Functionomics: the analysis of a postgenomic concept on the basis of pregenomic pharmacological studies in smooth muscle

The term functionomics (Amin 2003, Neumann et al. 2004) refers to a postgenomic integrated Systems Biology (Attur et al. 2002) using a multidimensional approach for cells, tissues and organs. It considers current or future involvement among genomics, proteomics or metabolomics, including the main factors that cause biological responses and modulation under different conditions. Our objective in the present review is to summarize the contemporary understanding of functionomics of smooth muscle pharmacology, based on the results obtained on the pregenomic era during several years in our laboratory. The present approach is based on the knowledge of the dynamics of the receptor system, which comprises a cascade of phenomena, leading from the drug administration to the final biological response. We will describe several conditions in which the final effect is modified, based on perturbations induced on drug absorption, distribution, metabolism, interaction with receptors and mobilization of second messengers, as well as by interactions with a second receptor system. We will also discuss the gaps that need to be fulfilled in order to obtain a clear and better understanding of the receptor system in smooth muscle, and to narrow the bridge between ourknowledge of the function of biological systems, genomics, and other recently introduced areas.O termo funcionômica (Amin 2003, Neumann et al. 2004) refere-se a um estudo posgenômico de Biologia de Sistemas (Attur et al. 2002), usando um enfoque multidimensional, dinâmico e simultâneo para células, tecidos e órgãos. Considera o envolvimento presente e futuro da genômica, proteômica e metabolômica incluindo os principais fatores que causam a resposta biológica final e sua modulação em diferentes condições. Nosso objetivo na presente revisão é resumir o nosso conhecimento atual em relação à funcionômica da farmacologia da musculatura lisa, baseada em resultados que obtivemos ainda na era pregenômica, durante vários anos em nosso laboratório. O presente enfoque baseia-se no que sabemos hoje em dia sobre a dinâmica do sistema receptor, que compreende uma cascata de fenômenos, que vão desde a administração de uma droga até a resposta biológica. Descreveremos várias condições nas quais a resposta é modificada, com base em perturbações produzidas na absorção, distribuição e metabolismo de fármacos, interação com receptores, mobilização de segundos mensageiros, bem como interações com um segundo sistema receptor. Discutiremos também o papel da genômica e as inúmeras falhas que devem ser preenchidas, para que se chegue a um conhecimento integrado e cada vez melhor dos sistemas receptores na musculatura lisa e para encurtar a ponte entre as funções do sistema biológico, genômica e outras áreas recentemente introduzidas.Universidade Federal de São Paulo (UNIFESP) Departamento de FarmacologiaUNIFESP, Depto. de FarmacologiaSciEL

Methods of acute biological assays in guinea-pigs for the study of toxicity and innocuity of drugs and chemicals

In this study, 602 samples were tested by the following assays performed at the animal facilities (Cedeme) of the Federal University of São Paulo (UNIFESP): 385 for dermal irritability, 90 for ocular irritability (discontinued in 1995), 31 for systemic toxicity by injection, 26 for oral acute toxicity, 15 for toxicity by intracutaneous injection, 15 for skin sensitization, 15 for toxicity of serum and vaccines for human use, 14 for toxicity by intramuscular implantation, 7 for pyrogens, 2 for acute dermal toxicity, and 2 for irritation of mucous membrane. The following agents were tested: cosmetics and related substances (42.0%), chemicals used in industry (32.9%), plastics, rubber, and other polymers (15.9%), agrotoxics (4.0%), medicines (2.7%), and vaccines (2.5%). In the present description, emphasis was given to tests of dermal irritability and sensitization. This work was conducted entirely in animal facilities, according to our general belief that animal facilities at universities, while considering ethic principles and sanitary, genetic, nutritional, and pathophysiological controls, also require laboratories specialized in areas such as transgenics, cryopreservation, ambiental physiology, functional genomics, alternative models, and mainly activities and research on methods in toxicology, as focused in this study.Descrevemos os testes usados em ensaios biológicos de curta duração para estudo de toxicidade e inocuidade de cosméticos, fármacos e outras substâncias químicas, feitos no Biotério Central/Cedeme da UNIFESP, de 1986 a 2000. Testamos 602 amostras nos seguintes ensaios: 385 de irritação cutânea, 90 de irritação ocular (até 1995), 31 de toxicidade sistêmica por injeção, 26 de toxicidade oral aguda, 15 de toxicidade por aplicação intracutânea, 15 de sensibilização da pele, 15 de toxicidade de soros e vacinas de uso humano, 14 de toxicidade por implantação intramuscular, 7 de pirogênio, 2 de toxicidade dérmica aguda e 2 de irritação da mucosa. Os agentes testados foram: cosméticos e suas matérias-primas (42,0%), substâncias químicas industriais (32,9%), plásticos, borrachas e outros polímeros (15,9%), defensivos agrícolas (4,0%), medicamentos (2,7%) e vacinas (2,5%). Aqui daremos ênfase aos ensaios de irritação e sensibilização cutânea. Este trabalho foi feito inteiramente em biotério, em consonância com a idéia de que os biotérios em universidades, sem deixar de considerar os princípios éticos pertinentes e sem desconsiderar a presença de laboratórios para controles sanitário, genético, nutricional e fisiopatológico, devem ter também laboratórios para pesquisa em transgênicos, criopreservação, fisiologia ambiental, genômica funcional, modelos alternativos e fundamentalmente toxicologia, entre outros.Federal University of São Paulo Center for Development of Models for Medicine and Experimental BiologyFederal University of São Paulo Department of PharmacologyUNIFESP, Center for Development of Models for Medicine and Experimental BiologyUNIFESP, Department of PharmacologySciEL

