Underwater Hyperspectral Imaging (UHI): a review of systems and applications for proximal seafloor ecosystem studies

Marine ecosystem monitoring requires observations of its attributes at different spatial and temporal scales that traditional sampling methods (e.g., RGB imaging, sediment cores) struggle to efficiently provide. Proximal optical sensing methods can fill this observational gap by providing observations of, and tracking changes in, the functional features of marine ecosystems non-invasively. Underwater hyperspectral imaging (UHI) employed in proximity to the seafloor has shown a further potential to monitor pigmentation in benthic and sympagic phototrophic organisms at small spatial scales (mm–cm) and for the identification of minerals and taxa through their finely resolved spectral signatures. Despite the increasing number of studies applying UHI, a review of its applications, capabilities, and challenges for seafloor ecosystem research is overdue. In this review, we first detail how the limited band availability inherent to standard underwater cameras has led to a data analysis “bottleneck” in seafloor ecosystem research, in part due to the widespread implementation of underwater imaging platforms (e.g., remotely operated vehicles, time-lapse stations, towed cameras) that can acquire large image datasets. We discuss how hyperspectral technology brings unique opportunities to address the known limitations of RGB cameras for surveying marine environments. The review concludes by comparing how different studies harness the capacities of hyperspectral imaging, the types of methods required to validate observations, and the current challenges for accurate and replicable UHI research

Pneumocystis jirovecii Transmission from Immunocompetent Carriers to Infant

We report a case of Pneumocystis jirovecii transmission from colonized grandparents to their infant granddaughter. Genotyping of P. jirovecii showed the same genotypes in samples from the infant and her grandparents. These findings support P. jirovecii transmission from immunocompetent carrier adults to a susceptible child

Predictors of tropical cyclone-induced urban tree failure: an international scoping review

Background: Trees are critical components of rural and urban ecosystems throughout the world. While they have adapted to the historic conditions of their native environments, climate change, urbanization, and human-assisted range expansion may test the storm resiliency of many tree species. Objective: In this global multilingual scoping review, we investigate a range of intrinsic (i.e., tree characteristics) and external (i.e., environmental and management) factors which have been used to predict tree failure during tropical cyclones. Design: We searched online databases and journals in English, Chinese, French, Japanese, Portuguese, and Spanish to find peer-reviewed papers and dissertations. We retained papers that used ground-based methods to study tree damage following a tropical cyclone and conducted a statistical analysis of factors that influence tree resistance to damage. From each paper we extracted details of study methods, and the relationships between damage and predictors. Results: Our efforts generated 65 peer-reviewed papers and dissertations that met our final criteria for inclusion (i.e., data on the relative proportion of trees failed/intact as assessed no more than a year after the storm event). Of these papers 37 independent variables were assessed to predict tree failure. Research in both urban and rural settings tends to be concentrated in regions frequently impacted by tropical cyclones. Characteristics of species such as wood density have been studied in rural environments and are also relevant predictors for tree failure in urban trees. Environmental characteristics unique to urban settings such as planting areas surrounded by pavement need further research. Several urban studies demonstrate that risk assessment methods can predict tree failure during a storm. Conclusion: Results can be used by future storm researchers to identify both predictors may warrant inclusion in their models as well as predictors which have yet to be tested. Results can also inform planning and activities that can mitigate tropical cyclone damage to the urban forest

Efectos del cambio climático sobre estados tempranos de Quercus ariifolia (Fagaceae), un encino endémico de bosques estacionalmente secos de México

