Mate choice for nonadditive genetic benefits and the maintenance of genetic diversity in song sparrows

The lek paradox asserts that strong directional selection via female choice should deplete additive genetic variation in fitness and consequently any benefit to females expressing the preference. Recently, we have provided a novel resolution to the paradox by showing that nonadditive genetic effects such as overdominance can be inherited from parent to offspring, and populations with females that express a mating preference for outbred males maintain higher genetic variation than populations with females that mate randomly. Here, we test our dynamic model using empirical data previously published from a small island population of song sparrows (Melospiza melodia). The model assumes that fitness and male trait expression display overdominance effects. The results demonstrate that female choice for outbred males mediated by directional selection on song repertoire size provides a heritable benefit to offspring through reduced inbreeding depression. Within the population, we estimate the heritability of the inbreeding coefficient to be 0.18 +/- 0.08 (SD). Furthermore, we show that mate choice for outbred males increases fitness-related genetic variation in the population by 12% and thereby reduces inbreeding depression by 1% per generation in typical years and upwards of 15% in severe years. Thus, mate choice may help to stave off population extinction in this and other small populations

IMAGINING REDEMPTION: FICTIONAL FORMS AND SENSORY EXPERIENCE IN EARLY MODERN POETICS FROM SIDNEY TO MILTON

This project examines how four early modern authors—Sir Philip Sidney (d. 1586), William Shakespeare (d. 1616), Sir Francis Bacon (d. 1626), and John Milton (d. 1674)—viewed imaginative writing. I argue that all four writers see fictions as a potential instrument of cosmic redemption with the potential to mitigate the effects of the fall. Starting with Sidney’s Defence of Poesy, this dissertation traces a belief that fictions affect our often-unacknowledged assumptions about what is possible or likely in the world and the judgments we make about whether a fiction is believable or not. According to Sidney’s imaginative poetics, well-crafted fictions that appear to be a mimesis of the material world but contain elements of the poet’s “golden” world shift readers’ presuppositions, which in turn change how they interact with the material world and make the (formerly fictional) vision of the poet into material reality. For these writers, fictions’ impacts are profound but difficult to perceive because they change us and, through our actions, the world, essentially becoming fact because we have made them so. In four chapters this project presents a theory of Sidney’s poetics and the unusual scope it granted to poets’ and readers’ imaginations, as well as the moral and cultural anxieties that his poetic theories provoked in his own writings and those of his literary successors. Chapter two reads Shakespeare’s King Lear as a study of imaginative excess and its civilizational consequences, calling into question whether or not restorative fictions can indeed keep delusive, self-destructive ones at bay. Shakespeare presents a nightmare vision of civilizational collapse in which fictions retain their persuasive power but lose their architectonic impulse. In response to this threat, Bacon’s poetics becomes an experiment in how rigorously we can restrain the imagination from knowledge creation while still keeping an unseen, providential, redemptive teleology in mind. Recognizing the dangers of too much or too little restraint on the imagination, Milton explores a formal solution in Paradise Regained. The poem’s fictional mediation of Jesus’ temptation and use of metaphors steers readers between excessive and deficient imaginative responses to the Son of God

Adaptation of a mouse Doppler echocardiograph system for assessing cardiac function and thermal performance in a juvenile salmonid

