IMOS national reference stations: A continental-wide physical, chemical and biological coastal observing system

Sustained observations allow for the tracking of change in oceanography and ecosystems, however, these are rare, particularly for the Southern Hemisphere. To address this in part, the Australian Integrated Marine Observing System (IMOS) implemented a network of nine National Reference Stations (NRS). The network builds on one long-term location, where monthly water sampling has been sustained since the 1940s and two others that commenced in the 1950s. In-situ continuously moored sensors and an enhanced monthly water sampling regime now collect more than 50 data streams. Building on sampling for temperature, salinity and nutrients, the network now observes dissolved oxygen, carbon, turbidity, currents, chlorophyll a and both phytoplankton and zooplankton. Additional parameters for studies of ocean acidification and bio-optics are collected at a sub-set of sites and all data is made freely and publically available. Our preliminary results demonstrate increased utility to observe extreme events, such as marine heat waves and coastal flooding; rare events, such as plankton blooms; and have, for the first time, allowed for consistent continental scale sampling and analysis of coastal zooplankton and phytoplankton communities. Independent water sampling allows for cross validation of the deployed sensors for quality control of data that now continuously tracks daily, seasonal and annual variation. The NRS will provide multi-decadal time series, against which more spatially replicated short-term studies can be referenced, models and remote sensing products validated, and improvements made to our understanding of how large-scale, long-term change and variability in the global ocean are affecting Australia's coastal seas and ecosystems. The NRS network provides an example of how a continental scaled observing systems can be developed to collect observations that integrate across physics, chemistry and biology

Mortality and pulmonary complications in patients undergoing surgery with perioperative SARS-CoV-2 infection: an international cohort study

Background: The impact of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) on postoperative recovery needs to be understood to inform clinical decision making during and after the COVID-19 pandemic. This study reports 30-day mortality and pulmonary complication rates in patients with perioperative SARS-CoV-2 infection. Methods: This international, multicentre, cohort study at 235 hospitals in 24 countries included all patients undergoing surgery who had SARS-CoV-2 infection confirmed within 7 days before or 30 days after surgery. The primary outcome measure was 30-day postoperative mortality and was assessed in all enrolled patients. The main secondary outcome measure was pulmonary complications, defined as pneumonia, acute respiratory distress syndrome, or unexpected postoperative ventilation. Findings: This analysis includes 1128 patients who had surgery between Jan 1 and March 31, 2020, of whom 835 (74·0%) had emergency surgery and 280 (24·8%) had elective surgery. SARS-CoV-2 infection was confirmed preoperatively in 294 (26·1%) patients. 30-day mortality was 23·8% (268 of 1128). Pulmonary complications occurred in 577 (51·2%) of 1128 patients; 30-day mortality in these patients was 38·0% (219 of 577), accounting for 81·7% (219 of 268) of all deaths. In adjusted analyses, 30-day mortality was associated with male sex (odds ratio 1·75 [95% CI 1·28–2·40], p\textless0·0001), age 70 years or older versus younger than 70 years (2·30 [1·65–3·22], p\textless0·0001), American Society of Anesthesiologists grades 3–5 versus grades 1–2 (2·35 [1·57–3·53], p\textless0·0001), malignant versus benign or obstetric diagnosis (1·55 [1·01–2·39], p=0·046), emergency versus elective surgery (1·67 [1·06–2·63], p=0·026), and major versus minor surgery (1·52 [1·01–2·31], p=0·047). Interpretation: Postoperative pulmonary complications occur in half of patients with perioperative SARS-CoV-2 infection and are associated with high mortality. Thresholds for surgery during the COVID-19 pandemic should be higher than during normal practice, particularly in men aged 70 years and older. Consideration should be given for postponing non-urgent procedures and promoting non-operative treatment to delay or avoid the need for surgery. Funding: National Institute for Health Research (NIHR), Association of Coloproctology of Great Britain and Ireland, Bowel and Cancer Research, Bowel Disease Research Foundation, Association of Upper Gastrointestinal Surgeons, British Association of Surgical Oncology, British Gynaecological Cancer Society, European Society of Coloproctology, NIHR Academy, Sarcoma UK, Vascular Society for Great Britain and Ireland, and Yorkshire Cancer Research

Assessment of geoid models offshore Western Australia using in-situ measurements

In Western Australia, coastal dynamics are influenced by a major ocean boundary current system, the Leeuwin Current, which is characterised by mesoscale features. To fully understand the Leeuwin Current using satellite altimeter measurements, we must have a precise (1–2 cm) and full-spatial-scale (<100 km) geoid model. This paper focuses on a comparison between two mean dynamic ocean topography models derived from independent hydrographic climatologies, and an altimeter-observed mean sea surface referenced to recently released geoid models offshore of Western Australia (20°S to 45°S, 108°E to 130°E). The geoid models used include combined global geopotential models from the GRACE satellite mission and AUSGeoid98. The estimated mean dynamic ocean topography models are compared with independent dynamic ocean topography from CSIRO's Atlas of Regional Seas (CARS) climatology. The results show that the EIGEN_GL04C and GGM02C + EGM96 global geopotential models to degree and order 360 give the best comparisons against CARS in the Leeuwin Current region, suggesting that they should be used in the future for computing ocean transport, surface current velocities, and dynamic topography, and be used as a reference field for future computations of regional marine geoid models

