In silico analysis of cytochrome p450 genes involved in the metabolism of diterpenes in Coffea.

Brazil is the largest world producer and exporter of coffee, being also the second largest consumer market. Among the main goals of coffee breeders, studies aiming the improvement of cup quality and plant tolerance to biotic and abiotic stresses have extreme importance. Beverage nutraceutical properties and plant defense mechanisms are directly linked to diterpenes present in the lipid fraction of coffee beans, such as cafestol (Caf ) and caveol (Cav). Many members of P 450 gene family are involved in plant secondary metabolism, including diterpenes synthesis. In order to depict biochemical and genetic aspects of diterpenes byosinthesis, we did an in silico characterization of p450 gene family in Coffea spp., and we also quantified Caf and Cav in coffee fruit tissues for further gene expression studies involving diterpens metabolism. Using keyword and Blast search, 1396 ESTs related to Cyt p450 were selected from the Brazilian Coffee Genome Project (http://www.lge.ibi. unicamp.br/cafe). After assembling, we observed 157 putative unigenes, distributed in 92 contigs and 65 singlets. The contigs were analyzed using BLAST X versus public sequences databases (GenBank and Harvest Coffea), confirming their identity to 91 Cyt P450 genes. Expression profiles were inferred by electronic Northern blot of all contigs, allowing the selection of 7 candidate genes for transcriptional analysis based in fruit cDNA library expression. Caf and Cav were measured using HPLC in two different fruit developmental stages: 90 DAF (Days After Flowering) vs 120 DAF and in fruits (120 DAF) treated with 2?M methyl Jasmonate (MJ). Fruits at 120 DAF had an increase of 42% in Cav and 19% in Caf levels in relation to 90DAF fruits. MJ treatment resulted in samples with an average increase of 18% of Cav and 35% of Caf. RNAs were extracted from these samples for future transcriptional analyses. This study establish a platform for expression analysis of cyt P450 candidate genes in RNA samples from tissues with contrasting accumulation of Cav and Caf. (Texte intégral

Terminal-repeat retrotransposons with GAG domain in plant genomes : a new testimony on the complex world of transposable elements

A novel structure of nonautonomous long terminal repeat (LTR) retrotransposons called terminal repeat with GAG domain (TR-GAG) has been described in plants, both in monocotyledonous, dicotyledonous and basal angiosperm genomes. TR-GAGs are relatively short elements in length (<4 kb) showing the typical features of LTR-retrotransposons. However, they carry only one open reading frame coding for the GAG precursor protein involved for instance in transposition, the assembly, and the packaging of the element into the virus-like particle. GAG precursors show similarities with both Copia and Gypsy GAG proteins, suggesting evolutionary relationships of TR-GAG elements with both families. Despite the lack of the enzymatic machinery required for their mobility, strong evidences suggest that TR-GAGs are still active. TR-GAGs represent ubiquitous nonautonomous structures that could be involved in the molecular diversities of plant genomes

Consumo de matéria seca e desempenho de novilhas Nelore alimentadas com dietas contendo cana-de-açúcar hidrolisada

Objetivou-se avaliar o consumo de nutrientes e o desempenho de novilhas Nelore alimentadas com dietas contendo cana-de-açúcar in natura (CN) ou hidrolisada (CH) com 0,5% de Ca(OH)2 armazenada por 24, 48 e 72 horas. Foram utilizadas 24 novilhas com nove meses de idade e 119,6±8,1kg de peso corporal inicial. O delineamento experimental utilizado foi o inteiramente casualisado com quatro tratamentos e seis repetições. O consumo de matéria seca foi reduzido em 29% pela adição de Ca(OH)2, não sendo alterado pelo período de armazenamento da CH. O consumo de cálcio foi incrementado (P<0,05) pela utilização de CH nas dietas, mantendo níveis de ingestão aceitáveis. Novilhas alimentadas com CH armazenada por 24, 48 e 72 horas apresentaram, respectivamente, ganhos de peso 41, 30 e 35% inferior (P<0,05) àquelas alimentadas com CN. O tratamento da cana-de-açúcar com Ca(OH)2 não é recomendado para alimentação de novilhas Nelore, em virtude de limitar a ingestão e reduzir o ganho de peso.The study aimed to evaluate the nutrients intake and performance of Nellore heifers fed with chopped sugarcane, fresh (FS) or treated (HS) with 0.5% of Ca(OH)2 and stored during 24, 48 or 72 hours. It was used twenty-four heifers with nine months age and 119.6±8.1kg of initial body weight. The experimental design was completely randomized with four treatments and six replications. The dry matter intake showed an average reduction of 29% by adding Ca(OH)2, and didn't change with the storage period. Calcium intake was increased by the use of HS in the diet, while maintaining acceptable levels of intake. Heifers fed with HS stored during 24, 48 and 72 hours had, respectively, average daily weight gain of 41, 30 and 35% lower than those fed with FS. The treatment of sugarcane with Ca(OH)2 is not recommended for feeding Nellore heifers, due to limited intake and lower weight gain.Universidade Estadual Paulista “Júlio de Mesquita Filho” (Unesp)UnespUniversidade Federal do Tocantins (UFT)Universidade Federal do Rio Grande do Sul (UFRGS)Universidade Estadual Paulista “Júlio de Mesquita Filho” (Unesp)Unes

