72 research outputs found
PloS one
The vasculoprotective properties of delphinidin are driven mainly by its action on endothelial cells. Moreover, delphinidin displays anti-angiogenic properties in both in vitro and in vivo angiogenesis models and thereby might prevent the development of tumors associated with excessive vascularization. This study was aimed to test the effect of delphinidin on melanoma-induced tumor growth with emphasis on its molecular mechanism on endothelial cells. Delphinidin treatment significantly decreased in vivo tumor growth induced by B16-F10 melanoma cell xenograft in mice. In vitro, delphinidin was not able to inhibit VEGFR2-mediated B16-F10 melanoma cell proliferation but it specifically reduced basal and VEGFR2-mediated endothelial cell proliferation. The anti-proliferative effect of delphinidin was reversed either by the MEK1/2 MAP kinase inhibitor, U-0126, or the PI3K inhibitor, LY-294002. VEGF-induced proliferation was reduced either by U-0126 or LY-294002. Under these conditions, delphinidin failed to decrease further endothelial cell proliferation. Delphinidin prevented VEGF-induced phosphorylation of ERK1/2 and p38 MAPK and decreased the expression of the transcription factors, CREB and ATF1. Finally, delphinidin was more potent in inhibiting in vitro cyclic nucleotide phosphodiesterases (PDEs), PDE1 and PDE2, compared to PDE3-PDE5. Altogether delphinidin reduced tumor growth of melanoma cell in vivo by acting specifically on endothelial cell proliferation. The mechanism implies an association between inhibition of VEGF-induced proliferation via VEGFR2 signalling, MAPK, PI3K and at transcription level on CREB/ATF1 factors, and the inhibition of PDE2. In conjunction with our previous studies, we demonstrate that delphinidin is a promising compound to prevent pathologies associated with generation of vascular network in tumorigenesis
Scapinin, the Protein Phosphatase 1 Binding Protein, Enhances Cell Spreading and Motility by Interacting with the Actin Cytoskeleton
Copyright (c) 2009 Sagara et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Scapinin, also named phactr3, is an actin and protein phosphatase 1 (PP1) binding protein, which is expressed in the adult brain and some tumor cells. At present, the role(s) of scapinin in the brain and tumors are poorly understood. We show that the RPEL-repeat domain of scapinin, which is responsible for its direct interaction with actin, inhibits actin polymerization in vitro. Next, we established a Hela cell line, where scapinin expression was induced by tetracycline. In these cells, expression of scapinin stimulated cell spreading and motility. Scapinin was colocalized with actin at the edge of spreading cells. To explore the roles of the RPEL-repeat and PP1-binding domains, we expressed wild-type and mutant scapinins as fusion proteins with green fluorescence protein (GFP) in Cos7 cells. Expression of GFP-scapinin (wild type) also stimulated cell spreading, but mutation in the RPEL-repeat domain abolished both the actin binding and the cell spreading activity. PP1-binding deficient mutants strongly induced cell retraction. Long and branched cytoplasmic processes were developed during the cell retraction. These results suggest that scapinin enhances cell spreading and motility through direct interaction with actin and that PP1 plays a regulatory role in scapinin-induced morphological changes.ArticlePLOS ONE. 4(1):e4247 (2009)journal articl
Phonons and related properties of extended systems from density-functional perturbation theory
This article reviews the current status of lattice-dynamical calculations in
crystals, using density-functional perturbation theory, with emphasis on the
plane-wave pseudo-potential method. Several specialized topics are treated,
including the implementation for metals, the calculation of the response to
macroscopic electric fields and their relevance to long wave-length vibrations
in polar materials, the response to strain deformations, and higher-order
responses. The success of this methodology is demonstrated with a number of
applications existing in the literature.Comment: 52 pages, 14 figures, submitted to Review of Modern Physic
A modified Ehrenfest formalism for efficient large-scale ab initio molecular dynamics
We present in detail the recently derived ab-initio molecular dynamics (AIMD)
formalism [Phys. Rev. Lett. 101 096403 (2008)], which due to its numerical
properties, is ideal for simulating the dynamics of systems containing
thousands of atoms. A major drawback of traditional AIMD methods is the
necessity to enforce the orthogonalization of the wave-functions, which can
become the bottleneck for very large systems. Alternatively, one can handle the
electron-ion dynamics within the Ehrenfest scheme where no explicit
orthogonalization is necessary, however the time step is too small for
practical applications. Here we preserve the desirable properties of Ehrenfest
in a new scheme that allows for a considerable increase of the time step while
keeping the system close to the Born-Oppenheimer surface. We show that the
automatically enforced orthogonalization is of fundamental importance for large
systems because not only it improves the scaling of the approach with the
system size but it also allows for an additional very efficient parallelization
level. In this work we provide the formal details of the new method, describe
its implementation and present some applications to some test systems.
