The trophic relationships of several commercial finfish species from the southwest Atlantic.

This study aims to quantify the trophic relationships of seven commercially valuable predatory fish species (Argentine hake Merluccius hubbsi, southern hake Merluccius australis, Patagonian toothfish Dissostichus eleginoides, southern blue whiting Micromesistius australis australis, red cod Salilota australis, kingclip Genypterus blacodes and hoki Macruronus magellanicus) over a two-year period. A total of 1590 stomachs from these species was collected from the high seas of the southwest Atlantic and in the waters around the Falkland Islands. The percentage similarity index shows that all species except southern hake occupy very similar trophic positions, with a high percentage dietary overlap. Despite this, niche breadths were relatively narrow, with the majority of feeding occurring on locally abundant prey items (notothiniid fish and the squids Illex argentinus and Loligo gahi). In the two species for which sample size was largest, Argentine hake and kingclip, geographical differences in diet were found, which may be related to regional variation in prey abundance. The results are discussed in relation to the seasonal migrations of predators and prey and the hydroclimate regime

Heritable risk factors associated with language impairments

There is a strong genetic contribution to children’s language and literacy impairments. The aim of this study was to determine which aspects of the phenotype are familial by comparing 34 parents of probands with language/literacy impairments and 33 parents of typically developing probands. The parents responded to questionnaires regarding previous history for language/reading impairment and participated in psychometric testing. The psychometric test battery consisted of tests assessing non-verbal IQ, short-term memory, articulation, receptive grammar, reading abilities and spelling. Self-report measures demonstrated a higher prevalence of language and literacy impairments in parents of affected probands (32%) compared with parents of unaffected probands (6%). The two groups of parents differed significantly in their performance on the non-word repetition, oromotor and digit span tasks. Non-word repetition gave the best discrimination between the parent groups even when the data from the parents who actually were impaired as ascertained by direct testing or self-report were removed from the analyses. This suggests that non-word repetition serves as a marker of a family risk for language impairment. The paper concludes with a discussion of issues associated with ascertainment of specific language impairment (SLI)

Morphometric and meristic variation in Argentine hake (Merluccius hubbsi) and southern hake (Merluccius australis) from the southwest Atlantic.

Samples of Merluccius hubbsi (N=147) were collected from the southwest Atlantic, in the high seas at 42o S and 46oS and from the waters around the Falkland Islands. A sample of M. australis (N=23) was also collected in Falkland Islands waters. Variation in the population structure was investigated using multivariate analysis of a total of external and skeletal morphometric data, counts of fin rays and teeth, and measurements on scales. All measurements were standardised to mean body size and each character set was analysed separately. Principle components analysis and discriminant analysis were used to identify differences between M. hubbsi from different areas and differences between the two species. The results indicate the presence of two groups of Merluccius hubbsi within the study area, one found on the high seas and one in the waters around the Falkland Islands. Results are discussed in relation to the reproductive and trophic migrations of M. hubbsi, the relative importance of genetic and environmental differences, and the results of similar studies from the southwest Atlantic

Development and external validation study of a melanoma risk prediction model incorporating clinically assessed naevi and solar lentigines

Background: Melanoma risk prediction models could be useful for matching preventive interventions to patients’ risk. Objectives: To develop and validate a model for incident first‐primary cutaneous melanoma using clinically assessed risk factors. Methods: We used unconditional logistic regression with backward selection from the Australian Melanoma Family Study (461 cases and 329 controls) in which age, sex and city of recruitment were kept in each step, and we externally validated it using the Leeds Melanoma Case–Control Study (960 cases and 513 controls). Candidate predictors included clinically assessed whole‐body naevi and solar lentigines, and self‐assessed pigmentation phenotype, sun exposure, family history and history of keratinocyte cancer. We evaluated the predictive strength and discrimination of the model risk factors using odds per age‐ and sex‐adjusted SD (OPERA) and the area under curve (AUC), and calibration using the Hosmer–Lemeshow test. Results: The final model included the number of naevi ≥ 2 mm in diameter on the whole body, solar lentigines on the upper back (a six‐level scale), hair colour at age 18 years and personal history of keratinocyte cancer. Naevi was the strongest risk factor; the OPERA was 3·51 [95% confidence interval (CI) 2·71–4·54] in the Australian study and 2·56 (95% CI 2·23–2·95) in the Leeds study. The AUC was 0·79 (95% CI 0·76–0·83) in the Australian study and 0·73 (95% CI 0·70–0·75) in the Leeds study. The Hosmer–Lemeshow test P‐value was 0·30 in the Australian study and < 0·001 in the Leeds study. Conclusions: This model had good discrimination and could be used by clinicians to stratify patients by melanoma risk for the targeting of preventive interventions. What's already known about this topic? Melanoma risk prediction models may be useful in prevention by tailoring interventions to personalized risk levels. For reasons of feasibility, time and cost many melanoma prediction models use self‐assessed risk factors. However, individuals tend to underestimate their naevus numbers. What does this study add? We present a melanoma risk prediction model, which includes clinically‐assessed whole‐body naevi and solar lentigines, and self‐assessed risk factors including pigmentation phenotype and history of keratinocyte cancer. This model performs well on discrimination, the model's ability to distinguish between individuals with and without melanoma, and may assist clinicians to stratify patients by melanoma risk for targeted preventive interventions

