Sir William Dawson (1820–1899): a very modern paleobotanist

Sir William Dawson was one of Canada’s most influential Nineteenth Century geologists. Although a lifelong opponent of the concept of evolution, a stance that resulted in him being sidelined by the scientific community, he made enormous contributions to Pennsylvanian paleobotany, especially at the Joggins fossil cliffs of Nova Scotia. Key to Dawson’s success was his recognition of the importance of a field-based research program, in which fossil plants could be observed in their precise geological context over a sustained period of time. Uniquely trained as both geologist and botanist, he was skilled in the microscopic analysis of permineralized plant anatomy, and appreciated the enormous potential of fossil charcoal as an untapped source of systematic information. Arguably his most extraordinary insights came in the field of plant taphonomy, in which studies of modern sedimentary processes and environments were used to interpret the rock record. His analysis of fossil plants in their sedimentary context allowed Pennsylvanian coal swamp communities, dominated by lycopsids and calamiteans, to be distinguished from the coniferopsid forests, which occupied mountainous regions further inland. The lasting significance of Dawson’s paleobotanical work is emphasized by many recent papers concerning the Pennsylvanian coal measures of Atlantic Canada, which have either directly built on research topics that Dawson initiated, or have confirmed hypotheses that Dawson framed. Until recent times, the discipline of paleobotany has been dominated by systematic fossil plant description with little or no reference to geological context. By virtue of his distinctively holistic approach, synthesizing all available geological and botanical data, Dawson is marked out from his contemporaries. His methodology does not appear old-fashioned even today, and it is therefore with justification that we describe him as a very modern paleobotanist. Resumé Sir William Dawson a été l’un des géologues les plus influents du 19e siècle au Canada. Même s’il s’est opposé toute sa vie au concept de l’évolution, une position qui a amené le milieu scientifique à l’ignorer, il a énormément contribué à la paléobotanique pennsylvanienne, spécialement dans les falaises fossilifères de Joggins de la Nouvelle-Écosse. La clé du succès de Dawson réside dans le fait qu’il avait reconnu l’importance d’un programme de recherche sur le terrain prévoyant l’observation des plantes fossiles dans leur milieu géologique particulier pendant une période de temps prolongée. Grâce à sa formation unique de géologue et de botaniste, il possédait la compétence voulue pour réaliser une analyse microscopique de l’anatomie des plantes perminéralisées et il comprenait le potentiel énorme du charbon de bois fossile comme source inexploitée de données systématiques. On pourrait soutenir que ses idées les plus extraordinaires se sont manifestées dans le domaine de la taphonomie végétale, dans lequel des études d’environnements et de processus sédimentaires modernes ont servi à interpréter des antécédents lithologiques. Ses analyses de plantes fossiles dans leur contexte sédimentaire ont permis de distinguer les communautés des marécages houillers pennsylvaniens, dans lesquels prédominent les lycopsides et les calamites, des forêts coniféropsides, qui occupaient les régions montagneuses plus à l’intérieur des terres. De nombreuses communications récentes au sujet des couches houillères pennsylvaniennes des provinces de l’Atlantique, qui s’appuient directement sur des sujets de recherches amorcées par Dawson ou ayant confirmé des hypothèses formulées par Dawson, mettent en relief l’importance durable des travaux paléobotaniques de Dawson. La discipline de la paléobotanique a jusqu’à tout récemment été dominée par des descriptions systématiques de plantes fossiles évoquant à peine ou n’évoquant pas du tout le contexte géologique. Dawson s’est démarqué de ses contemporains au moyen de son approche nettement holistique en réalisant une synthèse de toutes les données géologiques et botaniques accessibles. Sa méthode de travail ne semble pas rétrograde, même aujourd’hui, et il est par conséquent tout à fait justifié que nous le décrivions en tant que paléobotaniste très moderne

Stratigraphy and sedimentology of early Pennsylvanian red beds at Lower Cove, Nova Scotia, Canada: the Little River Formation with redefinition of the Joggins Formation

