Stratigraphy and sedimentology of distal-alluvial and lacustrine deposits of the western-central Ebro Basin (NE Iberia) reflecting the onset of the middle Miocene Climatic Optimum

Stratigraphic and sedimentological study of distal alluvial and lacustrine deposits in the Plana de la Negra-Sancho Abarca area (western-central Ebro Basin, NE Iberia) within the early and middle Miocene allows five main lithofacies to be characterized and mapped within two tectosedimentary units, construction of a sedimentary facies model and discussion on allogenic controls on sedimentation. In this area, the boundary between tectosedimentary units T5 and T6 appears to be conformable and is marked by the change from dominant clastics to carbonates. Correlation of the studied outcrops with nearby sections that already had magnetostratigraphic and biostratigraphic data allows the studied succession to be dated from C5Dr to C5Cn (Burdigalian-Langhian), placing the boundary T5/T6 at ca. 16.1-16.05Ma. Seven vertical facies sequences document deposition of distal alluvial clastics and palustrine and lacustrine carbonates. Sandstones and mudstones represent low-sinuosity channels and lateral and terminal splays by unconfined flows runnig across the alluvial plain, associated to the Pyrenean-derived Luna fluvial system. The carbonates contain charophytes, ostracods, bivalves and gastropods, indicating deposition in 2-4m deep lakes. Laminated carbonate facies record reworking of shore carbonates and the influx fine-siliciclastic sediment offshore. Abundant bioturbation and desiccation features indicate episodic submergence and subaerial exposure. Four main episodes of alluvial and associated palustrine/lacustrine facies belt shifts are identified. Alluvial deposition in the studied T5 unit is related to low lake level conditions, rather than to a Pyrenean uplift. The maximum extent of the freshwater carbonates occur at the base of unit T6. This is consistent with conditions of increasing humidity of the Middle Miocene Climatic Optimum

First bird footprints from the lower Miocene Lerín Formation, Ebro Basin, Spain

A new tracksite with bird footprints, found in the Bardenas Reales de Navarra Natural Park (Navarre, Spain), is presented in this study. The footprints are preserved in four sandstone blocks of the Lerín Formation from the northwest sector of the Ebro Basin. According to the magnetostratigraphic data, the age of these blocks is 20.4 Ma (Agenian, lower Miocene). The footprints are more than 100 mm in length, mesaxonic, and tridactyl, and have a prominent central pad impression with the digit impressions not jointed proximally. These features allow classifying them as Uvaichnites riojana. Some of the studied footprints are better preserved than the type series of Uvaichnites, which were found also in the northwest sector of the Ebro Basin. Therefore, the original diagnosis has been emended. Available chronostratigraphic data for these localities as well as for other footprints from China indicate a latest Oligocene-earliest Miocene age (from about 23 to 20 Ma) for Uvaichnites-like footprints. Sedimentological data also indicate similar continental environments, namely perilacustrine deltaic systems and distal alluvial systems. The information about early Miocene avian remains (bones, eggs and footprints) in the Iberian Peninsula is scarce. The skeletal and oological record of this age has been included within the families Phoenicopteridae, Phaisanidae and Cathartidae (or incertae sedis), while the ichnological record was related with trackmakers belonging to Charadriiformes, Ardeidae and Gruidae taxa. For this scenario, in which there are few avian remains, the ichnological diversity shown in this paper complements and improves the knowledge about the Iberian avian diversity in the early Miocene

Las asociaciones de ostrácodos en secuencias aluviales como indicadores de cambios ambientales holocenos (Bardenas Reales de Navarra, Cuenca del Ebro, NE Península Ibérica)

