5 research outputs found
Topological effects in the thermal properties of knotted polymer rings
- Author
- Publication venue
- 'IOP Publishing'
- Publication date
- 24/09/2012
- Field of study
The topological effects on the thermal properties of several knot
configurations are investigated using Monte Carlo simulations. In order to
check if the topology of the knots is preserved during the thermal fluctuations
we propose a method that allows very fast calculations and can be easily
applied to arbitrarily complex knots. As an application, the specific energy
and heat capacity of the trefoil, the figure-eight and the 81​ knots are
calculated at different temperatures and for different lengths. Short-range
repulsive interactions between the monomers are assumed. The knots
configurations are generated on a three-dimensional cubic lattice and sampled
by means of the Wang-Landau algorithm and of the pivot method. The obtained
results show that the topological effects play a key role for short-length
polymers. Three temperature regimes of the growth rate of the internal energy
of the system are distinguished.Comment: 7 pages, 12 figures, LaTeX + RevTeX. With respect to the first
version, in the second version the text has been improved and all figures are
now in black and whit
Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions
- Author
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Energy Functions for Knots: Beginning to Predict Physical Behavior
- Author
- AV Vologodski
- C Ernst
- D Kim
- EJJ Rensburg van
- EJJ Rensburg van
- FB Dean
- G Buck
- G Buck
- G Buck
- HA Lim
- HW Benjamin
- J Milnor
- J O’hara
- J O’hara
- J O’hara
- J O’hara
- JK Simon
- JPJ Michels
- JPJ Michels
- K Brakke
- K Millett
- K Moffatt
- M Freedman
- MC Tesi
- MC Tesi
- N Pippenger
- P Dröge
- P Dröge
- R Kanaar
- R Randell
- S Bryson
- S Fukuhara
- S Lomonaco
- S Spengler
- S Wasserman
- S Whittington
- SY Shaw
- SY Shaw
- T Deguchi
- VY Rybekov
- WS Sumners
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/1996
- Field of study
From a melt of rings to chromosome territories: the role of topological constraints in genome folding
- Author
- Alberts B
- Alexander Y Grosberg
- Benza V G
- de Gennes P-G
- de Gennes P-G
- des Cloizeaux J
- Doi M
- Emanuel M
- Everaers R
- Grosberg A Y
- Grosberg A Y
- Grosberg A Y
- Grosberg A Y
- Halverson J D
- Jan Smrek
- Jonathan D Halverson
- Kurt Kremer
- Lieberman-Aiden E
- Milo R
- Mirny L
- Nazarov L
- Nechaev S K
- Phillips R
- Rosa A
- Rubinstein M
- Rubinstein M
- Smrek J
- Vettorel T
- Vologodski A V
- Wolfe S L
- Publication venue
- 'IOP Publishing'
- Publication date
- Field of study
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- Ĺ olc
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- Štèpanek
- Štèpanek
- Štèpanek
- Publication venue
- 'Elsevier BV'
- Publication date
- 01/01/1999
- Field of study