Parity Violating Measurements of Neutron Densities

Parity violating electron nucleus scattering is a clean and powerful tool for measuring the spatial distributions of neutrons in nuclei with unprecedented accuracy. Parity violation arises from the interference of electromagnetic and weak neutral amplitudes, and the $Z^0$ of the Standard Model couples primarily to neutrons at low $Q^2$. The data can be interpreted with as much confidence as electromagnetic scattering. After briefly reviewing the present theoretical and experimental knowledge of neutron densities, we discuss possible parity violation measurements, their theoretical interpretation, and applications. The experiments are feasible at existing facilities. We show that theoretical corrections are either small or well understood, which makes the interpretation clean. The quantitative relationship to atomic parity nonconservation observables is examined, and we show that the electron scattering asymmetries can be directly applied to atomic PNC because the observables have approximately the same dependence on nuclear shape.Comment: 38 pages, 7 ps figures, very minor changes, submitted to Phys. Rev.

Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus

This is the final version of the article. It was first available from PLOS via http://dx.doi.org/10.1371/journal.pone.0144846All dLGN cell co-ordinates, V1 injection sites, dLGN boundary coordinates, experimental protocols and analysis scripts are available for download from figshare at https://figshare.com/s/36c6d937b1844eec80a1.The mouse dorsal lateral geniculate nucleus (dLGN) is an intermediary between retina and primary visual cortex (V1). Recent investigations are beginning to reveal regional complexity in mouse dLGN. Using local injections of retrograde tracers into V1 of adult and neonatal mice, we examined the developing organisation of geniculate projection columns: the population of dLGN-V1 projection neurons that converge in cortex. Serial sectioning of the dLGN enabled the distribution of labelled projection neurons to be reconstructed and collated within a common standardised space. This enabled us to determine: the organisation of cells within the dLGN-V1 projection columns; their internal organisation (topology); and their order relative to V1 (topography). Here, we report parameters of projection columns that are highly variable in young animals and refined in the adult, exhibiting profiles consistent with shell and core zones of the dLGN. Additionally, such profiles are disrupted in adult animals with reduced correlated spontaneous activity during development. Assessing the variability between groups with partial least squares regression suggests that 4?6 cryptic lamina may exist along the length of the projection column. Our findings further spotlight the diversity of the mouse dLGN?an increasingly important model system for understanding the pre-cortical organisation and processing of visual information. Furthermore, our approach of using standardised spaces and pooling information across many animals will enhance future functional studies of the dLGN.Funding was provided by a Wellcome Trust grant jointly awarded to IDT and SJE (083205, www.wellcome.ac.uk), and by MRC PhD Studentships awarded to MNL and ACH (http://www.mrc.ac.uk/)

A revision of Cyanonectria and Geejayessia gen. nov., and related species with Fusarium-like anamorphs

A revision of Fusarium-like species associated with the plant genus Buxus led to a reconsideration of generic concepts in the Fusarium clade of the Nectriaceae. Phylogenetic analyses of the partial second largest subunit of the RNA polymerase II (rpb2) and the larger subunit of the ATP citrate lyase (acl1) gene exons confirm the existence of a clade, here called the terminal Fusarium clade, that includes genera such as Fusarium sensu stricto (including its Gibberella teleomorphs), Albonectria, Cyanonectria, “Haematonectria”, the newly described genus Geejayessia, and “Nectria” albida. Geejayessia accommodates five species. Four were previously classified in Nectria sensu lato, namely the black perithecial, KOH–species G. atrofusca and the orange or reddish, KOH+ G. cicatricum, G. desmazieri and G. zealandica. Geejayessia celtidicola is newly described. Following our phylogenetic analyses showing its close relationship with Cyanonectria cyanostoma, the former Gibbera buxi is recombined as the second species of Cyanonectria. A three gene phylogenetic analysis of multiple strains of each morphological species using translation elongation factor 1 α (tef-1), rpb2 and acl1 gene exons and introns confirms their status as distinct phylogenetic species. Internal transcribed spacer of the ribosomal RNA gene cluster and nuclear large ribosomal subunit sequences were generated as additional DNA barcodes for selected strains. The connection of Fusarium buxicola, often erroneously reported as the anamorph of G. desmazieri, with the bluish black and KOH+ perithecial species C. buxi is reinstated. Most Cyanonectria and Geejayessia species exhibit restricted host ranges on branches or twigs of Buxus species, Celtis occidentalis, or Staphylea trifolia. Their perithecia form caespitose clusters on well-developed, mostly erumpent stromata on the bark or outer cortex of the host and are relatively thin-walled, mostly smooth, and therefore reminiscent of the more or less astromatous, singly occurring perithecia of Cosmospora, Dialonectria, and Microcera. The cell walls in outer- and inner layers of the perithecial walls of Cyanonectria and Geejayessia have inconspicuous pore-like structures, as do representative species of Albonectria, Fusarium sensu stricto, “Haematonectria”, and “Nectria” albida. The taxonomic significance of these structures, which we call Samuels' pores, is discussed

