Is our dynamical understanding of the circulation changes associated with the Antarctic ozone hole sensitive to the choice of reanalysis dataset?

This study quantifies differences among four widely used atmospheric reanalysis datasets (ERA5, JRA-55, MERRA-2, and CFSR) in their representation of the dynamical changes induced by springtime polar stratospheric ozone depletion in the Southern Hemisphere from 1980 to 2001. The intercomparison is undertaken as part of the SPARC (Stratosphere–troposphere Processes and their Role in Climate) Reanalysis Intercomparison Project (S-RIP). The reanalyses are generally in good agreement in their representation of the strengthening of the lower stratospheric polar vortex during the austral spring–summer season, associated with reduced radiative heating due to ozone loss, as well as the descent of anomalously strong westerly winds into the troposphere during summer and the subsequent poleward displacement and intensification of the polar front jet. Differences in the trends in zonal wind between the reanalyses are generally small compared to the mean trends. The exception is CFSR, which exhibits greater disagreement compared to the other three reanalysis datasets, with stronger westerly winds in the lower stratosphere in spring and a larger poleward displacement of the tropospheric westerly jet in summer. The dynamical changes associated with the ozone hole are examined by investigating the momentum budget and then the eddy heat and momentum fluxes in terms of planetary- and synoptic-scale Rossby wave contributions. The dynamical changes are consistently represented across the reanalyses and support our dynamical understanding of the response of the coupled stratosphere–troposphere system to the ozone hole. Although our results suggest a high degree of consistency across the four reanalysis datasets in the representation of these dynamical changes, there are larger differences in the wave forcing, residual circulation, and eddy propagation changes compared to the zonal wind trends. In particular, there is a noticeable disparity in these trends in CFSR compared to the other three reanalyses, while the best agreement is found between ERA5 and JRA-55. Greater uncertainty in the components of the momentum budget, as opposed to mean circulation, suggests that the zonal wind is better constrained by the assimilation of observations compared to the wave forcing, residual circulation, and eddy momentum and heat fluxes, which are more dependent on the model-based forecasts that can differ between reanalyses. Looking forward, however, these findings give us confidence that reanalysis datasets can be used to assess changes associated with the ongoing recovery of stratospheric ozone

Rotator Cuff Deficient Arthritis of the Glenohumeral Joint

Rotator cuff deficient arthritis of the glenohumeral joint, especially cuff tear arthropathy, has proved a challenging clinical entity for orthopaedic surgeons ever since Charles Neer originally detailed the problem in 1983. Understanding has improved regarding the pathophysiology and pathomechanics underlying cuff tear arthropathy. Surgical reconstruction options can lead to excellent outcomes for patients afflicted with these painful and functionally limited shoulders. Humeral hemiarthroplasty and reverse total shoulder arthroplasty have jumped to the forefront in the treatment of cuff tear arthropathy. As studies continue to look at the results of these procedures in cuff tear arthropathy, existing indications and treatment algorithms will be further refined. In this article the history and pathophysiology of cuff tear arthropathy are reviewed. Additionally, the clinical findings and results of surgical reconstruction are discussed

Fractal superconductivity near localization threshold

We develop a semi-quantitative theory of electron pairing and resulting superconductivity in bulk "poor conductors" in which Fermi energy $E_F$ is located in the region of localized states not so far from the Anderson mobility edge $E_c$. We review the existing theories and experimental data and argue that a large class of disordered films is described by this model. Our theoretical analysis is based on the analytical treatment of pairing correlations, described in the basis of the exact single-particle eigenstates of the 3D Anderson model, which we combine with numerical data on eigenfunction correlations. Fractal nature of critical wavefunction's correlations is shown to be crucial for the physics of these systems. We identify three distinct phases: 'critical' superconductive state formed at $E_F=E_c$, superconducting state with a strong pseudogap, realized due to pairing of weakly localized electrons and insulating state realized at $E_F$ still deeper inside localized band. The 'critical' superconducting phase is characterized by the enhancement of the transition temperature with respect to BCS result, by the inhomogeneous spatial distribution of superconductive order parameter and local density of states. The major new feature of the pseudo-gaped state is the presence of two independent energy scales: superconducting gap $\Delta$, that is due to many-body correlations and a new "pseudogap" energy scale $\Delta_P$ which characterizes typical binding energy of localized electron pairs and leads to the insulating behavior of the resistivity as a function of temperature above superconductive $T_c$. Two gap nature of the "pseudo-gaped superconductor" is shown to lead to a number of unusual physical properties.Comment: 110 pages, 39 figures. The revised version corrects a number of typos, adds references and discussion of recent result

Prion Switching in Response to Environmental Stress

Evolution depends on the manner in which genetic variation is translated into new phenotypes. There has been much debate about whether organisms might have specific mechanisms for “evolvability,” which would generate heritable phenotypic variation with adaptive value and could act to enhance the rate of evolution. Capacitor systems, which allow the accumulation of cryptic genetic variation and release it under stressful conditions, might provide such a mechanism. In yeast, the prion [PSI+] exposes a large array of previously hidden genetic variation, and the phenotypes it thereby produces are advantageous roughly 25% of the time. The notion that [PSI+] is a mechanism for evolvability would be strengthened if the frequency of its appearance increased with stress. That is, a system that mediates even the haphazard appearance of new phenotypes, which have a reasonable chance of adaptive value would be beneficial if it were deployed at times when the organism is not well adapted to its environment. In an unbiased, high-throughput, genome-wide screen for factors that modify the frequency of [PSI+] induction, signal transducers and stress response genes were particularly prominent. Furthermore, prion induction increased by as much as 60-fold when cells were exposed to various stressful conditions, such as oxidative stress (H2O2) or high salt concentrations. The severity of stress and the frequency of [PSI+] induction were highly correlated. These findings support the hypothesis that [PSI+] is a mechanism to increase survival in fluctuating environments and might function as a capacitor to promote evolvability