Changing state of the climate system

Chapter 2 assesses observed large-scale changes in climate system drivers, key climate indicators and principal modes of variability. Chapter 3 considers model performance and detection/attribution, and Chapter 4 covers projections for a subset of these same indicators and modes of variability. Collectively, these chapters provide the basis for later chapters, which focus upon processes and regional changes. Within Chapter 2, changes are assessed from in situ and remotely sensed data and products and from indirect evidence of longer-term changes based upon a diverse range of climate proxies. The time-evolving availability of observations and proxy information dictate the periods that can be assessed. Wherever possible, recent changes are assessed for their significance in a longer-term context, including target proxy periods, both in terms of mean state and rates of change

Studies of the Cabbibo-Suppressed Decays D+→π0ℓ+νD^+ \to \pi^0 \ell^+ \nu and D+→ηe+νeD^+ \to \eta e^+ \nu_e

Using 4.8 fb$^{-1}$ of data taken with the CLEO II detector, the branching fraction for the Cabibbo-suppressed decay $D^+\to\pi^0\ell^+\nu$ measured relative to the Cabibbo favored decay $D^+\to\bar{K^0}\ell^+\nu$ is found to be $0.046\pm 0.014\pm 0.017$. Using $V_{cs}$ and $V_{cd}$ from unitarity constraints, we determine $| f_+^{\pi}(0)/f_+^K(0)|^2=0.9\pm 0.3\pm 0.3$ We also present a 90% confidence level upper limit for the branching ratio of the decay $D^+ \to \eta e^+\nu_e$ relative to that for $D^+ \to \pi^0 e^+\nu_e$ of 1.5.Comment: 10 page postscript file, postscript file also available through http://w4.lns.cornell.edu/public/CLN

Avaliação do efeito do estresse hídrico no crescimento de cultivares de cana-de-açúcar usando um sistema automático de fertirrigação

O objetivo desta pesquisa foi identificar o efeito de diferentes níveis de estresse hídrico no crescimento das cultivares RB92579, RB855453, RB867515 e RB928064, utilizando um sistema automático de controle dos eventos de fertirrigação, durante o período de formação da cana-de- -açúcar. No período experimental, as plantas foram submetidas a períodos alternados de estresse e de reposição hídrica, por meio de fertirrigações periódicas, cujos limites do potencial matricial de água (Y) foram aqui denominados, para propósitos comparativos, como ausência de estresse, estresse leve, moderado e severo, respectivamente, para os valores críticos de Y de &#8722;10, &#8722;60, &#8722;90 e &#8722;120 kPa. Para avaliação do efeito do estresse hídrico no crescimento da cana-de-açúcar, foi utilizado o modelo sigmoidal com três parâmetros, tendo graus-dia acumulados como variável independente, o qual demonstrou excelente ajuste aos dados de estatura dos colmos (R2aj > 0,95). Na ausência de estresse hídrico, os valores máximos da taxa de elongação dos colmos (TEC) estiveram compreendidos entre 0,23 e 0,26 cm°Cd-1, independentemente da cultivar. Por outro lado, sob estresse severo, os valores máximos da TEC estiveram entre 0,07 e 0,09 cm°Cd-1, também independentemente da cultivar avaliada

Production of pions, kaons and protons in pp collisions at s=900\sqrt{s}=900 GeV with ALICE at the LHC

The production of $\pi^+$, $\pi^-$, $K^+$, $K^-$, p, and pbar at mid-rapidity has been measured in proton-proton collisions at $\sqrt{s} = 900$ GeV with the ALICE detector. Particle identification is performed using the specific energy loss in the inner tracking silicon detector and the time projection chamber. In addition, time-of-flight information is used to identify hadrons at higher momenta. Finally, the distinctive kink topology of the weak decay of charged kaons is used for an alternative measurement of the kaon transverse momentum ($p_{\rm T}$) spectra. Since these various particle identification tools give the best separation capabilities over different momentum ranges, the results are combined to extract spectra from $p_{\rm T}$ = 100 MeV/$c$ to 2.5 GeV/$c$. The measured spectra are further compared with QCD-inspired models which yield a poor description. The total yields and the mean $p_{\rm T}$ are compared with previous measurements, and the trends as a function of collision energy are discussed.Comment: 24 pages, 18 captioned figures, 5 tables, published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/388

TRY plant trait database – enhanced coverage and open access

Plant traits—the morphological, anatomical, physiological, biochemical and phenological characteristics of plants—determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits—almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives