A Parallel Tabu Search Algorithm for Optimizing Multiobjective VLSI Placement

Abstract. In this paper, we present a parallel tabu search (TS) algorithm for efficient optimization of a constrained multiobjective VLSI standard cell placement problem. The primary purpose is to accelerate TS algorithm to reach near optimal placement solutions for large circuits. The proposed technique employs a candidate list partitioning strategy based on distribution of mutually disjoint set of moves among the slave processes. The implementation is carried out on a dedicated cluster of workstations. Experimental results using ISCAS-85/89 benchmark circuits illustrating quality and speedup trends are presented. A comparison of the obtained results is made with the results of a parallel genetic algorithm (GA) implementation

Groundwater, geothermal modelling and monitoring at city-scale : reviewing European practice and knowledge exchange : TU1206 COST sub-urban WG2 report

The need for cities to make more effective use of the subsurface on which they stand, is increasingly being recognised in Europe and further afield to be essential for future cities to be sustainable and more resilient [1,2]. However, city planning worldwide remains largely 2D, with very few cities having any substantial subsurface planning or Masterplans – the cities of Helsinki, Montreal, Singapore being rare exceptions [3,4]. The consequences of inadequate consideration and planning of the subsurface are far-reaching, in economic, environmental and social terms. Across Europe, poor understanding of ground conditions is recognised as the largest single cause of construction project delay and overspends [5]. Management of urban groundwater and shallow geothermal energy resources is becoming increasingly important as cities are increasingly looking to use these resources to meet current and future energy and heating and water needs. Whilst these are, alongside potential underground building space, the two most important resources for future cities, the monitoring and regulation of these resource is widely variable across Europe. For subsurface opportunities such as groundwater and geothermal energy to be realised and utilised to greatest effect to support growing city populations and infrastructure, city planners must be both aware of, and have some understanding of the resources, available data and research, and both the opportunities and risks which the resources provide to city development [6,7]. To supply this understanding to city municipalities and others, geological surveys must have robust datasets of groundwater and geothermal resources at city-scale, and the relevant knowledge and understanding from these data must be made accessible to inform subsurface planning in appropriate datasets relevant to different scale of interest in different planning stages. What density and frequency of data are required for a robust understanding of a city’s groundwater and geothermal resources will be different in different cities, according to the complexity of the resources, and the intensity of subsurface use and demands on the resources. Indeed, no one design of city-scale monitoring or modelling of ground-water and -heat resources is appropriate for all cities, or for all monitoring objectives. However, the guiding principles of good practice for developing robust city-scale monitoring, and datasets are widely applicable, as are the key principles for ensuring these data inform city planning processes. This report provides an initial review of existing examples of current practices in Europe with respect to groundwater and geothermal monitoring and modelling, as a resource for other cities to learn from and build upon. The report also provides an overview of some of the different practices used for communicating groundwater and geothermal energy data and knowledge to inform urban planning and managemen

Elevated serum neutrophil elastase is related to prehypertension and airflow limitation in obese women

<p>Abstract</p> <p>Background</p> <p>Neutrophil elastase level/activity is elevated in a variety of diseases such as atherosclerosis, systolic hypertension and obstructive pulmonary disease. It is unknown whether obese individuals with prehypertension also have elevated neutrophil elastase, and if so, whether it has a deleterious effect on pulmonary function. Objectives: To determine neutrophil elastase levels in obese prehypertensive women and investigate correlations with pulmonary function tests.</p> <p>Methods</p> <p>Thirty obese prehypertensive women were compared with 30 obese normotensive subjects and 30 healthy controls. The study groups were matched for age. Measurements: The following were determined: body mass index, waist circumference, blood pressure, lipid profile, high sensitivity C-reactive protein, serum neutrophil elastase, and pulmonary function tests including forced expiratory volume in one second (FEV₁), forced vital capacity (FVC) and FEV₁/FVC ratio.</p> <p>Results</p> <p>Serum neutrophil elastase concentration was significantly higher in both prehypertensive (405.8 ± 111.6 ng/ml) and normotensive (336.5 ± 81.5 ng/ml) obese women than in control non-obese women (243.9 ± 23.9 ng/ml); the level was significantly higher in the prehypertensive than the normotensive obese women. FEV1, FVC and FEV1/FVC ratio in both prehypertensive and normotensive obese women were significantly lower than in normal controls, but there was no statistically significant difference between the prehypertensive and normotensive obese women. In prehypertensive obese women, there were significant positive correlations between neutrophil elastase and body mass index, waist circumference, systolic blood pressure, diastolic blood pressure, total cholesterol, triglyceride, low density lipoprotein cholesterol, high sensitivity C-reactive protein and negative correlations with high density lipoprotein cholesterol, FEV1, FVC and FEV1/FVC.</p> <p>Conclusion</p> <p>Neutrophil elastase concentration is elevated in obese prehypertensive women along with an increase in high sensitivity C-reactive protein which may account for dyslipidemia and airflow dysfunction in the present study population.</p

Measurements of normalized differential cross sections for tt̄ production in pp collisions at √(s)=7 TeV using the ATLAS detector

Measurements of normalized differential cross sections for top-quark pair production are presented as a function of the top-quark transverse momentum, and of the mass, transverse momentum, and rapidity of the t¯t system, in proton–proton collisions at a center-of-mass energy of √s=7  TeV. The data set corresponds to an integrated luminosity of 4.6  fb−1, recorded in 2011 with the ATLAS detector at the CERN Large Hadron Collider. Events are selected in the lepton+jets channel, requiring exactly one lepton and at least four jets with at least one of the jets tagged as originating from a b-quark. The measured spectra are corrected for detector efficiency and resolution effects and are compared to several Monte Carlo simulations and theory calculations. The results are in fair agreement with the predictions in a wide kinematic range. Nevertheless, data distributions are softer than predicted for higher values of the mass of the t¯t system and of the top-quark transverse momentum. The measurements can also discriminate among different sets of parton distribution functions

Synthesis of 2-azidoethyl α-d-mannopyranoside orthogonally protected and selective deprotections

4 páginas, 1 figura, 2 esquemas.We present the synthesis of a fully orthogonally protected mannosyl glycoside 1 and the corresponding methods for selective deprotections. Mannosyl glycoside 1 contains a functionalized linker at the anomeric position to allow for the attachment of carbohydrate units to scaffolds in order to prepare carbohydrate multivalent systems.We would like to thank FIS (PI030093), for financial supportPeer reviewe

Cells isolated from fat pad and synovial fluid. are they suitable for cartilage repair?

Purpose: Autologous Chondrocyte Implantation (ACI) is used as a cellular therapy for treating defects in articular cartilage. Successful ACI depends on high cell number and quality of the cells which varies between patients. Alternative cell sources within the joint may provide a more preferable treatment for OA. The aim of this study is to evaluate the clinical suitability of infrapatellar fat pad (FP) and synovial fluid (SF) cells for cartilage repair by determining their MSC-like profile and response to an inflammatory stimulus in vitro.Methods: Fat pad and synovial fluid were obtained with consent from the knees of patients undergoing ACI treatment. Cells were isolated from FP by enzymatic digestion with Collagenase I for 1 h at 37oC followed by centrifugation. Synovial fluid cells were obtained by centrifuging the synovial fluid. Resulting cell pellets were seeded onto tissue culture plastic in DMEM-F12, 10 % FCS and Penicillin/Streptomycin. Expression of cell surface markers was assessed using Flow cytometry (FACSCanto II). The multipotency of these cells was tested by culturing in monolayer in osteogenic and adipogenic media. Chondrogenesis was assessed in 3D pellet culture for 21 days. To evaluate the immunoresponsive nature of FP and SF cells, the expression of co-stimulatory markers CD40, CD80, CD86, and Major Histocompatibility complex II (HLA-DR) was tested before and after stimulation (48 h) with low (25ng/ml) and high (500ng/ml) concentrations of interferon-γ (IFN-γ). Results were compared to those obtained from bone marrow derived mesenchymal stem cells (BMSCs).Results: SF and FP cells showed the ability to differentiate down osteogenic, adipogenic and chondrogenic lineages as shown by positive alkaline phosphatase (bone), Oil Red O (lipid) and Toluidine blue (glycosaminoglycan) staining.Cells from both SF and FP were positive for the MSC markers CD73, CD90, CD105 and negative for HLA-DR. Following stimulation with IFN-γ, both SF and FP cells upregulated CD40 and HLA-DR. In comparison, BMSCs upregulated HLA-DR after IFN- γ stimulation but not the co-stimulatory marker CD40.Conclusion: Cells isolated from FP and SF of osteoarthritic joints display immunogenic properties after stimulation with the pro-inflammatory cytokine IFN-γ which may make them unsuitable as alternative cell sources for ACI. Despite the production of co-stimulatory markers (CD40) and up regulation of HLA-DR as mentioned above, these cells do show multipotency via their ability to differentiate down osteogenic, adipogenic and chondrogenic lineages and they express the MSC markers CD73, 90 and 105. Their immunoresponsive nature needs to be studied further before these cells could be considered for routine applications for cartilage repair

Splicing conservation signals in plant long non-coding RNAs

Long noncoding RNAs (lncRNAs) have recently emerged as prominent regulators of gene expression in eukaryotes. LncRNAs often drive the modification and maintenance of gene activation or gene silencing states via chromatin conformation rearrangements. In plants, lncRNAs have been shown to participate in gene regulation, and are essential to processes such as vernalization and photomorphogenesis. Despite their prominent functions, only over a dozen lncRNAs have been experimentally and functionally characterized. Similar to its animal counterparts, the rates of sequence divergence are much higher in plant lncRNAs than in protein coding mRNAs, making it difficult to identify lncRNA conservation using traditional sequence comparison methods. Beyond this, little is known about the evolutionary patterns of lncRNAs in plants. Here, we characterized the splicing conservation of lncRNAs in Brassicaceae. We generated a whole-genome alignment of 16 Brassica species and used it to identify synthenic lncRNA orthologs. Using a scoring system trained on transcriptomes from A. thaliana and B. oleracea, we identified splice sites across the whole alignment and measured their conservation. Our analysis revealed that 17.9% (112/627) of all intergenic lncRNAs display splicing conservation in at least one exon, an estimate that is substantially higher than previous estimates of lncRNA conservation in this group. Our findings agree with similar studies in vertebrates, demonstrating that splicing conservation can be evidence of stabilizing selection. We provide conclusive evidence for the existence of evolutionary deeply conserved lncRNAs in plants and describe a generally applicable computational workflow to identify functional lncRNAs in plants