The coastal cliffs along the eastern shore of Chignecto Bay, Nova Scotia contain one of the finest Carboniferous sections in the world. In 1843, Sir William Logan measured the entire section as the first project of the Geological Survey of Canada, and defined eight stratigraphic divisions. We have re-measured a section corresponding almost exactly with Logan’s Division 5 in bed-by-bed detail. The strata are exposed in the wave-cut platform and low-relief bluffs of a 2 km-long section at Lower Cove, near Joggins, north and south of Little River. This 635.8 metre-thick succession until now has been included within the basal part of the Joggins Formation, and overlies the Boss Point Formation. However, the studied strata are lithologically distinct, and are formally recognized as the new Little River Formation. This formation is bounded by regionally important surfaces and is traceable inland for 30 kilometres from its Lower Cove type section. Facies analysis indicates that it represents the deposits of a well-drained alluvial plain dissected by shallow rivers characterized by flashy flow. It can be clearly distinguished from the underlying Boss Point Formation (Logan’s Division 6) by its much smaller channels, and from the overlying Joggins Formation (Logan’s Division 4) by lack of coal seams and bivalve-bearing limestone beds. Palynological assemblages indicate that the Little River Formation is of probable late Namurian to basal Westphalian (basal Langsettian) age, and is a likely time-equivalent of the informal Grand-Anse formation of southeast New Brunswick. Resumé Les falaises côtières longeant le rivage oriental de la baie Chignectou, en Nouvelle-Écosse, abritent l’un des stratotypes carbonifères les plus intéressants dans le monde. Sir William Logan avait mesuré en 1843 l’ensemble du stratotype dans le cadre du premier projet de la Commission géologique du Canada et il avait défini huit divisions stratigraphiques. Nous avons mesuré à nouveau un stratotype correspondant presque exactement dans ses détails couche par couche à la division 5 de Logan. Les strates affleurent dans une plate-forme d’érosion et des falaises de relief émoussé d’un secteur de deux kilomètres de longueur à l’anse Lower, près de Joggins, au nord et au sud de la rivière Little. Cette succession de 635,8 mètres d’épaisseur avait jusqu’à maintenant été incluse à l’intérieur de la partie basale de la Formation de Joggins et elle recouvre la Formation de Boss Point. Les strates étudiées sont cependant lithologiquement distinctes et on les reconnaît officiellement en tant que nouvelle Formation de Little River. Cette formation est limitée par des surfaces importantes à l’échelle régionale; on peut la retracer à l’intérieur des terres sur 30 kilomètres à partir de son stratotype de l’anse Lower. Une analyse du faciès révèle qu’il représente les dépôts d’une plaine alluviale bien drainée, sectionnée par des rivières peu profondes caractérisées par des crues éclair. On peut nettement la distinguer de la Formation sous-jacente de Boss Point (division 6 de Logan), grâce à ses canaux beaucoup plus petits, ainsi que de la Formation sus-jacente de Joggins (division 4 de Logan), par l’absence de couches houillères et de couches de calcaire abritant des lamellibranches. Les assemblages palynologiques révèlent que la Formation de Little River remonte probablement à la période du Namurien tardif au Westphalien basal (Langsettien basal) et qu’elle constitue vraisemblablement un équivalent chronologique de la Formation officieuse de Grande-Anse dans le sud-est du Nouveau-Brunswick

