Long-Term Temporal Analysis of the Human Fecal Microbiota Revealed a Stable Core of Dominant Bacterial Species

Next-generation sequencing has greatly contributed to an improved ecological understanding of the human gut microbiota. Nevertheless, questions remain regarding the characteristics of this ecosystem and the ecological processes that shape it, and controversy has arisen regarding the stability of the bacterial populations and the existence of a temporal core. In this study, we have characterized the fecal microbial communities of three human individuals over a one-year period by 454 pyrosequencing of 16S rRNA tags in order to investigate the temporal characteristics of the bacterial communities. The findings revealed a temporal core of 33 to 40 species-level Operational Taxonomic Units (OTUs) within subjects. Although these OTUs accounted only for around 12% of the total OTUs detected, they added up to \u3e75% of the total sequences obtained for each individual. In order to determine the capacity of the sequencing and bioinformatic approaches applied during this study to accurately determine the proportion of a core microbiota, we analyzed the fecal microbiota of nine mice with a defined three-member community. This experiment revealed that the sequencing approach inflated the amount of rare OTUs, which introduced a significant degree of artificial variation across samples, and hence reduced the apparent fraction of shared OTUs. However, when assessing the data quantitatively by focusing on dominant lineages, the sequencing approaches deliver an accurate representation of the community. In conclusion, this study revealed that the human fecal microbiota is dominated by around 40 species that maintain persistent populations over the duration of one year. The findings allow conclusions about the ecological factors that shape the community and support the concept of a homeostatic ecosystem controlled largely by deterministic processes. Our analysis of a three-member community revealed that methodological artifacts of OTU-based approaches complicate core calculations, and these limitations have to be considered in the interpretation of microbiome studies

Suppressing hydrogen evolution by aqueous silicon powder dispersions through the introduction of an additional cathodic reaction

Silicon powder reacts with water, liberating hydrogen gas, which poses an explosion risk. Adding metal ions with a high reduction potential suppresses hydrogen generation. Copper (II) ions are particularly effective in this regard. In their presence the reaction features three distinct stages. In the initial phase copper is deposited on the silicon surface concomitant with a rapid drop in the solution pH. Most of the hydrogen evolves during a second active stage with the pH showing a slight upward drift. Finally, in the third stage, the silicon surface passivates and hydrogen evolution comes to a halt. A comparison of this method and two other methods previously reported, i.e., controlled air oxidation of the silicon powder before slurrying and adding organic corrosion inhibitors, shows that silane surface modification of silicon is the most effective method in terms of decreasing the greatest amount of hydrogen released and increasing silicon reactivity in a typical pyrotechnic composition.The THRIP programme of the Department of Trade and Industry and the National Research Foundation as well as AEL Mining Serviceshttp://www.tandfonline.com/loi/gcec20hb201

Suppressing H2 evolution by silicon powder dispersions

Silicon dispersions in water are used to produce pyrotechnic time delay compositions. The propensity of the silicon to react with water and to produce hazardous hydrogen gas must be suppressed. To this end, the effect of surface modifications and medium pH on the rate of corrosion of silicon was studied at ambient temperature. It was found that the rate of hydrogen evolution increased with increasing pH. Silanes proved to be more effective silicon corrosion inhibitors than alcohols, with vinyl tris (2-methoxyethoxy) silane producing the best results. Differential thermal analysis (DTA) studies were performed using a near-stoichiometric amount of lead chromate as oxidant. Comparable combustion behavior was observed when both the fuel and the oxidant powders were either uncoated or silane modified. Mixtures of neat oxidant with silane-coated silicon showed poor burn behavior and this was attributed to poor particle–particle mixing due to the mismatch in surface energies.The THRIP programme of the Department of Trade and Industry and the National Research Foundation as well as AELhttp://tandfonline.com/loi/uegm20ai201

Strange Stars with a Density-Dependent Bag Parameter

We have studied strange quark stars in the framework of the MIT bag model, allowing the bag parameter B to depend on the density of the medium. We have also studied the effect of Cooper pairing among quarks, on the stellar structure. Comparison of these two effects shows that the former is generally more significant. We studied the resulting equation of state of the quark matter, stellar mass-radius relation, mass-central-density relation, radius-central-density relation, and the variation of the density as a function of the distance from the centre of the star. We found that the density-dependent B allows stars with larger masses and radii, due to stiffening of the equation of state. Interestingly, certain stellar configurations are found to be possible only if B depends on the density. We have also studied the effect of variation of the superconducting gap parameter on our results.Comment: 23 pages, 8 figs; v2: 25 pages, 9 figs, version to be published in Phys. Rev. (D

Palaeoproterozoic magnesite: lithological and isotopic evidence for playa/sabkha environments

