Invariant Variation Problems

The problems in variation here concerned are such as to admit a continuous group (in Lie's sense); the conclusions that emerge from the corresponding differential equations find their most general expression in the theorems formulated in Section 1 and proved in following sections. Concerning these differential equations that arise from problems of variation, far more precise statements can be made than about arbitrary differential equations admitting of a group, which are the subject of Lie's researches. What is to follow, therefore, represents a combination of the methods of the formal calculus of variations with those of Lie's group theory. For special groups and problems in variation, this combination of methods is not new; I may cite Hamel and Herglotz for special finite groups, Lorentz and his pupils (for instance Fokker), Weyl and Klein for special infinite groups. Especially Klein's second Note and the present developments have been mutually influenced by each other, in which regard I may refer to the concluding remarks of Klein's Note.Comment: M. A. Tavel's English translation of Noether's Theorems (1918), reproduced by Frank Y. Wang. Thanks to Lloyd Kannenberg for corrigend

Poisoning by non-edible squash: retrospective series of 353 patients from French Poison Control Centers

CONTEXT: Among the numerous varieties of squash that exist, some are edible while other bitter-tasting ones are not fit for human consumption. Cases of confusion seem to be multiplying and are characterized by digestive problems (diarrhea, vomiting, and abdominal pain). METHODS: This is a descriptive retrospective study of cases of exposure reported to French Poison Control Centers between 1 January 2012 and 12 December 2016. RESULTS: 353 patients were included, with 71.7% belonging to collective cases of poisoning. The male to female sex ratio was 0.75 for an average age of 38.2 ± 23.6 years. The circumstances of exposure were dietary for 337 patients (95.5%). The majority of the squash consumed was purchased at a store (55.8%) but some also came from the garden (25.5%). 204 patients (57.8%) mostly presented with diarrhea, vomiting, abdominal pain, sometimes with the consequent dehydration, hypotension, tachycardia, headaches, or vertigo. There were no deaths or severe (Poisoning Severity Score (PSS) 3) cases, but there were 14 patients (4.0%) of moderate severity, 190 patients (53.8%) of minor severity (PSS 1), and 149 patients (42.2%) without severity (PSS 0) but among which we include the bitter taste of the squash. The average age of PSS 2 patients was significantly (p = .003) older than that of the PSS <2 patients. CONCLUSION: As the first consequential series in Europe, our study shows that exposure to non-edible squash is frequent. Usually benign, poisoning could be the consequence of the irritating effect of certain cucurbits, the molecules responsible for the taste and toxicity of the fruits. In terms of prevention therefore, we recommend disposing of any squash with a bitter taste

The XMM-Newton Wide-Field Survey in the COSMOS field (XMM-COSMOS): demography and multiwavelength properties of obscured and unobscured luminous AGN

We report the final optical identifications of the medium-depth (~60 ksec), contiguous (2 deg^2) XMM-Newton survey of the COSMOS field. XMM-Newton has detected ~800 X-ray sources down to limiting fluxes of ~5x10^{-16}, ~3x10^{-15}, and ~7x10^{-15} erg/cm2/s in the 0.5-2 keV, 2-10 keV and 5-10 keV bands, respectively. The work is complemented by an extensive collection of multi-wavelength data from 24 micron to UV, available from the COSMOS survey, for each of the X-ray sources, including spectroscopic redshifts for ~50% of the sample, and high-quality photometric redshifts for the rest. The XMM and multiwavelength flux limits are well matched: 1760 (98%) of the X-ray sources have optical counterparts, 1711 (~95%) have IRAC counterparts, and 1394 (~78%) have MIPS 24micron detections. Thanks to the redshift completeness (almost 100%) we were able to constrain the high-luminosity tail of the X-ray luminosity function confirming that the peak of the number density of logL_X>44.5 AGN is at z~2. Spectroscopically-identified obscured and unobscured AGN, as well as normal and starforming galaxies, present well-defined optical and infrared properties. We devised a robust method to identify a sample of ~150 high redshift (z>1), obscured AGN candidates for which optical spectroscopy is not available. We were able to determine that the fraction of the obscured AGN population at the highest (L_X>10^{44} erg s^{-1}) X-ray luminosity is ~15-30% when selection effects are taken into account, providing an important observational constraint for X-ray background synthesis. We studied in detail the optical spectrum and the overall spectral energy distribution of a prototypical Type 2 QSO, caught in a stage transitioning from being starburst dominated to AGN dominated, which was possible to isolate only thanks to the combination of X-ray and infrared observations.Comment: ApJ, in press. 59 pages, 14 figures, 2 Tables. A few typos corrected and a reference added. Table 2 is also available at http://www.mpe.mpg.de/XMMCosmos/xmm53_release ; a version of the paper in ApJ format (27 pages) is available at http://www.mpe.mpg.de/XMMCosmos/xmm53_release/brusa_xmmcosmos_optid.pd