Palaeozoic giant dragonfies were hawker predators

The largest insects to have ever lived were the giant meganeurids of the Late Palaeozoic, ancient stem relatives of our modern dragonfies. With wingspans up to 71cm, these iconic insects have been the subject of varied documentaries on Palaeozoic life, depicting them as patrolling for prey through coal swamp forests amid giant lycopsids, and cordaites. Such reconstructions are speculative as few defnitive details of giant dragonfy biology are known. Most specimens of giant dragonfies are known from wings or isolated elements, but Meganeurites gracilipes preserves critical body structures, most notably those of the head. Here we show that it is unlikely it thrived in densely forested environments where its elongate wings would have become easily damaged. Instead, the species lived in more open habitats and possessed greatly enlarged compound eyes. These were dorsally hypertrophied, a specialization for long-distance vision above the animal in fight, a trait convergent with modern hawker dragonfies. Sturdy mandibles with acute teeth, strong spines on tibiae and tarsi, and a pronounced thoracic skewness are identical to those specializations used by dragonfies in capturing prey while in fight. The Palaeozoic Odonatoptera thus exhibited considerable morphological specializations associated with behaviours attributable to ‘hawkers’ or ‘perchers’ among extant Odonata.This work benefted from a grant of the French ‘Agence Nationale de la Recherche’ via the program ‘Investissements d’avenir’ (ANR-11-INBS-0004-RECOLNAT)JP and MP gratefully acknowledge research support from the Grant Agency of the Czech Republic No. 18-03118 SThe work of MSE was supported by US National Science Foundation grant DEB-114416

Salmonella Typhimurium Type III Secretion Effectors Stimulate Innate Immune Responses in Cultured Epithelial Cells

Recognition of conserved bacterial products by innate immune receptors leads to inflammatory responses that control pathogen spread but that can also result in pathology. Intestinal epithelial cells are exposed to bacterial products and therefore must prevent signaling through innate immune receptors to avoid pathology. However, enteric pathogens are able to stimulate intestinal inflammation. We show here that the enteric pathogen Salmonella Typhimurium can stimulate innate immune responses in cultured epithelial cells by mechanisms that do not involve receptors of the innate immune system. Instead, S. Typhimurium stimulates these responses by delivering through its type III secretion system the bacterial effector proteins SopE, SopE2, and SopB, which in a redundant fashion stimulate Rho-family GTPases leading to the activation of mitogen-activated protein (MAP) kinase and NF-κB signaling. These observations have implications for the understanding of the mechanisms by which Salmonella Typhimurium induces intestinal inflammation as well as other intestinal inflammatory pathologies

Antiinflammatory Therapy with Canakinumab for Atherosclerotic Disease

Background: Experimental and clinical data suggest that reducing inflammation without affecting lipid levels may reduce the risk of cardiovascular disease. Yet, the inflammatory hypothesis of atherothrombosis has remained unproved. Methods: We conducted a randomized, double-blind trial of canakinumab, a therapeutic monoclonal antibody targeting interleukin-1β, involving 10,061 patients with previous myocardial infarction and a high-sensitivity C-reactive protein level of 2 mg or more per liter. The trial compared three doses of canakinumab (50 mg, 150 mg, and 300 mg, administered subcutaneously every 3 months) with placebo. The primary efficacy end point was nonfatal myocardial infarction, nonfatal stroke, or cardiovascular death. RESULTS: At 48 months, the median reduction from baseline in the high-sensitivity C-reactive protein level was 26 percentage points greater in the group that received the 50-mg dose of canakinumab, 37 percentage points greater in the 150-mg group, and 41 percentage points greater in the 300-mg group than in the placebo group. Canakinumab did not reduce lipid levels from baseline. At a median follow-up of 3.7 years, the incidence rate for the primary end point was 4.50 events per 100 person-years in the placebo group, 4.11 events per 100 person-years in the 50-mg group, 3.86 events per 100 person-years in the 150-mg group, and 3.90 events per 100 person-years in the 300-mg group. The hazard ratios as compared with placebo were as follows: in the 50-mg group, 0.93 (95% confidence interval [CI], 0.80 to 1.07; P = 0.30); in the 150-mg group, 0.85 (95% CI, 0.74 to 0.98; P = 0.021); and in the 300-mg group, 0.86 (95% CI, 0.75 to 0.99; P = 0.031). The 150-mg dose, but not the other doses, met the prespecified multiplicity-adjusted threshold for statistical significance for the primary end point and the secondary end point that additionally included hospitalization for unstable angina that led to urgent revascularization (hazard ratio vs. placebo, 0.83; 95% CI, 0.73 to 0.95; P = 0.005). Canakinumab was associated with a higher incidence of fatal infection than was placebo. There was no significant difference in all-cause mortality (hazard ratio for all canakinumab doses vs. placebo, 0.94; 95% CI, 0.83 to 1.06; P = 0.31). Conclusions: Antiinflammatory therapy targeting the interleukin-1β innate immunity pathway with canakinumab at a dose of 150 mg every 3 months led to a significantly lower rate of recurrent cardiovascular events than placebo, independent of lipid-level lowering. (Funded by Novartis; CANTOS ClinicalTrials.gov number, NCT01327846.

