Impacts of extreme environmental disturbances on piping plover survival are partially moderated by migratory connectivity

Effective conservation for listed migratory species requires an understanding of how drivers of population decline vary spatially and temporally, as well as knowledge of range-wide connectivity between breeding and nonbreeding areas. Environmental conditions distant from breeding areas can have lasting effects on the demography of migratory species, yet these consequences are often the least understood. Our objectives were to 1) evaluate associations between survival and extreme environmental disturbances at nonbreeding areas, including hurricanes, harmful algal blooms, and oil spills, and 2) estimate migratory connectivity between breeding and nonbreeding areas of midcontinental piping plovers (Charadrius melodus). We used capture and resighting data from 5067 individuals collected between 2002 and 2019 from breeding areas across the midcontinent, and nonbreeding areas throughout the Gulf of Mexico and southern Atlantic coasts of North America. We developed a hidden Markov multistate model to estimate seasonal survival and account for unobservable geographic locations. Hurricanes and harmful algal blooms were negatively associated with nonbreeding season survival, but we did not detect a similarly negative relationship with oil spills. Our results indicated that individuals from separate breeding areas mixed across nonbreeding areas with low migratory connectivity. Mixing among individuals in the nonbreeding season may provide a buffering effect against impacts of extreme events on any one breeding region. Our results suggest that understanding migratory connectivity and linking seasonal threats to population dynamics can better inform conservation strategies for migratory shorebirds

A variant in LIN28B is associated with 2D:4D finger-length ratio, a putative retrospective biomarker of prenatal testosterone exposure

The ratio of the lengths of an individual's second to fourth digit (2D:4D) is commonly used as a noninvasive retrospective biomarker for prenatal androgen exposure. In order to identify the genetic determinants of 2D:4D, we applied a genome-wide association approach to 1507 11-year-old children from the Avon Longitudinal Study of Parents and Children (ALSPAC) in whom 2D:4D ratio had been measured, as well as a sample of 1382 12- to 16-year-olds from the Brisbane Adolescent Twin Study. A meta-analysis of the two scans identified a single variant in the LIN28B gene that was strongly associated with 2D:4D (rs314277: p = 4.1 108) and was subsequently independently replicated in an additional 3659 children from the ALSPAC cohort (p = 1.53 106). The minor allele of the rs314277 variant has previously been linked to increased height and delayed age at menarche, but in our study it was associated with increased 2D:4D in the direction opposite to that of previous reports on the correlation between 2D:4D and age at menarche. Our findings call into question the validity of 2D:4D as a simplistic retrospective biomarker for prenatal testosterone exposure

Detection of mammaglobin mRNA in peripheral blood is associated with high grade breast cancer: Interim results of a prospective cohort study

<p>Abstract</p> <p>Background</p> <p>We sought to examine the detection rate of cancer cells in peripheral blood (PBL) and in bone marrow (BM) using an established 7-gene marker panel and evaluated whether there were any definable associations of any individual gene with traditional predictors of prognosis.</p> <p>Methods</p> <p>Patients with T1-T3 primary breast cancer were enrolled into a prospective, multi-institutional cohort study. In this interim analysis 215 PBL and 177 BM samples were analyzed by multimarker, real-time RT-PCR analysis designed to detect circulating and disseminated breast cancer cells.</p> <p>Results</p> <p>At a threshold of three standard deviations from the mean expression level of normal controls, 63% (136/215) of PBL and 11% (19/177) of BM samples were positive for at least one cancer-associated marker. Marker positivity in PBL demonstrated a statistically significant association with grade II-III (vs. grade I; p = 0.0083). Overexpression of the mammaglobin (<it>mam</it>) gene alone had a statistically significant association with high tumor grade (p = 0.0315), and showed a trend towards ER-negative tumors and a high risk category. There was no association between marker positivity in PBL and the pathologic (H&E) and/or molecular (RT-PCR) status of the axillary lymph nodes (ALN).</p> <p>Conclusion</p> <p>This study suggests that molecular detection of circulating cancer cells in PBL detected by RT-PCR is associated with high tumor grade and specifically that overexpression of the <it>mam </it>gene in PBL may be a poor prognostic indicator. There was no statistically significant association between overexpression of cancer-associated genes in PBL and ALN status, supporting the concept of two potentially separate metastatic pathways.</p

New genetic loci link adipose and insulin biology to body fat distribution.

Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our understanding of the genetic basis of body fat distribution and its molecular links to cardiometabolic traits, here we conduct genome-wide association meta-analyses of traits related to waist and hip circumferences in up to 224,459 individuals. We identify 49 loci (33 new) associated with waist-to-hip ratio adjusted for body mass index (BMI), and an additional 19 loci newly associated with related waist and hip circumference measures (P < 5 × 10(-8)). In total, 20 of the 49 waist-to-hip ratio adjusted for BMI loci show significant sexual dimorphism, 19 of which display a stronger effect in women. The identified loci were enriched for genes expressed in adipose tissue and for putative regulatory elements in adipocytes. Pathway analyses implicated adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution, providing insight into potential pathophysiological mechanisms

Asymmetric benefits of a heterospecific breeding association vary with habitat, conspecific abundance and breeding stage

Heterospecific breeding associations may benefit individuals by mitigating predation risk but may also create costs if they increase competition for resources or are more easily detectable by predators. Our understanding of the interactions among hetero- and conspecifics is often lacking in mixed species colonies. Here, we test how the presence of hetero- and conspecifics influence nest and chick survival for two listed (under the U.S. Endangered Species Act) migratory species breeding on the Missouri River, USA. We monitored 2507 piping plover Charadrius melodus nests and 3245 chicks as well as 1060 least tern Sternula antillarum nests and 1374 chicks on Lake Sakakawea, the Garrison River Reach and the Gavins Point Reach for varying years between 2007 and 2016. Piping plover nest and chick survival improved with the presence and abundance of least terns, but least terns only benefited from piping plover presence for certain study areas and breeding stages. Piping plover nest survival was also improved by the presence and abundance of conspecifics on the Garrison River Reach and was negatively influenced by conspecific presence on Lake Sakakawea. Least tern chick survival improved with the presence of other least terns only on the Gavins Point Reach. Ultimately, the heterospecific breeding association between plovers and terns is mutualistic but asymmetric and is moderated by habitat, abundance of conspecifics and breeding stage. Our results highlight that spatiotemporal variation in the interactions among individuals breeding in groups precludes simple generalizations and suggests that management focused on one species may restrict benefits to that focal species if nest site requirements for heterospecifics are not also included. Includes Supplementary Appendi

Conspecific density and habitat quality affect breeding habitat selection: Support for the social attraction hypothesis

Abstract Breeding habitat selection is a critical component of the annual cycle because of its effect on fitness. Multiple theories of habitat selection can be differentiated by their responses to the quantity of habitat, conspecific density, and habitat quality. Here, we use network analysis to understand the characteristics of fine‐scale breeding habitat selected by both immigrant and returning adult piping plovers (Charadrius melodus) to test five hypotheses of habitat selection. Between 2014 and 2019, we recorded 2034 uniquely marked adults breeding at 326 breeding locations with 1240 successive breeding events. Among adults, immigration events (i.e., individuals that moved to a new breeding location) were detected as often as fidelity to the same breeding location. We found support for the social attraction hypothesis for both immigrants and returners, indicating that adult plovers use social cues for settlement decisions. Adult plovers selected habitats with intermediate levels of conspecific density and high habitat quality, as assessed by con‐ and heterospecific nest survival, with no effect from the amount of available habitat. We also simulated the loss of breeding habitat and identified highly connected breeding locations, which occurred mostly on the riverine habitat type, which have important implications for habitat conservation for this listed species. Our results highlight the role of conspecifics at identifying high‐quality breeding habitat regardless of whether individuals return to the same breeding site or immigrate to new areas