An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella

A comprehensive phylogenetic reassessment of the ascomycete genus Cosmospora (Hypocreales, Nectriaceae) is undertaken using fresh isolates and historical strains, sequences of two protein encoding genes, the second largest subunit of RNA polymerase II (rpb2), and a new phylogenetic marker, the larger subunit of ATP citrate lyase (acl1). The result is an extensive revision of taxonomic concepts, typification, and nomenclatural details of many anamorph- and teleomorph-typified genera of the Nectriaceae, most notably Cosmospora and Fusarium. The combined phylogenetic analysis shows that the present concept of Fusarium is not monophyletic and that the genus divides into two large groups, one basal in the family, the other terminal, separated by a large group of species classified in genera such as Calonectria, Neonectria, and Volutella. All accepted genera received high statistical support in the phylogenetic analyses. Preliminary polythetic morphological descriptions are presented for each genus, providing details of perithecia, micro- and/or macro-conidial synanamorphs, cultural characters, and ecological traits. Eight species are included in our restricted concept of Cosmospora, two of which have previously documented teleomorphs and all of which have Acremonium-like microconidial anamorphs. A key is provided to the three anamorphic species recognised in Atractium, which is removed from synonymy with Fusarium and epitypified for two macroconidial synnematous species and one sporodochial species associated with waterlogged wood. Dialonectria is recognised as distinct from Cosmospora and two species with teleomorph, macroconidia and microconidia are accepted, including the new species D. ullevolea. Seven species, one with a known teleomorph, are classified in Fusicolla, formerly considered a synonym of Fusarium including members of the F. aquaeductuum and F. merismoides species complex, with several former varieties raised to species rank. Originally a section of Nectria, Macroconia is raised to generic rank for five species, all producing a teleomorph and macroconidial anamorph. A new species of the Verticillium-like anamorphic genus Mariannaea is described as M. samuelsii. Microcera is recognised as distinct from Fusarium and a key is included for four macroconidial species, that are usually parasites of scale insects, two of them with teleomorphs. The four accepted species of Stylonectria each produce a teleomorph and micro- and macroconidial synanamorphs. The Volutella species sampled fall into three clades. Pseudonectria is accepted for a perithecial and sporodochial species that occurs on Buxus. Volutella s. str. also includes perithecial and/or sporodochial species and is revised to include a synnematous species formerly included in Stilbella. The third Volutella-like clade remains unnamed. All fungi in this paper are named using a single name system that gives priority to the oldest generic names and species epithets, irrespective of whether they are originally based on anamorph or teleomorph structures. The rationale behind this is discussed

Reviews and syntheses: A framework to observe, understand, and project ecosystem response to environmental change in the East Antarctic Southern Ocean

Systematic long-term studies on ecosystem dynamics are largely lacking for the East Antarctic Southern Ocean, although it is well recognized that such investigations are indispensable to identify the ecological impacts and risks of environmental change. Therefore, here we develop a framework for establishing a long-term cross-disciplinary study and argue why the eastern Weddell Sea and the easterly adjacent sea off Dronning Maud Land (WSoDML) is a well suited area for such an initiative. As in the Eastern Antarctic in general, climate and environmental change have so far been comparatively muted in this area. A systematic long-term study of its environmental and ecological state can thus provide a baseline of the current situation, an assessment of future changes, and sound data can act as a model to develop and calibrate projections. Establishing a long-term observation (LTO) and long-term ecological research (LTER) programme now would allow the study of climate-driven ecosystem changes and interactions with impacts arising from other anthropogenic activities, from their very onset. Through regular autonomous and ship-based LTO activities, changes in ocean dynamics, geochemistry, biodiversity and ecosystem functions and services can be systematically explored and mapped. This observational work should be accompanied by targeted LTER efforts, including experimental and modelling studies. This approach will provide a level of long-term data availability and ecosystem understanding that are imperative to determine, understand, and project the consequences of climate change and support a sound science-informed management of future conservation efforts in the Southern Ocean

Distinct germline genetic susceptibility profiles identified for common non-Hodgkin lymphoma subtypes

