Characteristics of colliding density currents: a numerical and theoretical study

This paper presents a new set of numerical simulations of two colliding density currents in a idealized framework, integrating the Boussinesq vorticity equation in a rectangular bounded domain. These simulations are used to examine the dynamical features of the collision, in the light of recent laboratory experiments. The collision dynamics present various interesting features. Here we have focused on the interface slope at the front of the two unequal density currents and on the maximum height reached by the fluid after the collision. For the secondary triggering of atmospheric convection by colliding cold pools from previous convective events, these may affect the positioning and the momentum of the collision uplift, respectively. The interface slope has been shown to be dependent on the currents’ buoyancy ratio (i.e. the ratio between the density differences of the two fluids with the ambient fluid) , whereas the maximum height has no strong dependence, for a given initial current depth. A theoretical model, based on an analogy with a vortex pair, has been proposed for the interface-slope dependence, taking as input the buoyancy ratio or the propagating speeds. This model agrees reasonably well with the observed numerical values

Coupling the 1-D lake model FLake to the community land-surface model JULES

Results are presented from the merging of the lake model FLake into the community land-surface model JULES. It is shown, by comparison with observational data, that the combined JULES-FLake model performs more realistically than JULES with its original or upgraded parametrizations for inland water. Tests against observations from lakes in the UK and Sweden show that JULES-FLake gives results for both midlatitude and arctic lakes which are comparable to the original lake model, FLake. The accuracy of JULES-FLake as a general model of the land surface is therefore enhanced. Differences in sign of the model errors in the prediction of lake-ice thickness indicate possible future directions for development and testing of these models

Comparing diagnosed observation uncertainties with independent estimates: a case study using aircraft‐based observations and a convection‐permitting data assimilation system

Aircraft can report in situ observations of the ambient temperature by using aircraft meteorological data relay (AMDAR) or these can be derived using mode‐select enhanced tracking data (Mode‐S EHS). These observations may be assimilated into numerical weather prediction models to improve the initial conditions for forecasts. The assimilation process weights the observation according to the expected uncertainty in its measurement and representation. The goal of this paper is to compare observation uncertainties diagnosed from data assimilation statistics with independent estimates. To quantify these independent estimates, we use metrological comparisons, made with in‐situ research‐grade instruments, as well as previous studies using collocation methods between aircraft (mostly AMDAR reports) and other observing systems such as radiosondes. In this study, we diagnose a new estimate of the vertical structure of the uncertainty variances using observation‐minus‐background and observation‐minus‐analysis statistics from a Met Office limited area three‐dimensional variational data assimilation system (3 km horizontal grid‐length, 3‐hourly cycle). This approach for uncertainty estimation is simple to compute but has several limitations. Nevertheless, the resulting diagnosed variances have a vertical structure that is like that provided by the independent estimates of uncertainty. This provides confidence in the uncertainty estimation method, and in the diagnosed uncertainty estimates themselves. In the future, our methodology, along with other results, could provide ways to estimate the uncertainty for the assimilation of aircraft‐based temperature observations

Distributed urban drag parameterization for sub‐kilometre scale numerical weather prediction

A recently developed, height-distributed urban drag parameterization is tested with the London Model, a sub-kilometre resolution version of the Met Office Unified Model over Greater London. The distributed drag parameterization requires vertical morphology profiles in form of height-distributed frontal area functions, which capture the full extent and variability of building heights. London’s morphology profiles are calculated and parameterised by an exponential distribution with the ratio of maximum to mean building height as parameter. A case study evaluates the differences between the new distributed drag scheme and the current London Model set-up using the MORUSES urban land-surface model. The new drag parameterization shows increased horizontal spatial variability in total surface stress, identifying densely built-up areas, high-rise building clusters, parks and the river. Effects on the wind speed in the lower levels include a lesser gradient and more heterogeneous wind profiles, extended wakes downwind of the city centre, and vertically growing perturbations that suggest the formation of internal boundary layers. The surface sensible heat fluxes are under-predicted, which is attributed to difficulties coupling the distributed momentum exchange with the surface-based heat exchange