Implications of habitat‐driven survival and dispersal on recruitment in a spatially structured piping plover population

Abstract Natal survival and dispersal have important consequences for populations through the movement of genes and individuals. Metapopulation theory predicts either balanced natal dispersal among regions or source–sink dynamics, which can dramatically change population structure. For species reliant on dynamic, early‐successional habitats, availability and location of habitat will shift from year to year, requiring primiparous individuals to locate an appropriate breeding habitat. We estimated hatch‐year survival to adulthood and natal dispersal rates between two breeding groups of Northern Great Plains piping plovers (Charadrius melodus) from four cohorts (n = 2669 total individuals; 2014–2017). Hatch‐year survival to adulthood was slightly higher for individuals hatched on the Missouri River than on the US Alkali Wetlands but declined over time. Individuals hatched on the US Alkali Wetlands were more likely to disperse to breed on the Missouri River (0.33 [0.20, 0.48]) than vice versa (0.17 [0.11, 0.24]). When more habitat was available at the natal site than in the prior year, natal dispersal rates increased. However, despite higher recruitment rates as a result of higher natal fidelity, the Missouri River showed lower total recruitment with a declining trend in the number of recruits, largely due to differences in abundance between breeding groups. Overall, unbalanced, high natal dispersal rates within the Northern Great Plains indicate high connectivity among distinct regions with different water regimes on the Missouri River and on the US Alkali Wetlands driven by fluctuating availability of habitat. Our results suggest that plovers in the Northern Great Plains take advantage of dynamic habitats where they are available in a broad geographic area, which is consistent with a spatially structured panmictic population rather than a true metapopulation, but further research on adult breeding dispersal is needed to clarify population structure

Interferons and viruses induce a novel primate-specific isoform dACE2 and not the SARS-CoV-2 receptor ACE2

https://kent-islandora.s3.us-east-2.amazonaws.com/node/10691/83863-thumbnail.jpgSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes COVID-19, utilizes angiotensin-converting enzyme 2 (ACE2) for entry into target cells. ACE2 has been proposed as an interferon-stimulated gene (ISG). Thus, interferon-induced variability in ACE2 expression levels could be important for susceptibility to COVID-19 or its outcomes. Here, we report the discovery of a novel, transcriptionally independent truncated isoform of ACE2, which we designate as deltaACE2 (dACE2). We demonstrate that dACE2, but not ACE2, is an ISG. In The Cancer Genome Atlas, the expression of dACE2 was enriched in squamous tumors of the respiratory, gastrointestinal and urogenital tracts. In vitro, dACE2, which lacks 356 amino-terminal amino acids, was non-functional in binding the SARS-CoV-2 spike protein and as a carboxypeptidase. Our results suggest that the ISG-type induction of dACE2 in IFN-high conditions created by treatments, an inflammatory tumor microenvironment or viral co-infections is unlikely to increase the cellular entry of SARS-CoV-2 and promote infection. &nbsp; Preprint available here on biorxiv:&nbsp;https://doi.org/10.1101/2020.07.19.210955</p

Radiocarbon re-dating of contact-era Iroquoian history in northeastern North America

A time frame for late Iroquoian prehistory is firmly established on the basis of the presence/absence of European trade goods and other archeological indicators. However, independent dating evidence is lacking. We use 86 radiocarbon measurements to test and (re)define existing chronological understanding. Warminster, often associated with Cahiagué visited by S. de Champlain in 1615–1616 CE, yields a compatible radiocarbon-based age. However, a well-known late prehistoric site sequence in southern Ontario, Draper-Spang-Mantle, usually dated ~1450–1550, yields much later radiocarbon-based dates of ~1530–1615. The revised time frame dramatically rewrites 16th-century contact-era history in this region. Key processes of violent conflict, community coalescence, and the introduction of European goods all happened much later and more rapidly than previously assumed. Our results suggest the need to reconsider current understandings of contact-era dynamics across northeastern North America.© 2018 The Author