Precision photometric redshift calibration for galaxy-galaxy weak lensing

Accurate photometric redshifts are among the key requirements for precision weak lensing measurements. Both the large size of the Sloan Digital Sky Survey (SDSS) and the existence of large spectroscopic redshift samples that are flux-limited beyond its depth have made it the optimal data source for developing methods to properly calibrate photometric redshifts for lensing. Here, we focus on galaxy-galaxy lensing in a survey with spectroscopic lens redshifts, as in the SDSS. We develop statistics that quantify the effect of source redshift errors on the lensing calibration and on the weighting scheme, and show how they can be used in the presence of redshift failure and sampling variance. We then demonstrate their use with 2838 source galaxies with spectroscopy from DEEP2 and zCOSMOS, evaluating several public photometric redshift algorithms, in two cases including a full p(z) for each object, and find lensing calibration biases as low as <1 per cent (due to fortuitous cancellation of two types of bias) or as high as 20 per cent for methods in active use (despite the small mean photoz bias of these algorithms). Our work demonstrates that lensing-specific statistics must be used to reliably calibrate the lensing signal, due to asymmetric effects of (frequently non-Gaussian) photoz errors. We also demonstrate that large-scale structure (LSS) can strongly impact the photoz calibration and its error estimation, due to a correlation between the LSS and the photoz errors, and argue that at least two independent degree-scale spectroscopic samples are needed to suppress its effects. Given the size of our spectroscopic sample, we can reduce the galaxy-galaxy lensing calibration error well below current SDSS statistical error

The close environment of 24 micron galaxies at 0.6<z<1.0 in the COSMOS field

We investigate the close environment of 203 Spitzer 24 micron-selected sources at 0.6<z<1.0 using zCOSMOS-bright redshifts and spectra of I<22.5 AB mag galaxies, over 1.5 sq. deg. of the COSMOS field. We quantify the degree of passivity of the LIRG and ULIRG environments by analysing the fraction of close neighbours with Dn(4000)>1.4. We find that LIRGs at 0.6<z<0.8 live in more passive environments than those of other optical galaxies that have the same stellar mass distribution. Instead, ULIRGs inhabit more active regions (e.g. LIRGs and ULIRGs at 0.6<z<0.8 have, respectively, (42.0 +/- 4.9)% and (24.5 +/- 5.9)% of neighbours with Dn (4000)>1.4 within 1 Mpc and +/- 500 km/s). The contrast between the activities of the close environments of LIRGs and ULIRGs appears especially enhanced in the COSMOS field density peak at z~0.67, because LIRGs on this peak have a larger fraction of passive neighbours, while ULIRGs have as active close environments as those outside the large-scale structure. The differential environmental activity is related to the differences in the distributions of stellar mass ratios between LIRGs/ULIRGs and their close neighbours, as well as in the general local density fields. At 0.8<z<1.0, instead, we find no differences in the environment densities of ULIRGs and other similarly massive galaxies, in spite of the differential activities. We discuss a possible scenario to explain these findings.Comment: ApJ, in press. 9 pages, including 5 figure

Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns

<p>Abstract</p> <p>Background</p> <p>Regulation of gene expression plays a pivotal role in cellular functions. However, understanding the dynamics of transcription remains a challenging task. A host of computational approaches have been developed to identify regulatory motifs, mainly based on the recognition of DNA sequences for transcription factor binding sites. Recent integration of additional data from genomic analyses or phylogenetic footprinting has significantly improved these methods.</p> <p>Results</p> <p>Here, we propose a different approach based on the compilation of Simple Shared Motifs (SSM), groups of sequences defined by their length and similarity and present in conserved sequences of gene promoters. We developed an original algorithm to search and count SSM in pairs of genes. An exceptional number of SSM is considered as a common regulatory pattern. The SSM approach is applied to a sample set of genes and validated using functional gene-set enrichment analyses. We demonstrate that the SSM approach selects genes that are over-represented in specific biological categories (Ontology and Pathways) and are enriched in co-expressed genes. Finally we show that genes co-expressed in the same tissue or involved in the same biological pathway have increased SSM values.</p> <p>Conclusions</p> <p>Using unbiased clustering of genes, Simple Shared Motifs analysis constitutes an original contribution to provide a clearer definition of expression networks.</p

The ER luminal binding protein (BiP) mediates an increase in drought tolerance in soybean and delays drought-induced leaf senescence in soybean and tobacco

The ER-resident molecular chaperone BiP (binding protein) was overexpressed in soybean. When plants growing in soil were exposed to drought (by reducing or completely withholding watering) the wild-type lines showed a large decrease in leaf water potential and leaf wilting, but the leaves in the transgenic lines did not wilt and exhibited only a small decrease in water potential. During exposure to drought the stomata of the transgenic lines did not close as much as in the wild type, and the rates of photosynthesis and transpiration became less inhibited than in the wild type. These parameters of drought resistance in the BiP overexpressing lines were not associated with a higher level of the osmolytes proline, sucrose, and glucose. It was also not associated with the typical drought-induced increase in root dry weight. Rather, at the end of the drought period, the BiP overexpressing lines had a lower level of the osmolytes and root weight than the wild type. The mRNA abundance of several typical drought-induced genes [NAC2, a seed maturation protein (SMP), a glutathione-S-transferase (GST), antiquitin, and protein disulphide isomerase 3 (PDI-3)] increased in the drought-stressed wild-type plants. Compared with the wild type, the increase in mRNA abundance of these genes was less (in some genes much less) in the BiP overexpressing lines that were exposed to drought. The effect of drought on leaf senescence was investigated in soybean and tobacco. It had previously been reported that tobacco BiP overexpression or repression reduced or accentuated the effects of drought. BiP overexpressing tobacco and soybean showed delayed leaf senescence during drought. BiP antisense tobacco plants, conversely, showed advanced leaf senescence. It is concluded that BiP overexpression confers resistance to drought, through an as yet unknown mechanism that is related to ER functioning. The delay in leaf senescence by BiP overexpression might relate to the absence of the response to drought

Overexpression of the Endoplasmic Reticulum Chaperone BiP3 Regulates XA21-Mediated Innate Immunity in Rice

Recognition of pathogen-associated molecular patterns by pattern recognition receptors (PRRs) activates the innate immune response. Although PRR-mediated signaling events are critical to the survival of plants and animals, secretion and localization of PRRs have not yet been clearly elucidated. Here we report the in vivo interaction of the endoplasmic reticulum (ER) chaperone BiP3 with the rice XA21 PRR, which confers resistance to the Gram negative bacterium, Xanthomonas oryzae pv. oryzae (Xoo). We show that XA21 is glycosylated and is primarily localized to the ER and also to the plasma membrane (PM). In BiP3-overexpressing rice plants, XA21-mediated immunity is compromised, XA21 stability is significantly decreased, and XA21 proteolytic cleavage is inhibited. BiP3 overexpression does not affect the general rice defense response, cell death or brassinolide-induced responses. These results indicate that BiP3 regulates XA21 protein stability and processing and that this regulation is critical for resistance to Xoo

Finite element pressure stabilizations for incompressible flow problems

Discretizations of incompressible flow problems with pairs of finite element spaces that do not satisfy a discrete inf-sup condition require a so-called pressure stabilization. This paper gives an overview and systematic assessment of stabilized methods, including the respective error analysis