Development and operation of a pixel segmented liquid-filled linear array for radiotherapy quality assurance

A liquid isooctane (C$_{8}$H$_{18}$) filled ionization linear array for radiotherapy quality assurance has been designed, built and tested. The detector consists of 128 pixels, each of them with an area of 1.7 mm $\times$ 1.7 mm and a gap of 0.5 mm. The small pixel size makes the detector ideal for high gradient beam profiles like those present in Intensity Modulated Radiation Therapy (IMRT) and radiosurgery. As read-out electronics we use the X-Ray Data Acquisition System (XDAS) with the Xchip developed by the CCLRC. Studies concerning the collection efficiency dependence on the polarization voltage and on the dose rate have been made in order to optimize the device operation. In the first tests we have studied dose rate and energy dependences, and signal reproducibility. Dose rate dependence was found lower than 2.5 % up to 5 Gy min$^{-1}$, and energy dependence lower than 2.1 % up to 20 cm depth in solid water. Output factors and penumbras for several rectangular fields have been measured with the linear array and were compared with the results obtained with a 0.125 cm$^{3}$ air ionization chamber and radiographic film, respectively. Finally, we have acquired profiles for an IMRT field and for a virtual wedge. These profiles have also been compared with radiographic film measurements. All the comparisons show a good correspondence. Signal reproducibility was within a 2% during the test period (around three months). The device has proved its capability to verify on-line therapy beams with good spatial resolution and signal to noise ratio.Comment: 16 pages, 12 figures Submitted to Phys. Med. Bio

Meropenem heteroresistance in clinical isolates of OXA-48–producing Klebsiella pneumoniae

OXA-48–producing Klebsiella pneumoniae isolates often show growth of colonies within inhibition zones in carbapenem diffusion assays. The nature of these colonies was investigated in a series of clinical isolates of OXA-48–producing K. pneumoniae obtained in the context of a hospital outbreak, and they were found to be persistent colonies that reproduced again the same phenotype when they were collected and tested in diffusion assays again. The frequency of mutations conferring resistance to meropenem (8 µg/mL) was determined for the same isolates. The average mutation frequency was 5.47·10-6 (range: 2.59·10-8–5.87·10-5), and the analysis of several resistant mutants showed that all of them had mutations in the ompK36 porin gene. Heteroresistance was investigated using population analysis profiling. The profiles were compatible with mutation frequency assays, and all the colonies analyzed were resistant mutants. In OXA-48–producing K. pneumoniae, the growth of persisters seems to be specific of diffusion assays

Using radio astronomical receivers for molecular spectroscopic characterization in astrochemical laboratory simulations: A proof of concept

We present a proof of concept on the coupling of radio astronomical receivers and spectrometers with chemical reactorsand the performances of the resulting setup for spectroscopy and chemical simulations in laboratory astrophysics. Several experiments including cold plasma generation and UV photochemistry were performed in a 40\,cm long gas cell placed in the beam path of the Aries 40\,m radio telescope receivers operating in the 41-49 GHz frequency range interfaced with fast Fourier transform spectrometers providing 2 GHz bandwidth and 38 kHz resolution. The impedance matching of the cell windows has been studied using different materials. The choice of the material and its thickness was critical to obtain a sensitivity identical to that of standard radio astronomical observations. Spectroscopic signals arising from very low partial pressures of CH3OH, CH3CH2OH, HCOOH, OCS,CS, SO2 (<1E-03 mbar) were detected in a few seconds. Fast data acquisition was achieved allowing for kinetic measurements in fragmentation experiments using electron impact or UV irradiation. Time evolution of chemical reactions involving OCS, O2 and CS2 was also observed demonstrating that reactive species, such as CS, can be maintained with high abundance in the gas phase during these experiments.Comment: Accepted for publication in Astronomy and Astrophysics in September 21, 2017. 16 pages, 18 figure