Measures of cardiac performance are pertinent to the study of thermal physiology and exercise in teleosts, particularly as they pertain to migration success. Increased heart rate, stroke volume and cardiac output have previously been linked to improved swimming performance and increased upper thermal tolerance in anadromous salmonids. To assess thermal performance in fishes, it has become commonplace to measure the response of maximum heart rate to warming using electrocardiograms. However, electrocardiograms do not provide insight into the hemodynamic characteristics of heart function that can impact whole-animal performance. Doppler echocardiography is a popular tool used to examine live animal processes, including real-time cardiac function. This method allows for nonsurgical measurements of blood flow velocity through the heart and has been used to detect abnormalities in cardiovascular function, particularly in mammals. Here, we show how a mouse Doppler echocardiograph system can be adapted for use in a juvenile salmonid over a range of temperatures and timeframes. Using this compact, noninvasive system, we measured maximum heart rate, atrioventricular (AV) blood flow velocity, the early flow-atrial flow ratio and stroke distance in juvenile Atlantic salmon (Salmo salar) during acute warming. Using histologically determined measures of AV valve area, we show how stroke distance measurements obtained with this system can be used to calculate ventricular inflow volume and approximate cardiac output. Further, we show how this Doppler system can be used to determine cardiorespiratory thresholds for thermal performance, which are increasingly being used to predict the consequences that warming water temperatures will have on migratory fishes

Assortative mating but no evidence of genetic divergence in a species characterized by a trophic polymorphism

Disruptive selection is a process that can result in multiple sub-groups within a population, referred to as diversification. Foraging related divergence has been described in many taxa, but many questions remain about the contribution of such divergence to reproductive isolation and potentially sympatric speciation. Here we use stable isotope analysis of diet and morphological analysis of body shape to examine phenotypic divergence between littoral and pelagic foraging ecomorphs in a population of pumpkinseed sunfish (Lepomis gibbosus). We then examine reproductive isolation between ecomorphs by comparing the isotopic compositions of nesting males to eggs from their nests (a proxy for maternal diet), and use nine microsatellite loci to examine genetic divergence between ecomorphs. Our data support the presence of distinct foraging ecomorphs in this population and indicate that there is significant positive assortative mating based on diet. We did not find evidence of genetic divergence between ecomorphs, however, indicating that isolation is either relatively recent or is not strong enough to result in genetic divergence at the microsatellite loci. Based on our findings, pumpkinseed sunfish represent a system in which to further explore the mechanisms by which natural and sexual selection contribute to divergence, prior to the occurrence of sympatric speciation

Transcriptome response of Atlantic salmon (Salmo salar) to competition with ecologically similar non-native species

Non-native species may be introduced either intentionally or unintentionally, and their impact can range from benign to highly disruptive. Non-native salmonids were introduced into Lake Ontario, Canada, to provide recreational fishing opportunities; however, the establishment of those species has been proposed as a significant barrier to the reintroduction of native Atlantic salmon (Salmo salar) due to intense interspecific competition. In this study, we compared population differences of Atlantic salmon in transcriptome response to interspecific competition. We reared Atlantic salmon from two populations (LaHave River and Sebago Lake) with fish of each of three non-native salmonids (Chinook salmon Oncorhynchus tshawytscha, rainbow trout O. mykiss, and brown trout S. trutta) in artificial streams. We used RNA-seq to assess transcriptome differences between the Atlantic salmon populations and the responses of these populations to the interspecific competition treatments after 10 months of competition in the stream tanks. We found that population differences in gene expression were generally greater than the effects of interspecific competition. Interestingly, we found that the two Atlantic salmon populations exhibited similar responses to interspecific competition based on functional gene ontologies, but the specific genes within those ontologies were different. Our transcriptome analyses suggest that the most stressful competitor (as measured by the highest number of differentially expressed genes) differs between the two study populations. Our transcriptome characterization highlights the importance of source population selection for conservation applications, as organisms with different evolutionary histories can possess different transcriptional responses to the same biotic stressors. The results also indicate that generalized predictions of the response of native species to interactions with introduced species may not be appropriate without incorporating potential population-specific response to introduced species