Probing BFKL Dynamics in the Dijet Cross Section at Large Rapidity Intervals in ppbar Collisions at sqrt{s}=1800 and 630 GeV

Inclusive dijet production at large pseudorapidity intervals (delta_eta) between the two jets has been suggested as a regime for observing BFKL dynamics. We have measured the dijet cross section for large delta_eta in ppbar collisions at sqrt{s}=1800 and 630 GeV using the DO detector. The partonic cross section increases strongly with the size of delta_eta. The observed growth is even stronger than expected on the basis of BFKL resummation in the leading logarithmic approximation. The growth of the partonic cross section can be accommodated with an effective BFKL intercept of a_{BFKL}(20GeV)=1.65+/-0.07.Comment: Published in Physical Review Letter

Multivariate searches for single top quark production with the D0 detector

We present a search for electroweak production of single top quarks in the s-channel (p-pbar -> t bbar + X) and t-channel (p-pbar -> tq bbar + X) modes. We have analyzed 230 pb^(-1) of data collected with the D0 detector at the Fermilab Tevatron collider at a center-of-mass energy of sqrt(s) = 1.96 TeV. Two separate analysis methods are used: neural networks and a cut-based analysis. No evidence for a single top quark signal is found. We set 95% confidence level upper limits on the production cross sections using Bayesian statistics, based on event counts and binned likelihoods formed from the neural network output. The limits from the neural network (cut-based) analysis are 6.4 pb (10.6 pb) in the s-channel and 5.0 pb (11.3 pb) in the t-channel.Comment: submitted to Phys. Rev. D, Fermilab preprint Fermilab-Pub-06/069-

Analysis of Microsatellite Variation in Drosophila melanogaster with Population-Scale Genome Sequencing

Genome sequencing technologies promise to revolutionize our understanding of genetics, evolution, and disease by making it feasible to survey a broad spectrum of sequence variation on a population scale. However, this potential can only be realized to the extent that methods for extracting and interpreting distinct forms of variation can be established. The error profiles and read length limitations of early versions of next-generation sequencing technologies rendered them ineffective for some sequence variant types, particularly microsatellites and other tandem repeats, and fostered the general misconception that such variants are inherently inaccessible to these platforms. At the same time, tandem repeats have emerged as important sources of functional variation. Tandem repeats are often located in and around genes, and frequent mutations in their lengths exert quantitative effects on gene function and phenotype, rapidly degrading linkage disequilibrium between markers and traits. Sensitive identification of these variants in large-scale next-gen sequencing efforts will enable more comprehensive association studies capable of revealing previously invisible associations. We present a population-scale analysis of microsatellite repeats using whole-genome data from 158 inbred isolates from the Drosophila Genetics Reference Panel, a collection of over 200 extensively phenotypically characterized isolates from a single natural population, to uncover processes underlying repeat mutation and to enable associations with behavioral, morphological, and life-history traits. Analysis of repeat variation from next-generation sequence data will also enhance studies of genome stability and neurodegenerative diseases

Reflecting on ICN2: Was it a game changer?

At the Second International Conference on Nutrition (ICN2), November 2014, 170 member states endorsed the Rome Declaration on Nutrition and a Framework for Action. The Rome Declaration committed to ending malnutrition in all its forms while the Framework for Action offered 60 voluntary actions to help achieve this. These documents and ICN2 itself had the potential to be a major step forward for public health nutrition, addressing issues associated with today's complex food system. This article reviews ICN2, its process, outputs and some of the gaps and weaknesses of the documents. ICN2's legacy can be interpreted in two ways-a missed opportunity or one of broad aspirations which have yet to translate into meaningful action. The paper considers whether ICN2 could have adopted a more ecological approach to diet and nutrition, linking health and sustainability. While this fits the evidence, it would require a strong commitment to coherence and food system change, almost certainly a firm stance on some food corporate power, and resolve to champion health at the heart of economic policy. This ambitious agenda would require specific multi-actor and multi-level action, together with metrics and mechanisms for accountability. Coherent government policies and actions to tackle all manifestations of inappropriate diet, and to reframe the economic forces which shape such diets are urgently required. To achieve this, the public health movement needs to work closely with civil society, yet ICN2 showed that there is some reluctance to energise that combination. As a result, ICN2 must be judged a missed opportunity, despite having useful aspirations

Climate Change, Coral Reef Ecosystems, and Management Options for Marine Protected Areas

Marine protected areas (MPAs) provide place-based management of marine ecosystems through various degrees and types of protective actions. Habitats such as coral reefs are especially susceptible to degradation resulting from climate change, as evidenced by mass bleaching events over the past two decades. Marine ecosystems are being altered by direct effects of climate change including ocean warming, ocean acidification, rising sea level, changing circulation patterns, increasing severity of storms, and changing freshwater influxes. As impacts of climate change strengthen they may exacerbate effects of existing stressors and require new or modified management approaches; MPA networks are generally accepted as an improvement over individual MPAs to address multiple threats to the marine environment. While MPA networks are considered a potentially effective management approach for conserving marine biodiversity, they should be established in conjunction with other management strategies, such as fisheries regulations and reductions of nutrients and other forms of land-based pollution. Information about interactions between climate change and more “traditional” stressors is limited. MPA managers are faced with high levels of uncertainty about likely outcomes of management actions because climate change impacts have strong interactions with existing stressors, such as land-based sources of pollution, overfishing and destructive fishing practices, invasive species, and diseases. Management options include ameliorating existing stressors, protecting potentially resilient areas, developing networks of MPAs, and integrating climate change into MPA planning, management, and evaluation