The performance of FLake in the Met Office Unified Model

We present results from the coupling of FLake to the Met Office Unified Model (MetUM). The coupling and initialisation are first described, and the results of testing the coupled model in local and global model configurations are presented. These show that FLake has a small statistical impact on screen temperature, but has the potential to modify the weather in the vicinity of areas of significant inland water. Examination of FLake lake ice has revealed that the behaviour of lakes in the coupled model is unrealistic in some areas of significant sub-grid orography. Tests of various modifications to ameliorate this behaviour are presented. The results indicate which of the possible model changes best improve the annual cycle of lake ice. As FLake has been developed and tuned entirely outside the Unified Model system, these results can be interpreted as a useful objective measure of the performance of the Unified Model in terms of its near-surface characteristics

Comparison of aircraft-derived observations with in situ research aircraft measurements

Mode Selective Enhanced Surveillance (Mode-S EHS) reports are aircraft-based observations that have value in numerical weather prediction (NWP). These reports contain the aircraft's state vector in terms of its speed, direction, altitude and Mach number. Using the state vector, meteorological observations of temperature and horizontal wind can be derived. However, Mode-S EHS processing reduces the precision of the state vector from 16-bit to 10-bit binary representation. We use full precision data from research grade instruments, on-board the United Kingdom's Facility for Atmospheric Airborne Measurements, to emulate Mode-S EHS reports and to compare with derived observations. We aim to understand the observation errors due to the reduced precision of Mode-S EHS reports. We derive error models to estimate these observation errors. The temperature error increases from 1.25 K to 2.5 K between an altitude of 10 km and the surface due to its dependency on Mach number and also Mode-S EHS precision. For the cases studied, the zonal wind error is around 0.50 ms− 1 and the meridional wind error is 0.25 ms− 1. The wind is also subject to systematic errors that are directionally dependent. We conclude that Mode-S EHS derived horizontal winds are suitable for data assimilation in high-resolution NWP. Temperature reports may be usable when aggregated from multiple aircraft. While these reduced precision, high frequency data provide useful, albeit noisy, observations; direct reports of the higher precision data would be preferable

Mortality and pulmonary complications in patients undergoing surgery with perioperative SARS-CoV-2 infection: an international cohort study

Background: The impact of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on postoperative recovery needs to be understood to inform clinical decision making during and after the COVID-19 pandemic. This study reports 30-day mortality and pulmonary complication rates in patients with perioperative SARS-CoV-2 infection. Methods: This international, multicentre, cohort study at 235 hospitals in 24 countries included all patients undergoing surgery who had SARS-CoV-2 infection confirmed within 7 days before or 30 days after surgery. The primary outcome measure was 30-day postoperative mortality and was assessed in all enrolled patients. The main secondary outcome measure was pulmonary complications, defined as pneumonia, acute respiratory distress syndrome, or unexpected postoperative ventilation. Findings: This analysis includes 1128 patients who had surgery between Jan 1 and March 31, 2020, of whom 835 (74·0%) had emergency surgery and 280 (24·8%) had elective surgery. SARS-CoV-2 infection was confirmed preoperatively in 294 (26·1%) patients. 30-day mortality was 23·8% (268 of 1128). Pulmonary complications occurred in 577 (51·2%) of 1128 patients; 30-day mortality in these patients was 38·0% (219 of 577), accounting for 81·7% (219 of 268) of all deaths. In adjusted analyses, 30-day mortality was associated with male sex (odds ratio 1·75 [95% CI 1·28–2·40], p\textless0·0001), age 70 years or older versus younger than 70 years (2·30 [1·65–3·22], p\textless0·0001), American Society of Anesthesiologists grades 3–5 versus grades 1–2 (2·35 [1·57–3·53], p\textless0·0001), malignant versus benign or obstetric diagnosis (1·55 [1·01–2·39], p=0·046), emergency versus elective surgery (1·67 [1·06–2·63], p=0·026), and major versus minor surgery (1·52 [1·01–2·31], p=0·047). Interpretation: Postoperative pulmonary complications occur in half of patients with perioperative SARS-CoV-2 infection and are associated with high mortality. Thresholds for surgery during the COVID-19 pandemic should be higher than during normal practice, particularly in men aged 70 years and older. Consideration should be given for postponing non-urgent procedures and promoting non-operative treatment to delay or avoid the need for surgery. Funding: National Institute for Health Research (NIHR), Association of Coloproctology of Great Britain and Ireland, Bowel and Cancer Research, Bowel Disease Research Foundation, Association of Upper Gastrointestinal Surgeons, British Association of Surgical Oncology, British Gynaecological Cancer Society, European Society of Coloproctology, NIHR Academy, Sarcoma UK, Vascular Society for Great Britain and Ireland, and Yorkshire Cancer Research