Emergent Trophic Interactions Following the Chinook Salmon Invasion of Patagonia

In their native range, Pacific salmon (Oncorhynchus spp.) have strong interactions with a multitude of species due to the annual pulse of marine-derived nutrients that they deliver to streams and forests when they spawn and die. Over the past few decades, Chinook salmon (Oncorhynchus tshawytscha) has established non-native populations throughout the Patagonia region of southern South America. Here, we provide the first assessment of the pathways through which salmon-derived nutrients enter stream and forest food webs in Patagonia by surveying multiple streams in southern Chile to identify invertebrate and vertebrate consumers of salmon carcasses and summarizing all documented trophic interactions of Chinook salmon in Patagonia. Blowflies (Calliphoridae) were the dominant colonizer of carcasses in the riparian zone, and midge flies (Chironomidae) were the most common invertebrate on submerged carcasses. Camera trap monitoring in the riparian zone revealed consumption of carcasses or carcass-associated invertebrates by the insectivorous passerine bird “chucao” (Scelorchilis rubecula), small rodents (black rat Rattus rattus, house mouse Mus musculus, and/or colilargo Oligoryzomys longicaudatus), the South American fox “culpeo” (Lycalopex culpaeus), and the invasive American mink (Neovison vison). A mink was filmed transferring a carcass from stream to streambank, indicating that vertebrate scavenging likely increases the degree to which marine-derived nutrients enter terrestrial food webs. The native taxa that consume salmon are closely related to species that benefit from salmon consumption in North America, suggesting that the pathways of salmon nutrient incorporation in North American food webs have functionally re-emerged in South America. Similarly, non-native trout (Oncorhynchus mykiss and Salmo trutta) and mink consume salmon in Patagonia, and their eco-evolutionary history of coexistence with salmon could mean that they are preadapted for salmon consumption and could thus be key beneficiaries of this invasion. Expanded monitoring of the abundance and impacts of salmon will be vital for understanding how these novel inputs of marine-derived nutrients alter Patagonian food webs

Environmental impacts of the deep-water oil and gas industry: a review to guide management strategies

The industrialization of the deep sea is expanding worldwide. Increasing oil and gas exploration activities in the absence of sufficient baseline data in deep-sea ecosystems has made environmental management challenging. Here, we review the types of activities that are associated with global offshore oil and gas development in water depths over 200 m, the typical impacts of these activities, some of the more extreme impacts of accidental oil and gas releases, and the current state of management in the major regions of offshore industrial activity including 18 exclusive economic zones. Direct impacts of infrastructure installation, including sediment resuspension and burial by seafloor anchors and pipelines, are typically restricted to a radius of ~100 m on from the installation on the seafloor. Discharges of water-based and low-toxicity oil-based drilling muds and produced water can extend over 2 km, while the ecological impacts at the population and community levels on the seafloor are most commonly on the order of 200–300 m from their source. These impacts may persist in the deep sea for many years and likely longer for its more fragile ecosystems, such as cold-water corals. This synthesis of information provides the basis for a series of recommendations for the management of offshore oil and gas development. An effective management strategy, aimed at minimizing risk of significant environmental harm, will typically encompass regulations of the activity itself (e.g., discharge practices, materials used), combined with spatial (e.g., avoidance rules and marine protected areas), and temporal measures (e.g., restricted activities during peak reproductive periods). Spatial management measures that encompass representatives of all of the regional deep-sea community types is important in this context. Implementation of these management strategies should consider minimum buffer zones to displace industrial activity beyond the range of typical impacts: at least 2 km from any discharge points and surface infrastructure and 200 m from seafloor infrastructure with no expected discharges. Although managing natural resources is, arguably, more challenging in deep-water environments, inclusion of these proven conservation tools contributes to robust environmental management strategies for oil and gas extraction in the deep sea.Copyright © 2016 Cordes, Jones, Schlacher, Amon, Bernardino, Brooke, Carney, DeLeo, Dunlop, Escobar-Briones, Gates, Génio, Gobin, Henry, Herrera, Hoyt, Joye, Kark, Mestre, Metaxas, Pfeifer, Sink, Sweetman and Witte. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms

Deep GEMINI GMOS-IFU spectroscopy of BAL QSOs: I. Decoupling the BAL, QSO, starburst, NLR, supergiant bubbles and galactic wind in Mrk 231