En este trabajo se estudian las asociaciones de ostrácodos identificadas en tres unidades aluviales preservadas en Bardenas Reales de Navarra (Cuenca del Ebro, NE Península Ibérica), para reconstruir la evolución paleoambiental de esta área durante el Holoceno final. Las especies de ostrácodos más comunes en las muestras estudiadas son Ilyocypris bradyi Sars y Paralimnocythere aff. psammophila (Flössner), acompañadas por Pseudocandona albicans (Brady). Las variaciones en su abundancia relativa a lo largo de dichas unidades aluviales permiten caracterizar cambios internos en el ambiente de depósito. Así, la unidad depositada entre 4763±87 y 2848±55 años cal. BP presenta como especie más abundante a I. bradyi, lo que indica la existencia de pequeños arroyos o riachuelos con agua corriente que se desarrollaron probablemente en llanuras de inundación fluviales. Sin embargo, de 2848±55 a 836±65 años cal. BP Paralimnocythere aff. psammophila es la especie dominante, representando el establecimiento de un medio acuático efímero y de aguas estancadas, posiblemente relacionado con condiciones climáticas más áridas (Anomalía Climática Medieval). Finalmente, la asociación de ostrácodos identificada en el Reciente (191±97 a 127±82 años cal. BP) está constituida principalmente por I. bradyi, que indicaría la presencia de nuevo de aguas corrientes. Esta última asociación parece estar vinculada a la influencia de condiciones climáticas húmedas y frías (Pequeña Edad del Hielo) durante el Reciente en esta área. Por lo tanto, la evolución paleoambiental para el Holoceno final de Bardenas Reales de Navarra, identificada a partir de las asociaciones de ostrácodos, muestra una buena correlación con los cambios climáticos rápidos holocenos deducidos en otros registros continentales del NE de la Península Ibérica. In this paper, the ostracod assemblages identified in three alluvial units preserved in Bardenas Reales de Navarra (Ebro Basin, NE Iberian Peninsula) have been studied, with the aim of reconstructing the palaeoenvironmental evolution of this area during the late Holocene. The most common ostracod species in the studied samples are Ilyocypris bradyi Sars and Paralimnocythere aff. psammophila (Flössner), accompanied by Pseudocandona albicans (Brady). Variations in their relative abundance along these alluvial units allow us to characterize internal changes in the depositional environment. Thus, the unit deposited between 4763±87 and 2848±55 years cal. BP is dominated by I. bradyi, indicating the presence of small streams with running water developed probably in fluvial flood plains. Nevertheless, from 2848±55 to 836±65 years cal. BP Paralimnocythere aff. psammophila is the dominant species, representing the establishment of an ephemeral and stagnant aquatic environment, mainly related with more arid climatic conditions (Medieval Warm Period). Finally, the ostracod assemblage identified in Recent times (191±97 to 127±82 years cal. BP) is mainly dominated by I. bradyi, which indicates the presence of running waters. This later assemblage probably defines the influence of cold and wet climatic phase (Little Ice Age) during Recent times in this area. The palaeoenvironmental evolution identified from the late Holocene according to ostracod assemblages in Bardenas Reales de Navarra shows good correlation with rapid climatic changes deduced from other continental records of the NE Iberian Peninsula

Análisis paleoambiental de los depósitos aluviales de la sección de Cenicero a partir de las asociaciones de ostrácodos (Mioceno inferior, NO de la Cuenca del Ebro)

In this work we perform for the first time a palaeoenvironmental and biostratigraphic analysis of the lower Miocene alluvial deposits of the Cenicero section (NW sector of the Ebro Basin; N Iberian Peninsula), based on the ostracod and micromammal assemblages. One of the main characteristics of this section is the unusual abundance on non-reworked ostracods present in the studied samples compared to other European sequences of similar age and sedimentary environment. This fact has allowed us to develop precise palaeoenvironmental reconstructions. The variations of the identified ostracod assemblages, defined by species such as Cyclocypris laevis, Ilyocypris bradyi, Ilyocypris gibba, Limnocythere sp. or Pseudocandona parallela, record the development of small, ephem-eral and shallow ponds in a distal alluvial and/or floodplain environment. Towards the upper part of the section the ponds appear to be less ephemeral, being the aquatic systems more stable for ostracods development. Variations in the water temperature and salinity have been observed along the section, which are related to changes in the local pluviometric regime. On the other hand, the presence of micromammals in one of the studied samples has allowed the precise dating of this section. Thus, the presence of Armantomys daamsi dates the Cenicero section as Agenian (lower Miocene), local zone Y2 (MN2).En este trabajo se realiza, por vez primera, un análisis paleoambiental y bioestratigráfico de los depósitos aluviales del Mioceno inferior de la sección de Cenicero (sector NO de la Cuenca del Ebro; N de la Península Ibérica), a partir de las asociaciones de ostrácodos y micromamíferos preservadas en estos materiales. Una de las principales características de esta sección es la inusual abundancia de ejemplares de ostrácodos no transportados, en comparación con otras secciones europeas de edad y ambiente sedimentario similares, lo que permite hacer inferencias paleoambientales precisas. La variación en las asociaciones de ostrácodos identificadas, defini-das por especies como Cyclocypris laevis, Ilyocypris bradyi, Ilyocypris gibba, Limnocythere sp. o Pseudocandona parallela, parece sugerir el desarrollo de pequeños cuerpos de agua dulce, someros y efímeros, enmarcados en un ambiente general aluvial distal y/o de llanura de inundación. Hacia techo de la sección, se registra una mayor permanencia temporal de estas acumulaciones y condiciones más estables y favorables del medio para el desarrollo de los ostrácodos. Así mismo, se observan variaciones en la temperatura y salinidad del agua a lo largo de la sección, que podrían estar relacionadas con cambios en el régimen pluviométrico local. La presencia de micromamíferos en uno de los niveles estudiados ha permitido obtener una datación precisa de la sección. Así, la aparición de Armantomys daamsi sitúa la sección de Cenicero dentro de la zona local Y2 (MN2) de edad Ageniense (Mioceno inferior)

