Selective Optical Control of Synaptic Transmission in the Subcortical Visual Pathway by Activation of Viral Vector-Expressed Halorhodopsin

The superficial layer of the superior colliculus (sSC) receives visual inputs via two different pathways: from the retina and the primary visual cortex. However, the functional significance of each input for the operation of the sSC circuit remains to be identified. As a first step toward understanding the functional role of each of these inputs, we developed an optogenetic method to specifically suppress the synaptic transmission in the retino-tectal pathway. We introduced enhanced halorhodopsin (eNpHR), a yellow light-sensitive, membrane-targeting chloride pump, into mouse retinal ganglion cells (RGCs) by intravitreously injecting an adeno-associated virus serotype-2 vector carrying the CMV-eNpHR-EYFP construct. Several weeks after the injection, whole-cell recordings made from sSC neurons in slice preparations revealed that yellow laser illumination of the eNpHR-expressing retino-tectal axons, putatively synapsing onto the recorded cells, effectively inhibited EPSCs evoked by electrical stimulation of the optic nerve layer. We also showed that sSC spike activities elicited by visual stimulation were significantly reduced by laser illumination of the sSC in anesthetized mice. These results indicate that photo-activation of eNpHR expressed in RGC axons enables selective blockade of retino-tectal synaptic transmission. The method established here can most likely be applied to a variety of brain regions for studying the function of individual inputs to these regions

The Optokinetic Reflex as a Tool for Quantitative Analyses of Nervous System Function in Mice: Application to Genetic and Drug-Induced Variation

The optokinetic reflex (OKR), which serves to stabilize a moving image on the retina, is a behavioral response that has many favorable attributes as a test of CNS function. The OKR requires no training, assesses the function of diverse CNS circuits, can be induced repeatedly with minimal fatigue or adaptation, and produces an electronic record that is readily and objectively quantifiable

Data Descriptor: A global multiproxy database for temperature reconstructions of the Common Era

Reproducible climate reconstructions of the Common Era (1 CE to present) are key to placing industrial-era warming into the context of natural climatic variability. Here we present a community-sourced database of temperature-sensitive proxy records from the PAGES2k initiative. The database gathers 692 records from 648 locations, including all continental regions and major ocean basins. The records are from trees, ice, sediment, corals, speleothems, documentary evidence, and other archives. They range in length from 50 to 2000 years, with a median of 547 years, while temporal resolution ranges from biweekly to centennial. Nearly half of the proxy time series are significantly correlated with HadCRUT4.2 surface temperature over the period 1850-2014. Global temperature composites show a remarkable degree of coherence between high-and low-resolution archives, with broadly similar patterns across archive types, terrestrial versus marine locations, and screening criteria. The database is suited to investigations of global and regional temperature variability over the Common Era, and is shared in the Linked Paleo Data (LiPD) format, including serializations in Matlab, R and Python.(TABLE)Since the pioneering work of D'Arrigo and Jacoby1-3, as well as Mann et al. 4,5, temperature reconstructions of the Common Era have become a key component of climate assessments6-9. Such reconstructions depend strongly on the composition of the underlying network of climate proxies10, and it is therefore critical for the climate community to have access to a community-vetted, quality-controlled database of temperature-sensitive records stored in a self-describing format. The Past Global Changes (PAGES) 2k consortium, a self-organized, international group of experts, recently assembled such a database, and used it to reconstruct surface temperature over continental-scale regions11 (hereafter, ` PAGES2k-2013').This data descriptor presents version 2.0.0 of the PAGES2k proxy temperature database (Data Citation 1). It augments the PAGES2k-2013 collection of terrestrial records with marine records assembled by the Ocean2k working group at centennial12 and annual13 time scales. In addition to these previously published data compilations, this version includes substantially more records, extensive new metadata, and validation. Furthermore, the selection criteria for records included in this version are applied more uniformly and transparently across regions, resulting in a more cohesive data product.This data descriptor describes the contents of the database, the criteria for inclusion, and quantifies the relation of each record with instrumental temperature. In addition, the paleotemperature time series are summarized as composites to highlight the most salient decadal-to centennial-scale behaviour of the dataset and check mutual consistency between paleoclimate archives. We provide extensive Matlab code to probe the database-processing, filtering and aggregating it in various ways to investigate temperature variability over the Common Era. The unique approach to data stewardship and code-sharing employed here is designed to enable an unprecedented scale of investigation of the temperature history of the Common Era, by the scientific community and citizen-scientists alike

The opto-locomotor reflex as a tool to measure sensitivity to moving random dot patterns in mice

Contains fulltext : 191668.pdf (publisher's version ) (Open Access

Seychelles coral record of changes in sea surface temperature bimodality in the western Indian Ocean from the Mid-Holocene to the present

We report fossil coral records from the Seychelles comprising individual time slices of 14–20 sclerochronological years between 2 and 6.2 kyr BP to reconstruct changes in the seasonal cycle of western Indian Ocean sea surface temperature (SST) compared to the present (1990–2003). These reconstructions allowed us to link changes in the SST bimodality to orbital changes, which were causing a reorganization of the seasonal insolation pattern. Our results reveal the lowest seasonal SST range in the Mid-Holocene (6.2–5.2 kyr BP) and around 2 kyr BP, while the highest range is observed around 4.6 kyr BP and between 1990 and 2003. The season of maximum temperature shifts from austral spring (September to November) to austral autumn (March to May), following changes in seasonal insolation over the past 6 kyr. However, the changes in SST bimodality do not linearly follow the insolation seasonality. For example, the 5.2 and 6.2 kyr BP corals show only subtle SST differences in austral spring and autumn. We use paleoclimate simulations of a fully coupled atmosphere–ocean general circulation model to compare with proxy data for the Mid-Holocene around 6 kyr BP. The model results show that in the Mid-Holocene the austral winter and spring seasons in the western Indian Ocean were warmer while austral summer was cooler. This is qualitatively consistent with the coral data from 6.2 to 5.2 kyr BP, which shows a similar reduction in the seasonal amplitude compared to the present day. However, the pattern of the seasonal SST cycle in the model appears to follow the changes in insolation more directly than indicated by the corals. Our results highlight the importance of ocean–atmosphere interactions for Indian Ocean SST seasonality throughout the Holocene. In order to understand Holocene climate variability in the countries surrounding the Indian Ocean, we need a much more comprehensive analysis of seasonally resolved archives from the tropical Indian Ocean. Insolation data alone only provides an incomplete picture