Carbon recovery dynamics following disturbance by selective logging in Amazonian forests

Abstract When 2 Mha of Amazonian forests are disturbed by selective logging each year, more than 90 Tg of carbon (C) is emitted to the atmosphere. Emissions are then counterbalanced by forest regrowth. With an original modelling approach, calibrated on a network of 133 permanent forest plots (175 ha total) across Amazonia, we link regional differences in climate, soil and initial biomass with survivors' and recruits' C fluxes to provide Amazon-wide predictions of post-logging C recovery. We show that net aboveground C recovery over 10 years is higher in the Guiana Shield and in the west (21 AE3 Mg C ha À1 ) than in the south (12 AE3 Mg C ha À1 ) where environmental stress is high (low rainfall, high seasonality). We highlight the key role of survivors in the forest regrowth and elaborate a comprehensive map of post-disturbance C recovery potential in Amazonia

Dinâmica e estoque de carbono em floresta primária na região de Manaus/AM

Este trabalho analisou dados de três inventários florestais realizados na área da Floresta Experimental, pertencente à Embrapa Amazônia Ocidental e localizada no km 54 da BR-174, em Manaus/AM. O objetivo foi estudar a dinâmica da floresta - taxas de incremento, recrutamento e mortalidade - além do estoque de carbono, em uma área de floresta primária, sem qualquer tipo de intervenção. Os inventários foram realizados nos anos de 2005, 2007 e 2010, em 15 parcelas permanentes de 1 hectare cada, onde foram mensuradas todas as árvores com diâmetro a 1,3 m de altura do solo (DAP) superior a 10 cm. Foram calculadas as taxas de recrutamento e mortalidade, os incrementos periódicos anuais (IPAs) em termos de DAP, área basal e volume, as biomassas fresca e seca acima do nível do solo e total e o estoque de carbono da vegetação. As taxas de recrutamento foram de 2% e 1,8% e as de mortalidade foram de 0,95% e 1,3% para os períodos entre 2005 e 2007 e 2007 e 2010, respectivamente. O volume foi de 345,62 m3 ha-1 para o ano de 2005, aumentando para 360,67 m3 ha-1 em 2010, com IPAs de 4,32 m3 ha-1 ano-1 entre 2005 e 2007 e 1,31 m3 ha-1 ano-1 entre 2007 e 2010. O estoque de carbono total teve um acréscimo de 173,63 t C ha-1 em 2005 para 181,01 t C ha-1 em 2010, confirmando que a floresta acumulou carbono no período, atuando assim como sumidouro.This study analyzed data from three forest inventories conducted in the Experimental Forest, which belongs to Embrapa Western Amazon basin and is located at km 54 on BR-174, Manaus / AM. The aim was to study forest dynamics - the rates of recruitment, growth and mortality - in addition to carbon storage in an area of primary forest, without any intervention. The surveys were conducted in the years 2005, 2007 and 2010 in 15 permanent plots of 1 hectare each. There, all trees with diameter at breast height (DBH) above 10 cm were measured. We calculated the rates of recruitment and mortality, the periodic annual increments (PAIs) in terms of DBH, basal area and volume, fresh and dry biomass above the soil and total carbon storage in the vegetation. The recruitment rates were 2.0 percent and 1.8 percent, and mortality were 0.95 percent and 1.3 percent for the periods between 2005 and 2007 and 2007 and 2010, respectively. The volume was 345.62 m3 ha-1 for the year 2005, rising to 360.67 m3 ha-1 in 2010 with PAIs of 4.32 m3 ha-1 yr-1 between 2005 and 2007 and 1.31 m3 ha-1 yr-1 between 2007 and 2010. The total carbon storage increased from 173.63 t C ha-1 in 2005 to 181.01 t C ha-1 in 2010, confirming that the forest accumulated carbon in the period, acting as a sink

Dilatação dos confins: caminhos, vilas e cidades na formação da Capitania de São Paulo (1532-1822)

Este ensaio analisa a formação da rede urbana das capitanias de São Vicente e Santo Amaro, depois unidas na Capitania de São Paulo. Discute o processo de apropriação do sertão, a pulsação e dilatação dos confins ao sabor dos deslocamentos humanos e de interesses políticos. Interpreta o papel de capelas, freguesias, vilas e cidades no controle e produção de territórios metropolitanos em solos ultramarinos.This essay analyzes the development of urban networks in the Captaincies of São Vicente and Santo Amaro, later merged into the Captaincy of São Paulo. It discusses the process of appropriation of the sertão (backcountry), the commotion and expansion beyond the confines to the tune of population movements and political interests. The paper also interprets the role of chapels, parishes, villages and towns in initiatives to create and control metropolitan areas on overseas soil

Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a–b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per the editorial rules of Nature) was submitted to Nature, which on 18 October 2016 refused to publish it. As we think this problem is a very important one for zoological taxonomy, this text is published here exactly as submitted to Nature, followed by the list of the 493 taxonomists and collection-based researchers who signed it in the short time span from 20 September to 6 October 2016

Mapping genomic loci implicates genes and synaptic biology in schizophrenia

Schizophrenia has a heritability of 60-80%1, much of which is attributable to common risk alleles. Here, in a two-stage genome-wide association study of up to 76,755 individuals with schizophrenia and 243,649 control individuals, we report common variant associations at 287 distinct genomic loci. Associations were concentrated in genes that are expressed in excitatory and inhibitory neurons of the central nervous system, but not in other tissues or cell types. Using fine-mapping and functional genomic data, we identify 120 genes (106 protein-coding) that are likely to underpin associations at some of these loci, including 16 genes with credible causal non-synonymous or untranslated region variation. We also implicate fundamental processes related to neuronal function, including synaptic organization, differentiation and transmission. Fine-mapped candidates were enriched for genes associated with rare disruptive coding variants in people with schizophrenia, including the glutamate receptor subunit GRIN2A and transcription factor SP4, and were also enriched for genes implicated by such variants in neurodevelopmental disorders. We identify biological processes relevant to schizophrenia pathophysiology; show convergence of common and rare variant associations in schizophrenia and neurodevelopmental disorders; and provide a resource of prioritized genes and variants to advance mechanistic studies

The Genome of Anopheles darlingi, the main neotropical malaria vector

Anopheles darlingi is the principal neotropical malaria vector, responsible for more than a million cases of malaria per year on the American continent. Anopheles darlingi diverged from the African and Asian malaria vectors ∼100 million years ago (mya) and successfully adapted to the New World environment. Here we present an annotated reference A. darlingi genome, sequenced from a wild population of males and females collected in the Brazilian Amazon. A total of 10 481 predicted protein-coding genes were annotated, 72% of which have their closest counterpart in Anopheles gambiae and 21% have highest similarity with other mosquito species. In spite of a long period of divergent evolution, conserved gene synteny was observed between A. darlingi and A. gambiae. More than 10 million single nucleotide polymorphisms and short indels with potential use as genetic markers were identified. Transposable elements correspond to 2.3% of the A. darlingi genome. Genes associated with hematophagy, immunity and insecticide resistance, directly involved in vectorhuman and vectorparasite interactions, were identified and discussed. This study represents the first effort to sequence the genome of a neotropical malaria vector, and opens a new window through which we can contemplate the evolutionary history of anopheline mosquitoes. It also provides valuable information that may lead to novel strategies to reduce malaria transmission on the South American continent. The A. darlingi genome is accessible at www.labinfo.lncc.br/index.php/anopheles- darlingi. © 2013 The Author(s)

The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability

Chromobacterium violaceum is one of millions of species of free-living microorganisms that populate the soil and water in the extant areas of tropical biodiversity around the world. Its complete genome sequence reveals (i) extensive alternative pathways for energy generation, (ii) ≈500 ORFs for transport-related proteins, (iii) complex and extensive systems for stress adaptation and motility, and (iv) wide-spread utilization of quorum sensing for control of inducible systems, all of which underpin the versatility and adaptability of the organism. The genome also contains extensive but incomplete arrays of ORFs coding for proteins associated with mammalian pathogenicity, possibly involved in the occasional but often fatal cases of human C. violaceum infection. There is, in addition, a series of previously unknown but important enzymes and secondary metabolites including paraquat-inducible proteins, drug and heavy-metal-resistance proteins, multiple chitinases, and proteins for the detoxification of xenobiotics that may have biotechnological applications

Sinopse das espécies neotropicais do grupo nitida do gênero Apenesia (Hymenoptera, Bethylidae)

São descritas e ilustradas duas espécies: Apenesia quelata sp. nov. e A. trivisa sp. nov. São fornecidos registros geográficos novos e dados sobre variações morfoestruturais de A. membranaceus Lanes & Azevedo, 2004, A. paraensis Kieffer, 1910, A. quadrata Evans, 1963, A. serrulata Azevedo & Batista, 2002 e A. williamsi Evans, 1966. Duas espécies são sinonimizadas: A. laticeps Evans, 1963 como sinônimo júnior de A. quadrata Evans, 1963; A. truncaticeps (Kieffer, 1910) como sinônimo júnior de A. paraensis Kieffer, 1910. A fêmea de A. quadrata é descrita e ilustrada pela primeira vez. É fornecida chave de identificação para as espécies do grupo nitida, baseada em machos