The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild

Background The only known albino gorilla, named Snowflake, was a male wild born individual from Equatorial Guinea who lived at the Barcelona Zoo for almost 40 years. He was diagnosed with non-syndromic oculocutaneous albinism, i.e. white hair, light eyes, pink skin, photophobia and reduced visual acuity. Despite previous efforts to explain the genetic cause, this is still unknown. Here, we study the genetic cause of his albinism and making use of whole genome sequencing data we find a higher inbreeding coefficient compared to other gorillas. Results We successfully identified the causal genetic variant for Snowflake¿s albinism, a non-synonymous single nucleotide variant located in a transmembrane region of SLC45A2. This transporter is known to be involved in oculocutaneous albinism type 4 (OCA4) in humans. We provide experimental evidence that shows that this amino acid replacement alters the membrane spanning capability of this transmembrane region. Finally, we provide a comprehensive study of genome-wide patterns of autozygogosity revealing that Snowflake¿s parents were related, being this the first report of inbreeding in a wild born Western lowland gorilla. Conclusions In this study we demonstrate how the use of whole genome sequencing can be extended to link genotype and phenotype in non-model organisms and it can be a powerful tool in conservation genetics (e.g., inbreeding and genetic diversity) with the expected decrease in sequencing cost. Keywords: Gorilla; Albinism; Inbreeding; Genome; Conservatio

Measurement of the ratio of branching fractions BR(B0 -> K*0 gamma)/BR(Bs0 -> phi gamma)

The ratio of branching fractions of the radiative B decays B0 -> K*0 gamma and Bs0 -> phi gamma has been measured using 0.37 fb-1 of pp collisions at a centre of mass energy of sqrt(s) = 7 TeV, collected by the LHCb experiment. The value obtained is BR(B0 -> K*0 gamma)/BR(Bs0 -> phi gamma) = 1.12 +/- 0.08 ^{+0.06}_{-0.04} ^{+0.09}_{-0.08}, where the first uncertainty is statistical, the second systematic and the third is associated to the ratio of fragmentation fractions fs/fd. Using the world average for BR(B0 -> K*0 gamma) = (4.33 +/- 0.15) x 10^{-5}, the branching fraction BR(Bs0 -> phi gamma) is measured to be (3.9 +/- 0.5) x 10^{-5}, which is the most precise measurement to date.Comment: 15 pages, 1 figure, 2 table

Observation of J/ψpJ/\psi p resonances consistent with pentaquark states in Λb0→J/ψK−p{\Lambda_b^0\to J/\psi K^-p} decays

Observations of exotic structures in the $J/\psi p$ channel, that we refer to as pentaquark-charmonium states, in $\Lambda_b^0\to J/\psi K^- p$ decays are presented. The data sample corresponds to an integrated luminosity of 3/fb acquired with the LHCb detector from 7 and 8 TeV pp collisions. An amplitude analysis is performed on the three-body final-state that reproduces the two-body mass and angular distributions. To obtain a satisfactory fit of the structures seen in the $J/\psi p$ mass spectrum, it is necessary to include two Breit-Wigner amplitudes that each describe a resonant state. The significance of each of these resonances is more than 9 standard deviations. One has a mass of $4380\pm 8\pm 29$ MeV and a width of $205\pm 18\pm 86$ MeV, while the second is narrower, with a mass of $4449.8\pm 1.7\pm 2.5$ MeV and a width of $39\pm 5\pm 19$ MeV. The preferred $J^P$ assignments are of opposite parity, with one state having spin 3/2 and the other 5/2.Comment: 48 pages, 18 figures including the supplementary material, v2 after referee's comments, now 19 figure

