Investigating the effect of Lipid Bioconjugates on Gapmer ASO activity and toxicity

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The HD-GYP Domain Protein RpfG of Xanthomonas oryzae pv. oryzicola Regulates Synthesis of Extracellular Polysaccharides that Contribute to Biofilm Formation and Virulence on Rice

Bacterial leaf streak caused by Xanthomonas oryzae pv. oryzicola (Xoc) is one of the most important diseases in rice. However, little is known about the pathogenicity mechanisms of Xoc. Here we have investigated the function of three HD-GYP domain regulatory proteins in biofilm formation, the synthesis of virulence factors and virulence of Xoc. Deletion of rpfG resulted in altered production of extracellular polysaccharides (EPS), abolished virulence on rice and enhanced biofilm formation, but had little effect on the secretion of proteases and motility. In contrast, mutational analysis showed that the other two HD-GYP domain proteins had no effect on virulence factor synthesis and tested phenotypes. Mutation of rpfG led to up-regulation of the type III secretion system and altered expression of three putative glycosyltransferase genes gumD, pgaC and xagB, which are part of operons directing the synthesis of different extracellular polysaccharides. The pgaABCD and xagABCD operons were greatly up-regulated in the Xoc Delta rpfG mutant, whereas the expression of the gum genes was unaltered or slightly enhanced. The elevated biofilm formation of the Xoc Delta rpfG mutant was dramatically reduced upon deletion of gumD, xagA and xagB, but not when pgaA and pgaC were deleted. Interestingly, only the Delta gumD mutant, among these single gene mutants, exhibits multiple phenotype alterations including reduced biofilm and EPS production and attenuated virulence on rice. These data indicate that RpfG is a global regulator that controls biofilm formation, EPS production and bacterial virulence in Xoc and that both gumD- and xagB-dependent EPS contribute to biofilm formation under different conditions

2008-2009 Single Lovers of Classical Music

https://spiral.lynn.edu/conservatory_otherseasonalconcerts/1031/thumbnail.jp

Exploration of Scaling Effects on Coarse Resolution Land Surface Phenology

Numerous land surface phenology (LSP) datasets have been produced from various coarse resolution satellite data and different detection algorithms from regional to global scales. In contrast to field-observed phenological events that are defined by clearly evident organismal changes with biophysical meaning, current approaches to detecting transitions in LSP only determine the timing of variations in remotely sensed observations of surface greenness. Since activities to bridge LSP and field observations are challenging and limited, our understanding of the biophysical characteristics of LSP transitions is poor. Therefore, we set out to explore the scaling effects on LSP transitions at the nominal start of growing season (SOS) by comparing detections from coarse resolution data with those from finer resolution imagery. Specifically, using a hybrid piecewise-logistic-model-based LSP detection algorithm, we detected SOS in the agricultural core of the United States—central Iowa—at two scales: first, at a finer scale (30 m) using reflectance generated by fusing MODIS data with Landsat 8 OLI data (OLI SOS) and, second, at a coarser resolution of 500 m using Visible Infrared Imaging Radiometer Suite (VIIRS) observations. The VIIRS SOS data were compared with OLI SOS that had been aggregated using a percentile approach at various degrees of heterogeneity. The results revealed the complexities of SOS detections and the scaling effects that are latent at the coarser resolution. Specifically, OLI SOS variation defined using standard deviation (SD) was as large as 40 days within a highly spatially heterogeneous VIIRS pixel; whereas, SD could be \u3c 10 days for a more homogeneous set of pixels. Furthermore, the VIIRS SOS detections equaled the OLI SOS (with an absolute difference less than one day) in N60% of OLI pixels within a homogeneous VIIRS pixel, but in \u3c 20% of OLI pixels within a spatially heterogeneous VIIRS pixel. Moreover, the SOS detections in a coarser resolution pixel reflected the timing at which vegetation greenup onset occurred in 30% of area, despite variation in SOS heterogeneities. This result suggests that (1) the SOS detections at coarser resolution are controlled more by the earlier SOS pixels at the finer resolution rather than by the later SOS pixels, and (2) it should be possible to well simulate the coarser SOS value by selecting the timing at 30th percentile SOS at the finer resolution. Finally, it was demonstrated that in homogeneous areas the VIIRS SOS was comparable with OLI SOS with an overall difference of \u3c 5 days

Monitoring tritrophic biocontrol interactions between Bacillus spp., Fusarium oxysporum f. sp. cubense, tropical race 4 and banana plants in vivo based on fluorescent transformation system

Bacillus spp. are effective biocontrol agents for Fusarium wilt of banana, tropical race 4 (TR4). This study explores the colonization by B. subtilis, B. velezensis and B. amyloliquefaciens of host banana plants and elucidates the mechanism of antagonistic TR4 biocontrol. The authors selected one B. subtilis strain, three B. velezensis strains and three B. amyloliquefaciens strains that are proven to significantly inhibit TR4 in vitro, optimized the genetic transformation conditions and explored their colonization process in banana plants. The results showed that we successfully constructed an optimized fluorescent electro-transformation system (OD600 of bacteria concentration = 0.7, plasmid concentration = 50 ng/μL, plasmid volume = 2 μL, transformation voltage = 1.8kV, transformation capacitance = 400Ω) of TR4-inhibitory Bacillus spp. strains. The red fluorescent protein (RFP)-labelled strains were shown to have high stability with a plasmid-retention frequency above 98%, where bacterial growth rates and TR4 inhibition are unaffected by fluorescent plasmid insertion. In vivo colonizing observation by Laser Scanning Confocal Microscopy (LSCM) and Scanning Electron Microscopy (SEM) showed that Bacillus spp. can colonize the internal cells of banana plantlets roots. Further fluorescent observation by (LSCM) showed these RFP-labelled bacteria exhibit chemotaxis (chemotaxis ratio was 1.85±0.04) towards green fluorescent protein (GFP)-labelled TR4 hyphae in banana plants. We conclude that B. subtilis, B. velezensis and B. amyloliquefaciens can successfully colonize banana plants and interact with TR4. Monitoring its dynamic interaction with TR4 and its biocontrol mechanism is under further study

Crop Diversity for Yield Increase

Traditional farming practices suggest that cultivation of a mixture of crop species in the same field through temporal and spatial management may be advantageous in boosting yields and preventing disease, but evidence from large-scale field testing is limited. Increasing crop diversity through intercropping addresses the problem of increasing land utilization and crop productivity. In collaboration with farmers and extension personnel, we tested intercropping of tobacco, maize, sugarcane, potato, wheat and broad bean – either by relay cropping or by mixing crop species based on differences in their heights, and practiced these patterns on 15,302 hectares in ten counties in Yunnan Province, China. The results of observation plots within these areas showed that some combinations increased crop yields for the same season between 33.2 and 84.7% and reached a land equivalent ratio (LER) of between 1.31 and 1.84. This approach can be easily applied in developing countries, which is crucial in face of dwindling arable land and increasing food demand