The 13th Data Release of the Sloan Digital Sky Survey: First Spectroscopic Data from the SDSS-IV Survey Mapping Nearby Galaxies at Apache Point Observatory

The fourth generation of the Sloan Digital Sky Survey (SDSS-IV) began observations in July 2014. It pursues three core programs: APOGEE-2,MaNGA, and eBOSS. In addition, eBOSS contains two major subprograms: TDSS and SPIDERS. This paper describes the first data release from SDSS-IV, Data Release 13 (DR13), which contains new data, reanalysis of existing data sets and, like all SDSS data releases, is inclusive of previously released data. DR13 makes publicly available 1390 spatially resolved integral field unit observations of nearby galaxies from MaNGA,the first data released from this survey. It includes new observations from eBOSS, completing SEQUELS. In addition to targeting galaxies and quasars, SEQUELS also targeted variability-selected objects from TDSS and X-ray selected objects from SPIDERS. DR13 includes new reductions ofthe SDSS-III BOSS data, improving the spectrophotometric calibration and redshift classification. DR13 releases new reductions of the APOGEE-1data from SDSS-III, with abundances of elements not previously included and improved stellar parameters for dwarf stars and cooler stars. For the SDSS imaging data, DR13 provides new, more robust and precise photometric calibrations. Several value-added catalogs are being released in tandem with DR13, in particular target catalogs relevant for eBOSS, TDSS, and SPIDERS, and an updated red-clump catalog for APOGEE.This paper describes the location and format of the data now publicly available, as well as providing references to the important technical papers that describe the targeting, observing, and data reduction. The SDSS website, http://www.sdss.org, provides links to the data, tutorials and examples of data access, and extensive documentation of the reduction and analysis procedures. DR13 is the first of a scheduled set that will contain new data and analyses from the planned ~6-year operations of SDSS-IV.PostprintPeer reviewe

A palaeoenvironmental reconstruction of the Middle Jurassic of Sardinia (Italy) based on integrated palaeobotanical, palynological and lithofacies data assessment

During the Jurassic, Sardinia was close to continental Europe. Emerged lands started from a single island forming in time a progressively sinking archipelago. This complex palaeogeographic situation gave origin to a diverse landscape with a variety of habitats. Collection- and literature-based palaeobotanical, palynological and lithofacies studies were carried out on the Genna Selole Formation for palaeoenvironmental interpretations. They evidence a generally warm and humid climate, affected occasionally by drier periods. Several distinct ecosystems can be discerned in this climate, including alluvial fans with braided streams (Laconi-Gadoni lithofacies), paralic swamps and coasts (Nurri-Escalaplano lithofacies), and lagoons and shallow marine environments (Ussassai-Perdasdefogu lithofacies). The non-marine environments were covered by extensive lowland and a reduced coastal and tidally influenced environment. Both the river and the upland/hinterland environments are of limited impact for the reconstruction. The difference between the composition of the palynological and palaeobotanical associations evidence the discrepancies obtained using only one of those proxies. The macroremains reflect the local palaeoenvironments better, although subjected to a transport bias (e.g. missing upland elements and delicate organs), whereas the palynomorphs permit to reconstruct the regional palaeoclimate. Considering that the flora of Sardinia is the southernmost of all Middle Jurassic European floras, this multidisciplinary study increases our understanding of the terrestrial environments during that period of time