Association of HLA-DRB1 amino acid residues with giant cell arteritis: genetic association study, meta-analysis and geo-epidemiological investigation

Introduction: Giant cell arteritis (GCA) is an autoimmune disease commonest in Northern Europe and Scandinavia. Previous studies report various associations with HLA-DRB1*04 and HLA-DRB1*01; HLA-DRB1 alleles show a gradient in population prevalence within Europe. Our aims were (1) to determine which amino acid residues within HLA-DRB1 best explained HLA-DRB1 allele susceptibility and protective effects in GCA, seen in UK data combined in meta-analysis with previously published data, and (2) to determine whether the incidence of GCA in different countries is associated with the population prevalence of the HLA-DRB1 alleles that we identified in our meta-analysis. Methods: GCA patients from the UK GCA Consortium were genotyped by using single-strand oligonucleotide polymerization, allele-specific polymerase chain reaction, and direct sequencing. Meta-analysis was used to compare and combine our results with published data, and public databases were used to identify amino acid residues that may explain observed susceptibility/protective effects. Finally, we determined the relationship of HLA-DRB1*04 population carrier frequency and latitude to GCA incidence reported in different countries. Results: In our UK data (225 cases and 1378 controls), HLA-DRB1*04 carriage was associated with GCA susceptibility (odds ratio (OR) = 2.69, P = 1.5×10 −11 ), but HLA-DRB1*01 was protective (adjusted OR = 0.55, P = 0.0046). In meta-analysis combined with 14 published studies (an additional 691 cases and 4038 controls), protective effects were seen from HLA-DR2, which comprises HLA-DRB1*15 and HLA-DRB1*16 (OR = 0.65, P = 8.2×10 −6 ) and possibly from HLA-DRB1*01 (OR = 0.73, P = 0.037). GCA incidence (n = 17 countries) was associated with population HLA-DRB1*04 allele frequency (P = 0.008; adjusted R 2 = 0.51 on univariable analysis, adjusted R 2 = 0.62 after also including latitude); latitude also made an independent contribution. Conclusions: We confirm that HLA-DRB1*04 is a GCA susceptibility allele. The susceptibility data are best explained by amino acid risk residues V, H, and H at positions 11, 13, and 33, contrary to previous suggestions of amino acids in the second hypervariable region. Worldwide, GCA incidence was independently associated both with population frequency of HLA-DRB1*04 and with latitude itself. We conclude that variation in population HLA-DRB1*04 frequency may partly explain variations in GCA incidence and that HLA-DRB1*04 may warrant investigation as a potential prognostic or predictive biomarker

Sustained increases in atmospheric oxygen and marine productivity in the Neoproterozoic and Palaeozoic eras

A geologically rapid Neoproterozoic oxygenation event is commonly linked to the appearance of marine animal groups in the fossil record. However, there is still debate about what evidence from the sedimentary geochemical record—if any—provides strong support for a persistent shift in surface oxygen immediately preceding the rise of animals. We present statistical learning analyses of a large dataset of geochemical data and associated geological context from the Neoproterozoic and Palaeozoic sedimentary record and then use Earth system modelling to link trends in redox-sensitive trace metal and organic carbon concentrations to the oxygenation of Earth’s oceans and atmosphere. We do not find evidence for the wholesale oxygenation of Earth’s oceans in the late Neoproterozoic era. We do, however, reconstruct a moderate long-term increase in atmospheric oxygen and marine productivity. These changes to the Earth system would have increased dissolved oxygen and food supply in shallow-water habitats during the broad interval of geologic time in which the major animal groups first radiated. This approach provides some of the most direct evidence for potential physiological drivers of the Cambrian radiation, while highlighting the importance of later Palaeozoic oxygenation in the evolution of the modern Earth system