Size reduction of complex networks preserving modularity

The ubiquity of modular structure in real-world complex networks is being the focus of attention in many trials to understand the interplay between network topology and functionality. The best approaches to the identification of modular structure are based on the optimization of a quality function known as modularity. However this optimization is a hard task provided that the computational complexity of the problem is in the NP-hard class. Here we propose an exact method for reducing the size of weighted (directed and undirected) complex networks while maintaining invariant its modularity. This size reduction allows the heuristic algorithms that optimize modularity for a better exploration of the modularity landscape. We compare the modularity obtained in several real complex-networks by using the Extremal Optimization algorithm, before and after the size reduction, showing the improvement obtained. We speculate that the proposed analytical size reduction could be extended to an exact coarse graining of the network in the scope of real-space renormalization.Comment: 14 pages, 2 figure

Pattern Recognition in a Bimodal Aquifer Using the Normal-Score Ensemble Kalman Filter

The ensemble Kalman filter (EnKF) is now widely used in diverse disciplines to estimate model parameters and update model states by integrating observed data. The EnKF is known to perform optimally only for multi-Gaussian distributed states and parameters. A new approach, the normal-score EnKF (NS-EnKF), has been recently proposed to handle complex aquifers with non-Gaussian distributed parameters. In this work, we aim at investigating the capacity of the NS-EnKF to identify patterns in the spatial distribution of the model parameters (hydraulic conductivities) by assimilating dynamic observations in the absence of direct measurements of the parameters themselves. In some situations, hydraulic conductivity measurements (hard data) may not be available, which requires the estimation of conductivities from indirect observations, such as piezometric heads. We show how the NS-EnKF is capable of retrieving the bimodal nature of a synthetic aquifer solely from piezometric head data. By comparison with a more standard implementation of the EnKF, the NS-EnKF gives better results with regard to histogram preservation, uncertainty assessment, and transport predictions. © 2011 International Association for Mathematical Geosciences.The authors gratefully acknowledge the financial support by the Spanish Ministry of Science and Innovation through project CGL2011-23295. The first author appreciates the financial aid from China Scholarship Council (CSC No. [2007]3020).Zhou, H.; Li, L.; Hendricks Franssen, H.; Gómez-Hernández, JJ. (2012). Pattern Recognition in a Bimodal Aquifer Using the Normal-Score Ensemble Kalman Filter. Mathematical Geosciences. 44(2):169-185. https://doi.org/10.1007/s11004-011-9372-3S169185442Arulampalam MS, Maskell S, Gordon N, Clapp T (2002) A tutorial on particle filters for online nonlinear/non-Gaussian Bayesian tracking. IEEE Trans Signal Process 50(2):174–188Bertino L, Evensen G, Wackernagel H (2003) Sequential data assimilation techniques in oceanography. Int Stat Rev 71(2):223–241Burgers G, Jan van Leeuwen P, Evensen G (1998) Analysis scheme in the ensemble Kalman filter. Mon Weather Rev 126(6):1719–1724Carrera J, Neuman SP (1986b) Estimation of aquifer parameters under transient and steady state conditions: 2. Uniqueness, stability, and solution algorithms. Water Resour Res 22(2):211–227Chen Y, Zhang D (2006) Data assimilation for transient flow in geologic formations via ensemble Kalman filter. Adv Water Resour 29:1107–1122Delhomme JP (1979) Spatial variability and uncertainty in groundwater flow parameters: a geostatistical approach. Water Resour Res 15(2):269–280Evensen G (1994) Sequential data assimilation with a nonlinear quasi-geostrophic model using Monte Carlo methods to forecast error statistics. 