Pre-clearing vegetation of the coastal lowlands of the Wet Tropics Bioregion, North Queensland

A pre-clearing vegetation map and digital coverage at approximately 1:50 000 scale for the coastal lowlands (up to about 200 m elevation) of the Wet Tropics Bioregion, North Queensland is presented. The study area covers about 508 000 ha from Cooktown, 420 km south almost to Townsville (latitude 15° 30’–18° 20’ longitude 144° 50’–146° 40’). Data sources included historical aerial photography, early surveyors’ plans, explorers’ journals, previous vegetation maps, and maps of soils and geology. The pre-clearing mapping was built around the remnant vegetation mapping of Stanton & Stanton (2005), and the vegetation classification of this latter work was adopted. Vegetation units were further classified into regional ecosystems compatible with the standard State-wide system used by Queensland government. The digital coverage is part of the current Queensland Herbarium regional ecosystem coverage (Queensland Herbarium and Wet Tropics Management Authority 2005). Coloured maps (1:100 000 scale) of the pre-clearing vegetation of the Herbert, Tully, Innisfail and Macalister/Daintree subregions are on an accompanying CD-ROM. An evaluation of vegetation loss through clearing on the coastal lowlands of the Wet Tropics revealed several nearextinct vegetation communities and regional ecosystems, and many others that are drastically reduced in area. Even ecosystems occurring on poorly drained lands have suffered a surprisingly high level of loss due to the effectiveness of drainage operations. Grassland ecosystems were found to be widespread on the Herbert and Tully floodplains, but are now close to extinction. The lowlands vegetation of the Wet Tropics that remains today continues to be fragmented and degraded despite the introduction of State-wide broad-scale tree-clearing laws in 1999, and the cessation of broadscale tree-clearing in December 2006

Psychosocial impact of undergoing prostate cancer screening for men with BRCA1 or BRCA2 mutations.

OBJECTIVES: To report the baseline results of a longitudinal psychosocial study that forms part of the IMPACT study, a multi-national investigation of targeted prostate cancer (PCa) screening among men with a known pathogenic germline mutation in the BRCA1 or BRCA2 genes. PARTICPANTS AND METHODS: Men enrolled in the IMPACT study were invited to complete a questionnaire at collaborating sites prior to each annual screening visit. The questionnaire included sociodemographic characteristics and the following measures: the Hospital Anxiety and Depression Scale (HADS), Impact of Event Scale (IES), 36-item short-form health survey (SF-36), Memorial Anxiety Scale for Prostate Cancer, Cancer Worry Scale-Revised, risk perception and knowledge. The results of the baseline questionnaire are presented. RESULTS: A total of 432 men completed questionnaires: 98 and 160 had mutations in BRCA1 and BRCA2 genes, respectively, and 174 were controls (familial mutation negative). Participants' perception of PCa risk was influenced by genetic status. Knowledge levels were high and unrelated to genetic status. Mean scores for the HADS and SF-36 were within reported general population norms and mean IES scores were within normal range. IES mean intrusion and avoidance scores were significantly higher in BRCA1/BRCA2 carriers than in controls and were higher in men with increased PCa risk perception. At the multivariate level, risk perception contributed more significantly to variance in IES scores than genetic status. CONCLUSION: This is the first study to report the psychosocial profile of men with BRCA1/BRCA2 mutations undergoing PCa screening. No clinically concerning levels of general or cancer-specific distress or poor quality of life were detected in the cohort as a whole. A small subset of participants reported higher levels of distress, suggesting the need for healthcare professionals offering PCa screening to identify these risk factors and offer additional information and support to men seeking PCa screening

New genetic loci link adipose and insulin biology to body fat distribution.

Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic outcomes, independent of overall adiposity. To increase our understanding of the genetic basis of body fat distribution and its molecular links to cardiometabolic traits, here we conduct genome-wide association meta-analyses of traits related to waist and hip circumferences in up to 224,459 individuals. We identify 49 loci (33 new) associated with waist-to-hip ratio adjusted for body mass index (BMI), and an additional 19 loci newly associated with related waist and hip circumference measures (P < 5 × 10(-8)). In total, 20 of the 49 waist-to-hip ratio adjusted for BMI loci show significant sexual dimorphism, 19 of which display a stronger effect in women. The identified loci were enriched for genes expressed in adipose tissue and for putative regulatory elements in adipocytes. Pathway analyses implicated adipogenesis, angiogenesis, transcriptional regulation and insulin resistance as processes affecting fat distribution, providing insight into potential pathophysiological mechanisms

Height-diameter allometry of tropical forest trees

Tropical tree height-diameter (H:D) relationships may vary by forest type and region making large-scale estimates of above-ground biomass subject to bias if they ignore these differences in stem allometry. We have therefore developed a new global tropical forest database consisting of 39 955 concurrent H and D measurements encompassing 283 sites in 22 tropical countries. Utilising this database, our objectives were: 1. to determine if H:D relationships differ by geographic region and forest type (wet to dry forests, including zones of tension where forest and savanna overlap). 2. to ascertain if the H:D relationship is modulated by climate and/or forest structural characteristics (e.g. stand-level basal area, A). 3. to develop H:D allometric equations and evaluate biases to reduce error in future local-to-global estimates of tropical forest biomass. Annual precipitation coefficient of variation (PV), dry season length (SD), and mean annual air temperature (TA) emerged as key drivers of variation in H:D relationships at the pantropical and region scales. Vegetation structure also played a role with trees in forests of a high A being, on average, taller at any given D. After the effects of environment and forest structure are taken into account, two main regional groups can be identified. Forests in Asia, Africa and the Guyana Shield all have, on average, similar H:D relationships, but with trees in the forests of much of the Amazon Basin and tropical Australia typically being shorter at any given D than their counterparts elsewhere. The region-environment-structure model with the lowest Akaike's information criterion and lowest deviation estimated stand-level H across all plots to within amedian &minus;2.7 to 0.9% of the true value. Some of the plot-to-plot variability in H:D relationships not accounted for by this model could be attributed to variations in soil physical conditions. Other things being equal, trees tend to be more slender in the absence of soil physical constraints, especially at smaller D. Pantropical and continental-level models provided less robust estimates of H, especially when the roles of climate and stand structure in modulating H:D allometry were not simultaneously taken into account. © 2011 Author(s)

Bi-allelic Loss-of-Function CACNA1B Mutations in Progressive Epilepsy-Dyskinesia.

The occurrence of non-epileptic hyperkinetic movements in the context of developmental epileptic encephalopathies is an increasingly recognized phenomenon. Identification of causative mutations provides an important insight into common pathogenic mechanisms that cause both seizures and abnormal motor control. We report bi-allelic loss-of-function CACNA1B variants in six children from three unrelated families whose affected members present with a complex and progressive neurological syndrome. All affected individuals presented with epileptic encephalopathy, severe neurodevelopmental delay (often with regression), and a hyperkinetic movement disorder. Additional neurological features included postnatal microcephaly and hypotonia. Five children died in childhood or adolescence (mean age of death: 9 years), mainly as a result of secondary respiratory complications. CACNA1B encodes the pore-forming subunit of the pre-synaptic neuronal voltage-gated calcium channel Cav2.2/N-type, crucial for SNARE-mediated neurotransmission, particularly in the early postnatal period. Bi-allelic loss-of-function variants in CACNA1B are predicted to cause disruption of Ca2+ influx, leading to impaired synaptic neurotransmission. The resultant effect on neuronal function is likely to be important in the development of involuntary movements and epilepsy. Overall, our findings provide further evidence for the key role of Cav2.2 in normal human neurodevelopment.MAK is funded by an NIHR Research Professorship and receives funding from the Wellcome Trust, Great Ormond Street Children's Hospital Charity, and Rosetrees Trust. E.M. received funding from the Rosetrees Trust (CD-A53) and Great Ormond Street Hospital Children's Charity. K.G. received funding from Temple Street Foundation. A.M. is funded by Great Ormond Street Hospital, the National Institute for Health Research (NIHR), and Biomedical Research Centre. F.L.R. and D.G. are funded by Cambridge Biomedical Research Centre. K.C. and A.S.J. are funded by NIHR Bioresource for Rare Diseases. The DDD Study presents independent research commissioned by the Health Innovation Challenge Fund (grant number HICF-1009-003), a parallel funding partnership between the Wellcome Trust and the Department of Health, and the Wellcome Trust Sanger Institute (grant number WT098051). We acknowledge support from the UK Department of Health via the NIHR comprehensive Biomedical Research Centre award to Guy's and St. Thomas' National Health Service (NHS) Foundation Trust in partnership with King's College London. This research was also supported by the NIHR Great Ormond Street Hospital Biomedical Research Centre. J.H.C. is in receipt of an NIHR Senior Investigator Award. The research team acknowledges the support of the NIHR through the Comprehensive Clinical Research Network. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR, Department of Health, or Wellcome Trust. E.R.M. acknowledges support from NIHR Cambridge Biomedical Research Centre, an NIHR Senior Investigator Award, and the University of Cambridge has received salary support in respect of E.R.M. from the NHS in the East of England through the Clinical Academic Reserve. I.E.S. is supported by the National Health and Medical Research Council of Australia (Program Grant and Practitioner Fellowship)

