igfbp5a, Lgr4, Lgr6, Nfatc1, and Pitx2) are expressed in the basalmost endodermal cell layer, which is the region most closely associated with replacement tooth germs. Like zebrafish, stickleback replacement tooth germs additionally express Lef1 and exhibit active Wnt signaling. Thus, two fish systems that either have an organized successional dental lamina (zebrafish) or lack a morphologically distinct successional dental lamina (sticklebacks) deploy similar genetic programs during tooth regeneration.ConclusionsWe propose that the expression domains described here delineate a highly conserved "successional dental epithelium" (SDE). Furthermore, a set of orthologous genes is known to mark hair follicle epithelial stem cells in mice, suggesting that regenerative systems in other epithelial appendages may utilize a related epithelial progenitor cell type, despite the highly derived nature of the resulting functional organs