A eubacterial origin for the human tRNA nucleotidyltransferase?

tRNA CCA-termini are generated and maintained by tRNA nucleotidyltransferases. Together with poly(A) polymerases and other enzymes they belong to the nucleotidyltransferase superfamily. However, sequence alignments within this family do not allow to distinguish between CCA-adding enzymes and poly(A) polymerases. Furthermore, due to the lack of sequence information about animal CCA-adding enzymes, identification of corresponding animal genes was not possible so far. Therefore, we looked for the human homolog using the baker's yeast tRNA nucleotidyltransferase as a query sequence in a BLAST search. This revealed that the human gene transcript CGI-47, (\#AF151805) deposited in GenBank is likely to encode such an enzyme. To identify the nature of this protein, the cDNA of the transcript was cloned and the recombinant protein biochemically characterized, indicating that CGI-47 encodes a bona fide CCA-adding enzyme and not a poly(A) polymerase. This confirmed animal CCA-adding enzyme allowed us to identify putative homologs from other animals. Calculation of a neighbor-joining tree, using an alignment of several CCA-adding enzymes, revealed that the animal enzymes resemble more eubacterial ones than eukaryotic plant and fungal tRNA nucleotidyltransferases, suggesting that the animal nuclear cca genes might have been derived from the endosymbiotic progenitor of mitochondria and are therefore of eubacterial origin

A spatial interpretation of emerging superconductivity in lightly doped cuprates

The formation of domains comprising alternating 'hole rich' and 'hole poor' ladders recently observed by Scanning Tunneling Microscopy by Kohsaka et al., on lightly hole doped cuprates, is interpreted in terms of an attractive mechanism which favors the presence of doped holes on Cu sites located each on one side of an oxygen atom. This mechanism leads to a geometrical pattern of alternating hole-rich and hole-poor ladders with a periodicity equal to 4 times the lattice spacing in the CuO plane, as observed experimentally. To cite this article: G. Deutscher, P.-G. de Gennes, C. R. Physique 8 (2007).Comment: 4 pages, 3 figuer

Field Induced Nodal Order Parameter in the Tunneling Spectrum of YBa2_2Cu3_3O7−x_{7-x} Superconductor

We report planar tunneling measurements on thin films of YBa$_2$Cu$_3$O$_{7-x}$ at various doping levels under magnetic fields. By choosing a special setup configuration, we have probed a field induced energy scale that dominates in the vicinity of a node of the d-wave superconducting order parameter. We found a high doping sensitivity for this energy scale. At Optimum doping this energy scale is in agreement with an induced $id_{xy}$ order parameter. We found that it can be followed down to low fields at optimum doping, but not away from it.Comment: 9 pages, 8 figures, accepted for publication in Phys. Rev.

Proximity effect in granular superconductor-normal metal structures

We fabricated three-dimensional disordered Pb-Cu granular structures, with various metal compositions. The typical grain size of both metals is smaller than the superconductor and normal metal coherence lengths, thus satisfying the Cooper limit. The critical temperature of the samples was measured and compared with the critical temperature of bilayers. We show how the proximity effect theories, developed for bilayers, can be modified for random mixtures and we demonstrate that our experimental data fit well the de Gennes weak coupling limit theory in the Cooper limit. Our results indicate that, in granular structures, the Cooper limit can be satisfied over a wide range of concentrations.Comment: 15 pages, 4 figure

Quantum Effects and Broken Symmetries in Frustrated Antiferromagnets

We investigate the interplay between frustration and zero-point quantum fluctuations in the ground state of the triangular and $J_1{-}J_2$ Heisenberg antiferromagnets, using finite-size spin-wave theory, exact diagonalization, and quantum Monte Carlo methods. In the triangular Heisenberg antiferromagnet, by performing a systematic size-scaling analysis, we have obtained strong evidences for a gapless spectrum and a finite value of the thermodynamic order parameter, thus confirming the existence of long-range N\'eel order.The good agreement between the finite-size spin-wave results and the exact and quantum Monte Carlo data also supports the reliability of the spin-wave expansion to describe both the ground state and the low-energy spin excitations of the triangular Heisenberg antiferromagnet. In the $J_1{-}J_2$ Heisenberg model, our results indicate the opening of a finite gap in the thermodynamic excitation spectrum at $J_2/J_1 \simeq 0.4$, marking the melting of the antiferromagnetic N\'eel order and the onset of a non-magnetic ground state. In order to characterize the nature of the latter quantum-disordered phase we have computed the susceptibilities for the most important crystal symmetry breaking operators. In the ordered phase the effectiveness of the spin-wave theory in reproducing the low-energy excitation spectrum suggests that the uniform spin susceptibility of the model is very close to the linear spin-wave prediction.Comment: Review article, 44 pages, 18 figures. See also PRL 87, 097201 (2001