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J Energy Resour Technol 128:79–87Harbaugh AW, Banta ER, Hill MC, McDonald MG (2000) MODFLOW-2000, the U.S. geological survey modular ground-water model—user guide to modularization concepts and the ground-water flow process. Tech rep. Open-File Report 00-92, U.S. Department of the Interior, U.S. Geological Survey. Reston, Virginia, 121 ppHendricks Franssen HJ, Kinzelbach W (2008) Real-time groundwater flow modeling with the Ensemble Kalman Filter: joint estimation for states and parameters and the filter inbreeding problem. Water Resour Res 44:W09408Hendricks Franssen HJ, Kinzelbach W (2009) Ensemble Kalman filtering versus sequential self-calibration for inverse modelling of dynamic groundwater flow systems. J Hydrol 365(3–4):261–274Houtekamer PL, Mitchell HL (2001) A sequential ensemble Kalman filter for atmospheric data assimilation. Mon Weather Rev 129:123–137Journel AG, Deutsch CV (1993) Entropy and spatial disorder. Math Geol 25(3):329–355Li L, Zhou H, Gómez-Hernández JJ (2011a) A comparative study of three-dimensional hydraulic conductivity upscaling at the macrodispersion experiment (MADE) site, Columbus air force base, Mississippi (USA). J Hydrol 404(3–4):278–293Li L, Zhou H, Gómez-Hernández JJ (2011b) Transport upscaling using multi-rate mass transfer in three-dimensional highly heterogeneous porous media. Adv Water Resour 34(4):478–489Moradkhani H, Sorooshian S, Gupta HV, Houser PR (2005) Dual state-parameter estimation of hydrological models using ensemble Kalman filter. Adv Water Resour 28:135–147Naevdal G, Johnsen L, Aanonsen S, Vefring E (Mar. 2005) Reservoir monitoring and continuous model updating using ensemble Kalman filter. SPE J 10(1):66–74Pardo-Igúzquiza E, Dowd PA (2003) CONNEC3D: a computer program for connectivity analysis of 3D random set models. Comput Geosci 29:775–785Schöniger A, Nowak W, Hendricks Franssen HJ (2011) Parameter estimation by ensemble Kalman filters with transformed data: approach and application to hydraulic tomography. Water Resour Res (submitted)Simon E, Bertino L (2009) Application of the Gaussian anamorphosis to assimilation in a 3-D coupled physical-ecosystem model of the North Atlantic with the EnKF: a twin experiment. Ocean Sci 5:495–510Stauffer D, Aharony A (1994) Introduction to percolation theory. Taylor and Francis, London. 181 ppStrébelle S 2000. Sequential simulation drawing structures from training images. PhD thesis, Stanford University. 187 ppStrebelle S (2002) Conditional simulation of complex geological structures using multiple-point statistics. Math Geol 34(1):1–21Wen X, Chen W (2006) Real-time reservoir model updating using ensemble Kalman filter: the confirming approach. SPE J 11(4):431–442Wen X, Chen W (2007) Some practical issues on real time reservoir updating using ensemble Kalman filter. SPE J 12(2):156–166Zhou H, Gómez-Hernández JJ, Hendricks Franssen H-J, Li L (2011) An approach to handling non-gaussianity of parameters and state variables in ensemble Kalman filtering. Adv Water Resour 34(7):844–864Zinn B, Harvey C (2003) When good statistical models of aquifer heterogeneity go bad: a comparison of flow, dispersion, and mass transfer in connected and multivariate Gaussian hydraulic conductivity fields. Water Resour Res 39(3):105

