The Amplification and Characterization of Mycobacteriophages MyPhage and SolarFlare

Bacteriophages are viruses that infect and replicate in bacteria and are being researched for medical applications. MyPhage is a Mycobacteriophage discovered in Anaconda, Montana in May of 2009. The student found the phage in soil from a potted plant. The background of SolarFlare is unknown.https://digitalcommons.mtech.edu/urp_aug_2018/1003/thumbnail.jp

An Assessment of How Australian Fisheries Management Plans Account for Climate Change Impacts

For Australian fisheries to remain productive and sustainable (environmentally and commercially), there is a need to incorporate climate change considerations into management and planning, and to implement planned climate adaptation options. Here, we determine the extent to which Australian state fisheries management documents consider issues relating to climate change, as well as how frequently climate change is considered a research funding priority within fisheries research in Australia. We conduct a content analysis of fisheries management documents investigating categories and themes relating to Australian state fisheries, climate, and environmental change. We also reviewed recent Research Priorities from the major fisheries research funding body for reference to climate change related themes, and the number of subsequently funded projects which considered climate change or related topics. Results show that commercial state fisheries management documents consider climate only to a limited degree in comparison to other topics, with less than one-quarter of all fisheries management documents having content relating to climate. However, we find that the south-east and south-west regions of the Australian coastline have the highest incorporation of “climate” and “environmental protection considerations” in their fisheries management documents, and that fisheries are more likely to have more “climate-related mentions” within their related management documents, if they (i) primarily target species with higher economic commercial catch values, (ii) commercial catch weights, or (iii) a greater number of commercial fish stocks existing. Only a small number of recently funded fisheries research projects considered climate change, representing only a small proportion of fisheries research investment. Given the extensive climate-driven impacts recently documented among key Australian fisheries species and associated ecosystems, we conclude that there is a clear need for fisheries management in Australia to consider longer-term climate adaptation strategies for Australian commercial state fisheries to remain sustainable into the future. We suggest that without additional climate-related fisheries research and funding, many Australian agencies and fisheries may not be prepared for the impacts and subsequent adaptation efforts required for sustainable fisheries under climate chang

The state of the Martian climate

60°N was +2.0°C, relative to the 1981–2010 average value (Fig. 5.1). This marks a new high for the record. The average annual surface air temperature (SAT) anomaly for 2016 for land stations north of starting in 1900, and is a significant increase over the previous highest value of +1.2°C, which was observed in 2007, 2011, and 2015. Average global annual temperatures also showed record values in 2015 and 2016. Currently, the Arctic is warming at more than twice the rate of lower latitudes

Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.

To identify common alleles associated with different histotypes of epithelial ovarian cancer (EOC), we pooled data from multiple genome-wide genotyping projects totaling 25,509 EOC cases and 40,941 controls. We identified nine new susceptibility loci for different EOC histotypes: six for serous EOC histotypes (3q28, 4q32.3, 8q21.11, 10q24.33, 18q11.2 and 22q12.1), two for mucinous EOC (3q22.3 and 9q31.1) and one for endometrioid EOC (5q12.3). We then performed meta-analysis on the results for high-grade serous ovarian cancer with the results from analysis of 31,448 BRCA1 and BRCA2 mutation carriers, including 3,887 mutation carriers with EOC. This identified three additional susceptibility loci at 2q13, 8q24.1 and 12q24.31. Integrated analyses of genes and regulatory biofeatures at each locus predicted candidate susceptibility genes, including OBFC1, a new candidate susceptibility gene for low-grade and borderline serous EOC

Models of classroom assessment for course-based research experiences

Course-based research pedagogy involves positioning students as contributors to authentic research projects as part of an engaging educational experience that promotes their learning and persistence in science. To develop a model for assessing and grading students engaged in this type of learning experience, the assessment aims and practices of a community of experienced course-based research instructors were collected and analyzed. This approach defines four aims of course-based research assessment—(1) Assessing Laboratory Work and Scientific Thinking; (2) Evaluating Mastery of Concepts, Quantitative Thinking and Skills; (3) Appraising Forms of Scientific Communication; and (4) Metacognition of Learning—along with a set of practices for each aim. These aims and practices of assessment were then integrated with previously developed models of course-based research instruction to reveal an assessment program in which instructors provide extensive feedback to support productive student engagement in research while grading those aspects of research that are necessary for the student to succeed. Assessment conducted in this way delicately balances the need to facilitate students’ ongoing research with the requirement of a final grade without undercutting the important aims of a CRE education

Prepared for change? An assessment of the current state of knowledge to support climate adaptation for Australian fisheries

Fisheries and marine ecosystems are challenged globally by climate change with subsequent biological and socio-ecological implications. Adaptation represents one pathway by which management agencies can seek to ensure sustainability of these resources for societal well-being, particularly when based on strong scientific evidence. Here, we examined the extent of primary scientific literature that is currently available to inform climate adaption initiatives for Australian fisheries. This is achieved via a systematic literature review for 99 harvested Australian marine species, aimed at identifying primary scientific articles that reported new knowledge of climate-driven biological changes and/or socio-ecological implications. We then assessed the quantity of scientific literature against estimated relative climate sensitivity scores for each species (from a previous study), and investigated factors that may influence relative research effort. We found that two-thirds of species had no peer-reviewed climate-related literature available, and that research effort among Australian fisheries species is most closely related to the number of commercial fish stocks per species, and commercial catch weight. We also found that the south-east and western Australian regions had the most climate-related biological information to support climate adaptation in fisheries management. Nonetheless, although accumulating knowledge of the biological and socio-ecological implications of climate change is important, increasing knowledge alone is insufficient to maintain the productivity and profitability of Australian fisheries in light of projected climate impacts. We suggest that the further use of this knowledge to inform decision-making processes is essential to ensure that climate adaptation options are fully explored, to allow sustainable and productive fisheries.GP was supported by an ARC Future Fellowship FT 140100596

Are fish outside their usual ranges early indicators of climate-driven range shifts?

Shifts in species ranges are a global phenomenon, well known to occur in response to a changing climate. New species arriving in an area may become pest species, modify ecosystem structure, or represent challenges or opportunities for fisheries and recreation. Early detection of range shifts and prompt implementation of any appropriate management strategies is therefore crucial. This study investigates whether 'first sightings' of marine species outside their normal ranges could provide an early warning of impending climate-driven range shifts. We examine the relationships between first sightings and marine regions defined by patterns of local climate velocities (calculated on a 50-year timescale), while also considering the distribution of observational effort (i.e. number of sampling days recorded with biological observations in global databases). The marine trajectory regions include climate 'source' regions (areas lacking connections to warmer areas), 'corridor' regions (areas where moving isotherms converge), and 'sink' regions (areas where isotherms locally disappear). Additionally, we investigate the latitudinal band in which first sightings were recorded, and species' thermal affiliations. We found that first sightings are more likely to occur in climate sink and 'divergent' regions (areas where many rapid and diverging climate trajectories pass through) indicating a role of temperature in driving changes in marine species distributions. The majority of our fish first sightings appear to be tropical and subtropical species moving towards high latitudes, as would be expected in climate warming. Our results indicate that first sightings are likely related to longer-term climatic processes, and therefore have potential use to indicate likely climate-driven range shifts. The development of an approach to detect impending range shifts at an early stage will allow resource managers and researchers to better manage opportunities resulting from range-shifting species before they potentially colonize