Comparisons with the widely used Car-Parrinello molecular dynamics method are
made, showing that the new approach is advantageous above a certain number of
atoms in the system. The method is not tied to a particular wave-function
representation, making it suitable for inclusion in any AIMD software package.Comment: 28 pages, 5 figures, published in a special issue of J. Chem. Theory
Comp. in honour of John Perde
Sildenafil Reduces Insulin-Resistance in Human Endothelial Cells
The efficacy of Phosphodiesterase 5 (PDE5) inhibitors to re-establish endothelial function is reduced in diabetic patients. Recent evidences suggest that therapy with PDE5 inhibitors, i.e. sildenafil, may increase the expression of nitric oxide synthase (NOS) proteins in the heart and cardiomyocytes. In this study we analyzed the effect of sildenafil on endothelial cells in insulin resistance conditions in vitro
Towards Increased Recovery of Critical Raw Materials from WEEE– evaluation of CRMs at a component level and pre-processing methods for interface optimisation with recovery processes
Increasing recovery of critical raw materials (CRMs) from waste electrical and electronic equipment (WEEE) is a strategic priority to mitigate supply risks. Today, CRM recovery rates are generally low, with increases requiring new recovery processes and interface optimisation with pre-processing to ensure appropriate material flows for efficient recovery are generated. Here, results from an industrial trial to increase CRM recovery from WEEE are presented to inform development of pre-processing strategies which generate such material flows. Au, Ag, Co, Ga, Mg, Nb, Ru, Pd, Ir, Y, Nd, Sb, Ta and W are identified with XRF in components of a range of WEEE samples including within individual printed circuit board (PCB) components. CRM distribution in PCBs is mapped by visual inspection with reference to this data. Cost-effective methods to disassemble WEEE; isolate CRM bearing components, and upgrade/concentrate CRMs are evaluated for industrial adoption. A guillotine is found most suitable for LCD disassembly and separation of Au edge-contacts from PCBs, while cryocracking is best for isolation of internal components of digital media devices. Thermal PCB disassembly with a solder bath for simultaneous SMD removal and subsequent sieving to sort SMDs thereby concentrating CRMs for recovery is a promising approach. Microwave ashing of PCBs to concentrate CRMs is promising although off-gas treatment would be required. Recovery potential of identified CRMs from material streams generated is found to be poor due to lack of suitable recovery infrastructure except for precious and platinum group metals in PCBs, but available pyrometallurgical recovery permanently dissipates other CRMs present
Volatile and Organic Compositions of Sedimentary Rocks in Yellowknife Bay, Gale crater, Mars
H₂O, CO₂, SO₂, O₂, H₂, H₂S, HCl, chlorinated hydrocarbons, NO and other trace gases were evolved during pyrolysis of two mudstone samples acquired by the Curiosity rover at Yellowknife Bay within Gale crater, Mars. H₂O/OH-bearing phases included 2:1 phyllosilicate(s), bassanite, akaganeite, and amorphous materials. Thermal decomposition of carbonates and combustion of organic materials are candidate sources for the CO₂. Concurrent evolution of O₂ and chlorinated hydrocarbons suggest the presence of oxychlorine phase(s). Sulfides are likely sources for S-bearing species. Higher abundances of chlorinated hydrocarbons in the mudstone compared with Rocknest windblown materials previously analyzed by Curiosity suggest that indigenous martian or meteoritic organic C sources may be preserved in the mudstone; however, the C source for the chlorinated hydrocarbons is not definitively of martian origin
A Habitable Fluvio-Lacustrine Environment at Yellowknife Bay, Gale Crater, Mars
The Curiosity rover discovered fine-grained sedimentary rocks, inferred to represent an ancient lake, preserve evidence of an environment that would have been suited to support a Martian biosphere founded on chemolithoautotrophy. This aqueous environment was characterized by neutral pH, low salinity, and variable redox states of both iron and sulfur species. C, H, O, S, N, and P were measured directly as key biogenic elements, and by inference N and P are assumed to have been available. The environment likely had a minimum duration of hundreds to tens of thousands of years. These results highlight the biological viability of fluvial-lacustrine environments in the post-Noachian history of Mars
Elemental Geochemistry of Sedimentary Rocks at Yellowknife Bay, Gale Crater, Mars
Sedimentary rocks examined by the Curiosity rover at Yellowknife Bay, Mars, were derived from sources that evolved from approximately average Martian crustal composition to one influenced by alkaline basalts. No evidence of chemical weathering is preserved indicating arid, possibly cold, paleoclimates and rapid erosion/deposition. Absence of predicted geochemical variations indicates that magnetite and phyllosilicates formed by diagenesis under low temperature, circum-neutral pH, rock-dominated aqueous conditions. High spatial resolution analyses of diagenetic features, including concretions, raised ridges and fractures, indicate they are composed of iron- and halogen-rich components, magnesium-iron-chlorine-rich components and hydrated calcium-sulfates, respectively. Composition of a cross-cutting dike-like feature is consistent with sedimentary intrusion. Geochemistry of these sedimentary rocks provides further evidence for diverse depositional and diagenetic sedimentary environments during the early
history of Mars
The Petrochemistry of Jake_M: A Martian Mugearite
“Jake_M,” the first rock analyzed by the Alpha Particle X-ray Spectrometer instrument on the
Curiosity rover, differs substantially in chemical composition from other known martian igneous
rocks: It is alkaline (>15% normative nepheline) and relatively fractionated. Jake_M is
compositionally similar to terrestrial mugearites, a rock type typically found at ocean islands and
continental rifts. By analogy with these comparable terrestrial rocks, Jake_M could have been
produced by extensive fractional crystallization of a primary alkaline or transitional magma at
elevated pressure, with or without elevated water contents. The discovery of Jake_M suggests that
alkaline magmas may be more abundant on Mars than on Earth and that Curiosity could encounter
even more fractionated alkaline rocks (for example, phonolites and trachytes)
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