Magnesite forms a series of 1- to 15-m-thick beds within the approximate to2.0 Ga (Palaeoproterozoic) Tulomozerskaya Formation, NW Fennoscandian Shield, Russia. Drillcore material together with natural exposures reveal that the 680-m-thick formation is composed of a stromatolite-dolomite-'red bed' sequence formed in a complex combination of shallow-marine and non-marine, evaporitic environments. Dolomite-collapse breccia, stromatolitic and micritic dolostones and sparry allochemical dolostones are the principal rocks hosting the magnesite beds. All dolomite lithologies are marked by delta C-13 values from +7.1 parts per thousand to +11.6 parts per thousand (V-PDB) and delta O-18 ranging from 17.4 parts per thousand to 26.3 parts per thousand (V-SMOW). Magnesite occurs in different forms: finely laminated micritic; stromatolitic magnesite; and structureless micritic, crystalline and coarsely crystalline magnesite. All varieties exhibit anomalously high delta C-13 values ranging from +9.0 parts per thousand to +11.6 parts per thousand and delta O-18 values of 20.0-25.7 parts per thousand. Laminated and structureless micritic magnesite forms as a secondary phase replacing dolomite during early diagenesis, and replaced dolomite before the major phase of burial. Crystalline and coarsely crystalline magnesite replacing micritic magnesite formed late in the diagenetic/metamorphic history. Magnesite apparently precipitated from sea water-derived brine, diluted by meteoric fluids. Magnesitization was accomplished under evaporitic conditions (sabkha to playa lake environment) proposed to be similar to the Coorong or Lake Walyungup coastal playa magnesite. Magnesite and host dolostones formed in evaporative and partly restricted environments; consequently, extremely high delta C-13 values reflect a combined contribution from both global and local carbon reservoirs. A C- 13-rich global carbon reservoir (delta C-13 at around +5 parts per thousand) is related to the perturbation of the carbon cycle at 2.0 Ga, whereas the local enhancement in C-13 (up to +12 parts per thousand) is associated with evaporative and restricted environments with high bioproductivity

Nursing Home Residents and Enterobacteriaceae Resistant to Third-Generation Cephalosporins

Limited data identify the risk factors for infection with Enterobacteriaceae resistant to third-generation cephalosporins among residents of long-term-care facilities. Using a nested case-control study design, nursing home residents with clinical isolates of Enterobacteriaceae resistant to third-generation cephalosporins were compared to residents with isolates of Enterobacteriaceae susceptible to third-generation cephalosporins. Data were collected on antimicrobial drug exposure 10 weeks before detection of the isolates, facility-level demographics, hygiene facilities, and staffing levels. Logistic regression models were built to adjust for confounding variables. Twenty-seven case-residents were identified and compared to 85 controls. Exposure to any cephalosporin (adjusted odds ratio [OR] 4.0, 95% confidence interval [CI] 1.2 to13.6) and log percentage of residents using gastrostomy tubes within the nursing home (adjusted OR 3.9, 95% CI 1.3 to 12.0) were associated with having a clinical isolate resistant to third-generation cephalosporins

Physical Properties of Giant Molecular Clouds in the Large Magellanic Cloud

The Magellanic Mopra Assessment (MAGMA) is a high angular resolution CO mapping survey of giant molecular clouds (GMCs) in the Large and Small Magellanic Clouds using the Mopra Telescope. Here we report on the basic physical properties of 125 GMCs in the LMC that have been surveyed to date. The observed clouds exhibit scaling relations that are similar to those determined for Galactic GMCs, although LMC clouds have narrower linewidths and lower CO luminosities than Galactic clouds of a similar size. The average mass surface density of the LMC clouds is 50 Msol/pc2, approximately half that of GMCs in the inner Milky Way. We compare the properties of GMCs with and without signs of massive star formation, finding that non-star-forming GMCs have lower peak CO brightness than star-forming GMCs. We compare the properties of GMCs with estimates for local interstellar conditions: specifically, we investigate the HI column density, radiation field, stellar mass surface density and the external pressure. Very few cloud properties demonstrate a clear dependence on the environment; the exceptions are significant positive correlations between i) the HI column density and the GMC velocity dispersion, ii) the stellar mass surface density and the average peak CO brightness, and iii) the stellar mass surface density and the CO surface brightness. The molecular mass surface density of GMCs without signs of massive star formation shows no dependence on the local radiation field, which is inconsistent with the photoionization-regulated star formation theory proposed by McKee (1989). We find some evidence that the mass surface density of the MAGMA clouds increases with the interstellar pressure, as proposed by Elmegreen (1989), but the detailed predictions of this model are not fulfilled once estimates for the local radiation field, metallicity and GMC envelope mass are taken into account.Comment: 28 pages, 10 figures, accepted by MNRA

Communication Research

Contains reports on eight research projects

Immune-mediated mechanisms influencing the efficacy of anticancer therapies

Conventional anticancer therapies, such as chemotherapy, radiotherapy, and targeted therapy, are designed to kill cancer cells. However, the efficacy of anticancer therapies is not only determined by their direct effects on cancer cells but also by off-target effects within the host immune system. Cytotoxic treatment regimens elicit several changes in immune-related parameters including the composition, phenotype, and function of immune cells. Here we discuss the impact of innate and adaptive immune cells on the success of anticancer therapy. In this context we examine the opportunities to exploit host immune responses to boost tumor clearing, and highlight the challenges facing the treatment of advanced metastatic disease

Communication Research

Contains reports on eight research projects.Bell Telephone Laboratories, IncorporatedCarnegie FoundationRockefeller FoundationOffice of Naval Researc