Background and Aims: Tree recruitment in seasonally dry forests occurs during the rainy season. However, higher temperatures and reduced rainfalls are expected in these ecosystems because of climate change. These changes could induce drought conditions during the rainy season and affect tree recruitment. Plants subjected to thermal or water stress often display morphological and physiological shifts addressed to prioritize their survival. If recently emerged tree seedlings display these responses, this could improve their development during the rainy season and increase their survival chances. Our aim was to test whether recently emerged oak seedlings display these responses.Methods: We performed a field experiment with Quercus ariifolia, an oak species endemic to seasonally dry forests of central Mexico. At the beginning of the rainy season (September 2016), we sowed acorns of this species in control plots under the current climate and plots in which climate change was simulated by increasing temperature and reducing rainfall (CCS plots). Seedling emergence and survival were monitored every seven days during the rainy season (until January 2017). At the end of the experiment, we measured several functional traits on surviving seedlings and compared them between controls and CCS plots.Key results: Higher temperature and lower rainfall generated water shortage conditions in CCS plots. This did not affect emergence of seedlings but reduced their survival. Seedlings that survived in CCS plots displayed shifts in their functional traits, which matched with those of plants subjected to thermal and water stress.Conclusions: Our results suggest that climate change can increase the extinction risk of Q. ariifolia in seasonally dry forest of Mexico by reducing the survival of its offspring. Nevertheless, the results also suggest that seedlings developed under climate change conditions can display functional shifts that could confer them tolerance to increased drought.Antecedentes y Objetivos: El reclutamiento de árboles en bosques estacionalmente secos ocurre en la temporada de lluvias. Sin embargo, en estos ecosistemas se esperan mayores temperaturas y menores precipitaciones debido al cambio climático. Estos cambios pueden inducir condiciones de sequía durante la temporada de lluvias y afectar el reclutamiento. Las plantas sometidas a estrés térmico e hídrico usualmente muestran cambios morfológicos y fisiológicos dirigidos a priorizar su supervivencia. Si plántulas recientemente emergidas muestran estas respuestas, esto pudiera mejorar su desarrollo durante la temporada de lluvias y aumentar sus posibilidades de supervivencia. Nuestro objetivo fue establecer si plántulas de encino recién emergidas muestran estas respuestas.Métodos: Realizamos un experimento de campo con Quercus ariifolia, un encino endémico de bosques estacionalmente secos del centro de México. Al comienzo de la temporada de lluvias (septiembre 2016) sembramos bellotas de esta especie en parcelas control bajo el clima actual, y parcelas donde aumentamos la temperatura y redujimos la precipitación (parcelas CCS). La emergencia y la supervivencia de plántulas se registró cada siete días durante la temporada de lluvias (hasta enero 2017). Al final del experimento, medimos varios rasgos funcionales en las plántulas sobrevivientes y los comparamos entre controles y parcelas CCS.Resultados clave: La mayor temperatura y la menor precipitación generaron condiciones de sequía en las parcelas CCS. Esto no afectó la emergencia de plántulas, pero redujo su supervivencia. Las plántulas sobrevivientes en las parcelas CCS mostraron cambios en sus rasgos funcionales, que coincidían con los observados en plantas sometidas a estrés térmico y/o hídrico.Conclusiones: Nuestros resultados sugieren que el cambio climático puede aumentar el riesgo de extinción de Q. ariifolia en bosques estacionalmente secos de México al reducir la supervivencia de plántulas. Sin embargo, los resultados también sugieren que las plántulas desarrolladas en condiciones de cambio climático pueden mostrar alteraciones funcionales que pudieran conferirles tolerancia al aumento de la sequía

Definición de retiros en cuencas urbanas.

Se propone en este trabajo una metodología para la definición de los retiros en cuencas urbanas altamente intervenidas, en función de elementos tales como: capacidad hidráulica del río, estabilidad de márgenes y taludes del cauce, franjas para zonas ornamentales y recreación pasiva, franjas de terreno para la extensión de redes de servicios públicos, zonas para la circulación, vías vehiculares o peatonales, zonas de amortiguación para la protección de los ecosistemas en los cauces y las riberas y acceso al cauce y a las zonas de amortiguación para su mantenimiento

Urban biodiversity : State of the science and future directions

Since the 1990s, recognition of urban biodiversity research has increased steadily. Knowledge of how ecological communities respond to urban pressures can assist in addressing global questions related to biodiversity. To assess the state of this research field in meeting this aim, we conducted a systematic review of the urban biodiversity literature published since 1990. We obtained data from 1209 studies that sampled ecological communities representing 12 taxonomic groups. While advances have been made in the field over the last 30 years, we found that urban biodiversity research has primarily been conducted in single cities within the Palearctic and Nearctic realms, within forest remnants and residential locations, and predominantly surveys plants and birds, with significant gaps in research within the Global South and little integration of multi-species and multi-trophic interactions. Sample sizes remain limited in spatial and temporal scope, but citizen science and remote sensing resources have broadened these efforts. Analytical approaches still rely on taxonomic diversity to describe urban plant and animal communities, with increasing numbers of integrated phylogenetic and trait-based analyses. Despite the implementation of nature-based solutions across the world's cities, only 5% of studies link biodiversity to ecosystem function and services, pointing to substantial gaps in our understanding of such solutions. We advocate for future research that encompasses a greater diversity of taxonomic groups and urban systems, focusing on biodiversity hotspots. Implementing such research would enable researchers to move forward in an equitable and multidisciplinary way to tackle the complex issues facing global urban biodiversity.Peer reviewe

Charge separation relative to the reaction plane in Pb-Pb collisions at sNN=2.76\sqrt{s_{\rm NN}}= 2.76 TeV

Measurements of charge dependent azimuthal correlations with the ALICE detector at the LHC are reported for Pb-Pb collisions at $\sqrt{s_{\rm NN}} = 2.76$ TeV. Two- and three-particle charge-dependent azimuthal correlations in the pseudo-rapidity range $|\eta| < 0.8$ are presented as a function of the collision centrality, particle separation in pseudo-rapidity, and transverse momentum. A clear signal compatible with a charge-dependent separation relative to the reaction plane is observed, which shows little or no collision energy dependence when compared to measurements at RHIC energies. This provides a new insight for understanding the nature of the charge dependent azimuthal correlations observed at RHIC and LHC energies.Comment: 12 pages, 3 captioned figures, authors from page 2 to 6, published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/286