TTX-sensitive Na+ and nifedipine-sensitive Ca2+ channels in rat vas deferens smooth muscle cells

The inward currents in single smooth muscle cells (SMC) isolated from epididymal part of rat vas deferens have been studied using whole-cell patch-clamp method. Depolarising steps from holding potential -90 mV evoked inward current with fast and slow components. the component with slow activation possessed voltage-dependent and pharmacological properties characteristic for Ca2+ current carried through L-type calcium channels (I-Ca). the fast component of inward current was activated at around -40 mV, reached its peak at 0 mV, and disappeared upon removal of Na ions from bath solution. This current was blocked in dose-dependent manner by tetrodotoxin (TTX) with an apparent dissociation constant of 6.7 nM. On the basis of voltage-dependent characteristics, TTX sensitivity of fast component of inward current and its disappearance in Na-free solution it is suggested that this current is TTX-sensitive depolarisation activated sodium current (I-Na) Cell dialysis with a pipette solution containing no macroergic compounds resulted in significant inhibition of I-Ca (depression of peak I-Ca by about 81% was observed by 13 min of dialysis), while I-Na remained unaffected during 50 min of dialysis. These data draw first evidence for the existence of TTX-sensitive Na+ current in single SMC isolated from rat vas deferens. These Na+ channels do not appear to be regulated by a phosphorylation process under resting conditions. (C) 1999 Elsevier Science B.V. All rights reserved.Natl Acad Sci Ukraine, Bogomoletz Inst Physiol, Nerve Muscle Physiol Dept, UA-24 Kiev, UkraineUniversidade Federal de São Paulo, Escola Paulista Med, Dept Pharmacol, São Paulo, BrazilUniversidade Federal de São Paulo, Escola Paulista Med, Dept Pharmacol, São Paulo, BrazilWeb of Scienc

A discrete, unitary, causal theory of quantum gravity

A discrete model of Lorentzian quantum gravity is proposed. The theory is completely background free, containing no reference to absolute space, time, or simultaneity. The states at one slice of time are networks in which each vertex is labelled with two arrows, which point along an adjacent edge, or to the vertex itself. The dynamics is specified by a set of unitary replacement rules, which causally propagate the local degrees of freedom. The inner product between any two states is given by a sum over histories. Assuming it converges (or can be Abel resummed), this inner product is proven to be hermitian and fully gauge-degenerate under spacetime diffeomorphisms. At least for states with a finite past, the inner product is also positive. This allows a Hilbert space of physical states to be constructed.Comment: 38 pages, 9 figures, v3 added to exposition and references, v4 expanded prospects sectio

Lamina-specific cortical dynamics in human visual and sensorimotor cortices

10.7554/eLife.33977.001Distinct anatomical and spectral channels are thought to play specialized roles in the communication within cortical networks. While activity in the alpha and beta frequency range (7 – 40 Hz) is thought to predominantly originate from infragranular cortical layers conveying feedback-related information, activity in the gamma range (>40 Hz) dominates in supragranular layers communicating feedforward signals. We leveraged high precision MEG to test this proposal, directly and non-invasively, in human participants performing visually cued actions. We found that visual alpha mapped onto deep cortical laminae, whereas visual gamma predominantly occurred more superficially. This lamina-specificity was echoed in movement-related sensorimotor beta and gamma activity. These lamina-specific pre- and post- movement changes in sensorimotor beta and gamma activity suggest a more complex functional role than the proposed feedback and feedforward communication in sensory cortex. Distinct frequency channels thus operate in a lamina-specific manner across cortex, but may fulfill distinct functional roles in sensory and motor processes

Responsividade relativa de receptores farmacológicos (P): considerações teóricas e determinação experimental

BV UNIFESP: Teses e dissertaçõe