Diversity of Arctic pelagic <i>Bacteria</i> with an emphasis on photoheterotrophs: a review

The Arctic Ocean is a unique marine environment with respect to seasonality of light, temperature, perennial ice cover, and strong stratification. Other important distinctive features are the influence of extensive continental shelves and its interactions with Atlantic and Pacific water masses and freshwater from sea ice melt and rivers. These characteristics have major influence on the biological and biogeochemical processes occurring in this complex natural system. Heterotrophic bacteria are crucial components of marine food webs and have key roles in controlling carbon fluxes in the oceans. Although it was previously thought that these organisms relied on the organic carbon in seawater for all of their energy needs, several recent discoveries now suggest that pelagic bacteria can depart from a strictly heterotrophic lifestyle by obtaining energy through unconventional mechanisms that are linked to the penetration of sunlight into surface waters. These photoheterotrophic mechanisms may play a significant role in the energy budget in the euphotic zone of marine environments. Modifications of light and carbon availability triggered by climate change may favor the photoheterotrophic lifestyle. Here we review advances in our knowledge of the diversity of marine photoheterotrophic bacteria and discuss their significance in the Arctic Ocean gained in the framework of the Malina cruise

Susceptibility to heavy metals and antibiotics of eight deep-sea hydrothermal vent bacteria carrying a 51.7 kb plasmid

Eight Pseudomonas-like bacteria isolated from the tube of the deep-sea hydrothermal vent Polychaete Alvinella pompejana were found to carry a 51.7 kb plasmid. All isolates but one were resistant to zinc (3 mM or more) and arsenate ions (200 mM or more). The strains were resistant to penicillin and chloramphenicol

Three-Dimensional Spatially Constrained Sulfur Isotopes Highlight Processes Controlling Sulfur Cycling in the Near Surface of the Iheya North Hydrothermal System, Okinawa Trough

Abstract Modern seafloor hydrothermal systems are unique environments in which many of the Earth's reservoirs, including the hydrosphere, biosphere, and geosphere, dynamically interact. Analysis of spatially constrained sulfur isotope compositions from fluids and hydrothermal precipitates within the discharge zone of a volcanogenic system can be used to trace the interactions between the various isotopically distinct sulfur reservoirs that result in the formation of hydrothermal massive sulfide deposits. Here we present in situ sulfur isotope results from laterally and vertically constrained euhedral hydrothermal pyrite from the Iheya North hydrothermal system in the Okinawa Trough, which was investigated during the Integrated Ocean Drilling Program Expedition 331. Hydrothermal pyrite at the North Big Chimney yields δ34S values of ~+11.9 ± 1.1‰ (1σ), which are near identical to the δ34S composition of the vent fluid. Outward, ~150 and ~450 m from North Big Chimney, hydrothermal pyrite within drill core yields δ34S equal to +10.9 ± 1.3‰ (1σ) and +7.0 ± 3.8‰ (1σ), respectively, showing a shift in isotopic composition away from the main vent site. This evolution to a lighter and more scattered isotopic signature of hydrothermal pyrite (which is easily identifiable from biogenic pyrite) is interpreted to indicate that the hydrothermal fluid leached sulfides (formed previously by biogenic processes) from the surrounding sedimentary strata. As the most significant metal enrichments (Fe, Zn, Cu, Bi, Tl, and Cd) are associated with samples that contain average hydrothermal pyrite δ34S values similar to δ34S of the vent fluid, we demonstrate that sulfur isotopes can vector toward metals in seafloor massive sulfide deposits

The ocean sampling day consortium.

Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world's oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits

Structural characterization of diabolic acid-based tetraester, tetraether and mixed ether/ester, membrane-spanning lipids of bacteria from the order Thermotogales

The distribution of core lipids in the membranes of nine different species of the order Thermotogales, one of the early and deep branching lineages in the Bacteria, were examined by HPLC/MS and demonstrated to consist of membrane-spanning diglycerol lipids comprised of diabolic acid-derived alkyl moieties. In the Thermotoga species the core membrane lipids are characterized by the presence of both ester and ether bonds, whereas in the phylogenetically more distinct Thermosipho and Fervidobacterium spp. only ester bonds occur. A tentative biosynthetic route for the biosynthesis of these membrane-spanning lipids is proposed. Since species of the order Thermotogales are assumed to have occurred early during the evolution of life on Earth, as suggested by its position in the phylogenetic tree of life, these data suggest that the ability to produce both ether and ester glycerol membrane lipids developed relatively early during microbial evolution

The ocean sampling day consortium

Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits

Expression and Putative Function of Innate Immunity Genes under in situ Conditions in the Symbiotic Hydrothermal Vent Tubeworm Ridgeia piscesae

The relationships between hydrothermal vent tubeworms and sulfide-oxidizing bacteria have served as model associations for understanding chemoautotrophy and endosymbiosis. Numerous studies have focused on the physiological and biochemical adaptations that enable these symbioses to sustain some of the highest recorded carbon fixation rates ever measured. However, far fewer studies have explored the molecular mechanisms underlying the regulation of host and symbiont interactions, specifically those mediated by the innate immune system of the host. To that end, we conducted a series of studies where we maintained the tubeworm, Ridgeia piscesae, in high-pressure aquaria and examined global and quantitative changes in gene expression via high-throughput transcriptomics and quantitative real-time PCR (qPCR). We analyzed over 32,000 full-length expressed sequence tags as well as 26 Mb of transcript sequences from the trophosome (the organ that houses the endosymbiotic bacteria) and the plume (the gas exchange organ in contact with the free-living microbial community). R. piscesae maintained under conditions that promote chemoautotrophy expressed a number of putative cell signaling and innate immunity genes, including pattern recognition receptors (PRRs), often associated with recognizing microbe-associated molecular patterns (MAMPs). Eighteen genes involved with innate immunity, cell signaling, cell stress and metabolite exchange were further analyzed using qPCR. PRRs, including five peptidoglycan recognition proteins and a Toll-like receptor, were expressed significantly higher in the trophosome compared to the plume. Although PRRs are often associated with mediating host responses to infection by pathogens, the differences in expression between the plume and trophosome also implicate similar mechanisms of microbial recognition in interactions between the host and symbiont. We posit that regulation of this association involves a molecular “dialogue” between the partners that includes interactions between the host’s innate immune system and the symbiont