Lymphoma risk is elevated for relatives with common non-Hodgkin lymphoma (NHL) subtypes, suggesting shared genetic susceptibility across subtypes. To evaluate the extent of mutual heritability among NHL subtypes and discover novel loci shared among subtypes, we analyzed data from eight genome-wide association studies within the InterLymph Consortium, including 10,629 cases and 9505 controls. We utilized Association analysis based on SubSETs (ASSET) to discover loci for subsets of NHL subtypes and evaluated shared heritability across the genome using Genome-wide Complex Trait Analysis (GCTA) and polygenic risk scores. We discovered 17 genome-wide significant loci (P < 5 × 10−8) for subsets of NHL subtypes, including a novel locus at 10q23.33 (HHEX) (P = 3.27 × 10−9). Most subset associations were driven primarily by only one subtype. Genome-wide genetic correlations between pairs of subtypes varied broadly from 0.20 to 0.86, suggesting substantial heterogeneity in the extent of shared heritability among subtypes. Polygenic risk score analyses of established loci for different lymphoid malignancies identified strong associations with some NHL subtypes (P < 5 × 10−8), but weak or null associations with others. Although our analyses suggest partially shared heritability and biological pathways, they reveal substantial heterogeneity among NHL subtypes with each having its own distinct germline genetic architecture

Search for CPCP violation in the phase space of D0→π+π−π+π−D^0\rightarrow\pi^+\pi^-\pi^+\pi^- decays

A search for time-integrated $CP$ violation in the Cabibbo-suppressed decay \mbox{D^0\rightarrow\pi^+\pi^-\pi^+\pi^-} is performed using an unbinned, model-independent technique known as the energy test. This is the first application of the energy test in four-body decays. The search is performed for $P$-even $CP$ asymmetries and, for the first time, is extended to probe the $P$-odd case. Using proton-proton collision data corresponding to an integrated luminosity of 3.0 fb$^{-1}$ collected by the LHCb detector at centre-of-mass energies of $\sqrt{s}=$7 TeV and 8 TeV, the world's best sensitivity to $CP$ violation in this decay is obtained. The data are found to be consistent with the hypothesis of $CP$ symmetry with a $p$-value of $(4.6\pm0.5)\%$ in the $P$-even case, and marginally consistent with a $p$-value of $(0.6\pm0.2)\%$ in the $P$-odd case, corresponding to a significance for $CP$ non-conservation of 2.7 standard deviations.Comment: All figures and tables, along with any supplementary material and additional information, are available at https://lhcbproject.web.cern.ch/lhcbproject/Publications/LHCbProjectPublic/LHCb-PAPER-2016-044.htm

Development of absolute intensity multi-angle light scattering for the determination of polydisperse soot aggregate properties

This work investigates the capability of multi-angle light scattering to determine polydisperse aggregate parameters including the size distribution and the fractal dimension. The investigation considers one laser wavelength in the visible at 527 nm and a fixed angle range from 10\uc2\ub0 to 160\uc2\ub0. The corresponding range of the scattering wave vector limits the measured section of the overall structure factor significantly and makes an unambiguous determination of the size distribution parameters using relative multi-angle scatter intensities difficult. An interplay of the distribution width parameter and the fractal dimension is significant and impairs the possibilities for determining both properties simultaneously. The ambiguity of solutions can be overcome by including the absolute scattering intensity which is obtained via comparison with a known Rayleigh scatterer. However, additional parameters like the primary particle diameter, the soot volume fraction, the fractal prefactor, and the scattering function of the refractive index F(m) must be known with sufficient accuracy. We show how the analysis can be applied to a variety of soot sources ranging from very small aggregates in premixed flames, over intermediate aggregates in a laminar diffusion flame to large cooled soot emitted from a diffusion flame in inverted geometry.Peer reviewed: YesNRC publication: Ye

Measurement of soot morphology by integrated LII and elastic light scattering

A compact experimental setup that integrates laser-induced incandescence (LII) and one-angle elastic light scattering (1A-ELS) to measure the size of polydisperse soot aggregates is described. A 532 nm laser and a detection angle of 35 degrees were employed, which provided sensitivity for aggregate radius of gyrations (R g) of R g 200 nm. Both lognormal and self-preserving distribution functions are compared with width parameters derived from both aggregation theory and transmission electron microscopy (TEM) measurements. Using these distributions, mean aggregate sizes derived from the scattering measurements are compared. The LII+1A-ELS technique is validated with a two-angle elastic light scattering (2A-ELS) approach with an additional detection angle at 145 deg. Unlike LII+1A-ELS, the 2A-ELS technique has the advantage of not requiring knowledge of soot optical properties. Good agreement is found between the two techniques for a given distribution. A fundamental discrepancy exists between distributions derived from TEM and those according to aggregation theory, limiting the accuracy of both 2A-ELS and LII+1A-ELS. The dependence of both techniques on laser fluence and hence soot temperature is examined and discussed. \ua9 2011 Her Majesty the Queen in Right of Canada.Peer reviewed: YesNRC publication: Ye