Prevalence and psychosocial risk factors of depression in a group of older adults in Bogota

prevalencia se ha descrito entre 1,2 a 12% en mayores que viven en comunidad. Objetivo: estimar la prevalencia de depresión en un muestra de adultos mayores de Bogotá y describir los factores de riesgo psicosocial asociados. Material y métodos: se realizó un estudio de corte transversal observacional-descriptivo, en 889 adultos mayores autónomos. La depresión fue evaluada con el test de depresión geriátrica Yesavage y los factores de riesgo con la sección de acontecimientos vitales del cuestionario Predict. Resultados: el 74% de la muestra estuvo constituida por mujeres, la media de edad fue de 72,51 (DS 9,4) años y la escolaridad promedio en años fue de 7,50 (DS 5,64). Así mismo, se estimó una prevalencia de depresión del 18,6%, siendo mayor en mujeres (20%) y (18%) en sujetos entre 70 y 79 años, los adultos con baja escolaridad sumaron un 43%, y el 22% lo constituyeron personas dependientes económicamente. Por otra parte, se encontró relación entre la depresión y cinco de los factores de riesgo psicosocial conocidos como acontecimientos vitales adversos: insomnio, vivir solo, padecer enfermedades crónicas, haber sufrido una crisis económica, y la muerte de un familiar o amigo cercano en el último año. Conclusión: la prevalencia de depresión en un grupo de personas mayores de la comunidad en Bogotá es más alta que lo descrito previamente en Colombia y por la Organización Mundial de la Salud (OMS). Programas que reduzcan la soledad en la vejez y protejan a la mujer y a los mayores con menos escolaridad podrían mitigar esta condición.Introduction: depression is one of the most prevalent diseases in the elderly. In Colombia, the prevalence of depression in this population ranges from 1,2 to 12%. Objective: to estimate the prevalence of depression in a group of independent elderly subjects in Bogota and describe the psychosocial risk factors associated with it. Material and methods: a cross-observational and descriptive study was done. The sample was constituted of 889 autonomous elderly subjects of Bogota city. Depression was assessed by applying the Test of Geriatric Depression-Yesavage-. Besides, the psychosocial risk factors were measured through the life events section, which is part of the Predict Questionnaire. Results: 74% of the sample was made up of women, the mean age was 72,51 years old (DS.9,4) and the average of education was of 7.50 years (DS.5,64). Besides, it was found a prevalence of depression of 18,6%. This prevalence was higher in the women (20%) and elderly between 70 and 79 years old (18%), adults with low education with 43% or 22% in economically dependent people. A relationship between depression and five psychosocial risk factors, known as adverse life events-insomnia, living alone, suffering a chronic disease or economic crisis or the death of the couple, a close friend or a relative. Conclusion: results showed a higher prevalence of depression in this sample in comparison to the findings yielded in previous studies developed in Colombia and the WHO. Programs that help to reduce the long lines protect women and older with less schooling ageing could mitigate the condition

Ni-62(n,gamma) and Ni-63(n,gamma) cross sections measured at the n_TOF facility at CERN

The cross section of the Ni-62(n,gamma) reaction was measured with the time-of-flight technique at the neutron time-of-flight facility n_TOF at CERN. Capture kernels of 42 resonances were analyzed up to 200 keV neutron energy and Maxwellian averaged cross sections (MACS) from kT = 5-100 keV were calculated. With a total uncertainty of 4.5%, the stellar cross section is in excellent agreement with the the KADoNiS compilation at kT = 30 keV, while being systematically lower up to a factor of 1.6 at higher stellar temperatures. The cross section of the Ni-63(n,gamma) reaction was measured for the first time at n_TOF. We determined unresolved cross sections from 10 to 270 keV with a systematic uncertainty of 17%. These results provide fundamental constraints on s-process production of heavier species, especially the production of Cu in massive stars, which serve as the dominant source of Cu in the solar system.Peer reviewedFinal Accepted Versio

Measurement of the 12C(n,p)12B cross section at n-TOF at CERN by in-beam activation analysis

The integral cross section of the 12C(n,p)12B reaction has been determined for the first time in the neutron energy range from threshold to several GeV at the n-TOF facility at CERN. The measurement relies on the activation technique with the β decay of 12B measured over a period of four half-lives within the same neutron bunch in which the reaction occurs. The results indicate that model predictions, used in a variety of applications, are mostly inadequate. The value of the integral cross section reported here can be used as a benchmark for verifying or tuning model calculations.Peer reviewedFinal Accepted Versio

High-accuracy determination of the U 238 / U 235 fission cross section ratio up to ≈1 GeV at n-TOF at CERN

Published by the American Physical Society under the terms of the Creative Commons Attribution 3.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOIThe U238 to U235 fission cross section ratio has been determined at n-TOF up to ≈1 GeV, with two different detection systems, in different geometrical configurations. A total of four datasets has been collected and compared. They are all consistent to each other within the relative systematic uncertainty of 3-4%. The data collected at n-TOF have been suitably combined to yield a unique fission cross section ratio as a function of neutron energy. The result confirms current evaluations up to 200 MeV. Good agreement is also observed with theoretical calculations based on the INCL++/Gemini++ combination up to the highest measured energy. The n-TOF results may help solve a long-standing discrepancy between the two most important experimental datasets available so far above 20 MeV, while extending the neutron energy range for the first time up to ≈1 GeV.Peer reviewedFinal Published versio