Observation of the Bs0→J/ψϕϕB_s^0 \rightarrow J/\psi \phi \phi decay

The $B_s^0 \rightarrow J/\psi \phi \phi$ decay is observed in $pp$ collision data corresponding to an integrated luminosity of 3 fb$^{-1}$ recorded by the LHCb detector at centre-of-mass energies of 7 TeV and 8 TeV. This is the first observation of this decay channel, with a statistical significance of 15 standard deviations. The mass of the $B_s^0$ meson is measured to be $5367.08\,\pm \,0.38\,\pm\, 0.15$ MeV/c$^2$. The branching fraction ratio $\mathcal{B}(B_s^0 \rightarrow J/\psi \phi \phi)/\mathcal{B}(B_s^0 \rightarrow J/\psi \phi)$ is measured to be 0.0115\,\pm\, 0.0012\, ^{+0.0005}_{-0.0009}. In both cases, the first uncertainty is statistical and the second is systematic. No evidence for non-resonant $B_s^0 \rightarrow J/\psi \phi K^+ K^-$ or $B_s^0 \rightarrow J/\psi K^+ K^- K^+ K^-$ decays is found.Comment: All figures and tables, along with any supplementary material and additional information, are available at https://lhcbproject.web.cern.ch/lhcbproject/Publications/LHCbProjectPublic/LHCb-PAPER-2015-033.htm

Precise measurements of the properties of the B-1(5721)(0,+) and B-2*(5747)(0,+) states and observation of B-+,B-0 pi(-,+) mass structures

Invariant mass distributions of B+π− and B0π+ combinations are investigated in order to study excited B mesons. The analysis is based on a data sample corresponding to 3.0 fb−1 of pp collision data, recorded by the LHCb detector at centre-of-mass energies of 7 and 8 TeV. Precise measurements of the masses and widths of the B1(5721)0,+ and B2(5747)0,+ states are reported. Clear enhancements, particularly prominent at high pion transverse momentum, are seen over background in the mass range 5850-6000 MeV in both B+π− and B0π+ combinations. The structures are consistent with the presence of four excited B mesons, labelled BJ (5840)0,+ and BJ (5960)0,+, whose masses and widths are obtained under different hypotheses for their quantum numbers

Study of Bc+B_c^+ decays to the K+K−π+K^+K^-\pi^+ final state and evidence for the decay Bc+→χc0π+B_c^+\to\chi_{c0}\pi^+

A study of $B_c^+\to K^+K^-\pi^+$ decays is performed for the first time using data corresponding to an integrated luminosity of 3.0 $\mathrm{fb}^{-1}$ collected by the LHCb experiment in $pp$ collisions at centre-of-mass energies of $7$ and $8$ TeV. Evidence for the decay $B_c^+\to\chi_{c0}(\to K^+K^-)\pi^+$ is reported with a significance of 4.0 standard deviations, resulting in the measurement of $\frac{\sigma(B_c^+)}{\sigma(B^+)}\times\mathcal{B}(B_c^+\to\chi_{c0}\pi^+)$ to be $(9.8^{+3.4}_{-3.0}(\mathrm{stat})\pm 0.8(\mathrm{syst}))\times 10^{-6}$. Here $\mathcal{B}$ denotes a branching fraction while $\sigma(B_c^+)$ and $\sigma(B^+)$ are the production cross-sections for $B_c^+$ and $B^+$ mesons. An indication of $\bar b c$ weak annihilation is found for the region $m(K^-\pi^+)<1.834\mathrm{\,Ge\kern -0.1em V\!/}c^2$, with a significance of 2.4 standard deviations.Comment: All figures and tables, along with any supplementary material and additional information, are available at https://lhcbproject.web.cern.ch/lhcbproject/Publications/LHCbProjectPublic/LHCb-PAPER-2016-022.html, link to supplemental material inserted in the reference