Clouds, shadows, or twilight? Mayfly nymphs recognise the difference

1. We examined the relative changes in light intensity that initiate night-time locomotor activity changes in nymphs of the mayfly, Stenonema modestum (Heptageniidae). Tests were carried out in a laboratory stream to examine the hypothesis that nymphs increase their locomotion in response to the large and sustained reductions in relative light intensity that take place during twilight but not to short-term daytime light fluctuations or a minimum light intensity threshold. Ambient light intensity was reduced over a range of values representative of evening twilight. Light was reduced over the same range of intensities either continuously or in discrete intervals while at the same time nymph activity on unglazed tile substrata was video recorded. 2. Nymphs increased their locomotor activity during darkness in response to large, sustained relative light decreases, but not in response to short-term, interrupted periods of light decrease. Nymphs did not recognise darkness unless an adequate light stimulus, such as large and sustained relative decrease in light intensity, had taken place. 3. We show that nymphs perceive light change over time and respond only after a lengthy period of accumulation of light stimulus. The response is much lengthier than reported for other aquatic organisms and is highly adaptive to heterogeneous stream environments

b-Jet Identification in the D0 Experiment

Algorithms distinguishing jets originating from b quarks from other jet flavors are important tools in the physics program of the D0 experiment at the Fermilab Tevatron p-pbar collider. This article describes the methods that have been used to identify b-quark jets, exploiting in particular the long lifetimes of b-flavored hadrons, and the calibration of the performance of these algorithms based on collider data.Comment: submitted to Nuclear Instruments and Methods in Physics Research

The effect on melanoma risk of genes previously associated with telomere length.

Telomere length has been associated with risk of many cancers, but results are inconsistent. Seven single nucleotide polymorphisms (SNPs) previously associated with mean leukocyte telomere length were either genotyped or well-imputed in 11108 case patients and 13933 control patients from Europe, Israel, the United States and Australia, four of the seven SNPs reached a P value under .05 (two-sided). A genetic score that predicts telomere length, derived from these seven SNPs, is strongly associated (P = 8.92x10(-9), two-sided) with melanoma risk. This demonstrates that the previously observed association between longer telomere length and increased melanoma risk is not attributable to confounding via shared environmental effects (such as ultraviolet exposure) or reverse causality. We provide the first proof that multiple germline genetic determinants of telomere length influence cancer risk.This is the final version of the article. It first appeared from Oxford University Press via http://dx.doi.org/10.1093/jnci/dju26

Mathematical and computational modelling of vegetated soil incorporating hydraulically-driven finite strain deformation

In this paper a new model for the hydro-mechanical behaviour of rooted soils is developed. It is a physically-based model that couples finite strain soil deformation with unsaturated water and air flow, while improving on existing cohesion-based approaches to mechanical root reinforcement and empirical soil water-uptake approaches typically used to deal with rooted slopes. The model is used to show that the dynamics of soil-water pressure and soil deformation depend strongly on the physics of the root-water uptake and the elasto-plastic soil mechanics. Root water uptake can cause suctions and corresponding soil shrinkage sufficiently large to necessitate a finite-strain approach. Although this deformation can change the intrinsic permeability, hydraulic conductivity remains dominated by the water content. The model incorporates simultaneous air-flow, but this is shown to be unimportant for soil-water dynamics under the conditions assumed in example simulations. The mechanical action of roots is incorporated via a root stress tensor and a simulation is used to show how root tension is mobilised within a swelling soil. The developed model may be used to simulate both laboratory experiments and full-scale vegetated slopes