In this work we present the first results of a study of BAL QSOs (at low and high redshift), based on very deep Gemini GMOS integral field spectroscopy. In particular, the results obtained for the nearest BAL IR QSO Mrk 231 are presented. Very deep three-dimensional spectra and maps clearly show that the BAL systems I and II are extended (reaching 1.4-1.6" = 1.2-1.3 kpc, from the nucleus) and clearly elongated at the position angle close to the radio jet PA. Which suggest that the BAL systems I and II are both associated with the radio jet, and supporting the bipolar jet-wind model for some BALs. For the nuclear region of Mrk 231, the QSO and host-galaxy components were modelled, using a new technique of decoupling 3D spectra. From this study, the following main results were found: (i) in the pure host galaxy spectrum an extreme nuclear starburst component was clearly observed, mainly as a very strong increase in the flux, at the blue wavelengths; (ii) the BAL system I is observed in the spectrum of the host galaxy; (iii) in the clean/pure QSO emission spectrum, only broad lines were detected. 3D GMOS individual spectra (specially in the IR Ca II triplet) and maps confirm the presence of an extreme and young nuclear starburst (8 < age < 15 Myr), which was detected mainly in a ring or toroid with a radius r = 0.3" = 200 pc, around the very nucleus. The physical properties of the four expanding nuclear bubbles were analysed, using the GMOS 3D spectra and maps. These results suggest that an important part of the nuclear NLR is generated by the OF process and the associated low velocity ionizing shocks.Comment: 51 pages, 20 figures, Submitted MNRA

Brain Transcriptional Profiles of Male Alternative Reproductive Tactics and Females in Bluegill Sunfish

We thank Scott Colborne for his help in collecting bluegill, Dave Bridges for providing the R script to convert Ensemble IDs to stickleback homologs, and David Winter and Jeramia Ory for providing Python script used in the bioinformatics analyses. We thank Doug Haywick for producing Fig 1. We also thank Shawn Garner, Tim Hain, Lauren Kordonowy, and Lindsay Havens, and three anonymous reviewers for helpful comments on the manuscript.Bluegill sunfish (Lepomis macrochirus) are one of the classic systems for studying male alternative reproductive tactics (ARTs) in teleost fishes. In this species, there are two distinct life histories: parental and cuckolder, encompassing three reproductive tactics, parental, satellite, and sneaker. The parental life history is fixed, whereas individuals who enter the cuckolder life history transition from sneaker to satellite tactic as they grow. For this study, we used RNAseq to characterize the brain transcriptome of the three male tactics and females during spawning to identify gene ontology (GO) categories and potential candidate genes associated with each tactic. We found that sneaker males had higher levels of gene expression differentiation compared to the other two male tactics. Sneaker males also had higher expression in ionotropic glutamate receptor genes, specifically AMPA receptors, compared to other males, which may be important for increased spatial working memory while attempting to cuckold parental males at their nests. Larger differences in gene expression also occurred among male tactics than between males and females. We found significant expression differences in several candidate genes that were previously identified in other species with ARTs and suggest a previously undescribed role for cAMP-responsive element modulator (crem) in influencing parental male behaviors during spawning.Yeshttp://www.plosone.org/static/editorial#pee

The Science Performance of JWST as Characterized in Commissioning

This paper characterizes the actual science performance of the James Webb Space Telescope (JWST), as determined from the six month commissioning period. We summarize the performance of the spacecraft, telescope, science instruments, and ground system, with an emphasis on differences from pre-launch expectations. Commissioning has made clear that JWST is fully capable of achieving the discoveries for which it was built. Moreover, almost across the board, the science performance of JWST is better than expected; in most cases, JWST will go deeper faster than expected. The telescope and instrument suite have demonstrated the sensitivity, stability, image quality, and spectral range that are necessary to transform our understanding of the cosmos through observations spanning from near-earth asteroids to the most distant galaxies.Comment: 5th version as accepted to PASP; 31 pages, 18 figures; https://iopscience.iop.org/article/10.1088/1538-3873/acb29