A search for the Tasman Front

The traditional view of the circulation in the Tasman Sea includes a coherent, quasi-zonal, eastward flow towards the northern tip of New Zealand that is widely referred to as the Tasman Front. This flow was first suggested in the 1960s by oceanographers reasoning that the source of volume transport “feeding” the East Auckland Current, around northern New Zealand and extending down the east coast, must be off eastern Australia. The first reported in situ measurements of the Tasman Front included hand-drawn temperature sections that highlighted features that are not supported by observations. Here, we objectively map the original data, showing that the published reports of strong, sub-surface, north-south temperature gradients were unjustified. In the absence of additional observations, we can’t be sure of the context of those original measurements - so we have objectively “searched” fields in a recent 25-year ocean reanalysis to identify scenarios that are consistent with the observations. We suggest that the most likely interpretation of the original data, is that they measured an eddy field - or a series of discontinuous streams across the central Tasman Sea. We also analyse data from surface drifting buoys to show that water traversing the Tasman Sea may take several different paths. We conclude that a continuous, zonal, eastward flow across the Tasman Sea is less common than widely-accepted conceptual models imply. Instead, we suggest that the eastward flow between Australia and northern New Zealand is perhaps better described as an “eastern extension of the EAC” - since this doesn’t imply the presence of a front, and doesn’t preclude a broad flow. For clarity, we also suggest that the southern branch of the EAC, known as the EAC extension, should be referred to as the “southern extension of the EAC”.Data was sourced from the Integrated Marine Observing System (IMOS, www.aodn.org.au). IMOS is a national collaborative research infrastructure, supported by the Australian Government. Satellite altimeter data is provided by NASA, ESA, ISRO, NOAA, and CNES. SST observations are provided by NOAA (www.nodc.noaa.gov) and Remote Sensing Systems (www.remss.com). Model data used in this study are from the Bluelink suite of global models (http://dapds00.nci.org.au/ thredds/catalog/gb6/BRAN/catalog.html) and from the Consortium for Ocean-Sea Ice Modelling in Australia (COSIMA; http://cosima.org.au). COSIMA is supported by the Australian Research Council Linkage grant LP160100073. Model runs used resources and services from the National Computational Infrastructure (NCI), which is supported by the Australian Government. We obtained the SCOW dataset from http:// cioss.coas.oregonstate.edu/scow/. We acknowledge support from the Australian Research Council Centre of Excellence for Climate Extremes (CE170100023

Primary productivity induced by iron and nitrogen in the Tasman Sea: An overview of the PINTS expedition

The Tasman Sea and the adjacent subantarctic zone (SAZ) are economically important regions, where the parameters controlling the phytoplankton community composition and carbon fixation are not yet fully resolved. Contrasting nutrient distributions, as well as phytoplankton biomass, biodiversity and productivity were observed between the North Tasman Sea and the SAZ. In situ photosynthetic efficiency (FV/FM), dissolved and particulate nutrients, iron biological uptake, and nitrogen and carbon fixation were used to determine the factor-limiting phytoplankton growth and productivity in the North Tasman Sea and the SAZ. Highly productive cyanobacteria dominated the North Tasman Sea. High atmospheric nitrogen fixation and low nitrate dissolved concentrations indicated that non-diazotroph phytoplankton are nitrogen limited. Deck-board incubations also suggested that, at depth, iron could limit eukaryotes, but not cyanobacteria in that region. In the SAZ, the phytoplankton community was dominated by a bloom of haptophytes. The low productivity in the SAZ was mainly explained by light limitation, but nitrogen, silicic acid as well as iron were all depleted to the extent that they could become co-limiting. This study illustrates the challenge associated with identification of the limiting nutrient, as it varied between phytoplankton groups, depths and sites

Climate change cascades: Shifts in oceanography, species' ranges and subtidal marine community dynamics in eastern Tasmania

Several lines of evidence show that ocean warming off the east coast of Tasmania is the result of intensification of the East Australian Current (EAC). Increases in the strength, duration and frequency of southward incursions of warm, nutrient poor EAC water transports heat and biota to eastern Tasmania. This shift in large-scale oceanography is reflected by changes in the structure of nearshore zooplankton communities and other elements of the pelagic system; by a regional decline in the extent of dense beds of giant kelp (Macrocystis pyrifera); by marked changes in the distribution of nearshore fishes; and by range expansions of other northern warmer-water species to colonize Tasmanian coastal waters. Population-level changes in commercially important invertebrate species may also be associated with the warming trend