Vegetation change 10 years after cattle removal in a savanna landscape

Following the establishment of a conservation reserve, changes in ground stratum vegetation following removal of cattle were examined in a northern Australian savanna over a 10-year period. The floristic composition of 40 vegetation plots in lowland savannas were surveyed shortly after acquisition of the property, and then surveyed twice in the following 10 years after cattle removal. Some notable ecosystem-transforming introduced species (weeds) such as Themeda quadrivalvis remained relatively stable, whereas the pasture legume Stylosanthes scabra increased in cover. The species richness of both native and introduced plants increased. Various plant functional groups changed in relative cover, with a decline in relatively unpalatable grasses and a corresponding increase in palatable grasses, responses that are consistent with recovery from grazing pressure. Our results show that removal of cattle in highly disturbed savanna ecosystems can have both positive and negative results for native ground stratum vegetation in the first decade of recovery

Diversity favours the old: Metrics of avian diversity increase in aging regrowth Acacia woodlands of semi-arid eastern Australia

Understanding how native fauna use regrowth vegetation is critical because of increased land clearing rates and biodiversity loss, yet it remains poorly studied in Australia's semi-arid regions. The aim of this study was to use acoustic sensors to monitor avian diversity in three different age classes (new regrowth 30 years) of Acacia dominated, predominately mulga (Acacia aneura) woodlands in the Mulga Lands bioregion of south-west Queensland. We found that species richness (SR), functional diversity (FD) and phylogenetic diversity (PD) increased with time since last clearance, with statistically significant differences between new regrowth and old growth. Generalised linear models showed that tree cover was a significant predicator of SR, FD and PD. A non-metric multidimensional scaling analysis revealed that species composition was more similar within than between age classes. Each age class had unique species, yet intermediate regrowth and old growth shared a large number of species suggesting a convergence in species composition. The results of this study show that while old growth vegetation sustains the highest level of biodiversity, intermediate and new regrowth still support a range of bird species. Therefore, regrowth mulga vegetation represents important habitat for avian biodiversity in semi-arid western Queensland and should be protected

Determination of an Immunocontraceptive Peptide in a Wildlife Vaccine Formulation

Wildlife populations continue to grow despite the use of traditional management techniques. GonaCon™ Immunocontraceptive Vaccine is a vaccine used to reduce reproduction in mammalian species, including white-tailed deer (Odocoileus virginianus). The vaccine consists of synthetic gonadotropin releasing hormone (GnRH) conjugated to a mollusk hemocyanin (Concholepas concholepas) prepared as an emulsion with mineral oil to promote a prolonged immune response. Development of an analytical method for determination of the active ingredient in the vaccine formulation was complicated by the emulsion and conjugation of GnRH to the carrier protein. Breaking the emulsion was achieved chemically by addition of diethyl ether. The aqueous portion containing the GnRH conjugate was cleaved enzymatically with a protease (clostripain) at the arginine-proline site of its peptide sequence. Hydrolysis produced a diagnostic eight amino acid peptide fragment which was unique to GnRH and easily quantified by LC/MS/MS. Typical recoveries of fortified samples at the target concentration exceeded 90%