A systematic approach to the interrogation and sharing of standardised biofilm signatures

Publicado em "6th International Conference on Practical Applications of Computational Biology & Bioinformatics", ISBN 978-3-642-28838-8The study of microorganism consortia, also known as biofilms, is associated to a number of applications in biotechnology, ecotechnology and clinical domains. A public repository on existing biofilm studies would aid in the design of new studies as well as promote collaborative and incremental work. However, bioinformatics approaches are hampered by the limited access to existing data. Scientific publications summarise the studies whilst results are kept in researchers’ private ad hoc files. Since the collection and ability to compare existing data is imperative to move forward in biofilm analysis, the present work has addressed the development of a systematic computer-amenable approach to biofilm data organisation and standardisation. A set of in-house studies involving pathogens and employing different state-of-the-art devices and methods of analysis was used to validate the approach. The approach is now supporting the activities of BiofOmics, a public repository on biofilm signatures (http://biofomics.org).The authors thank, among others, Rosario Oliveira, Maria Joao Vieira, Idalina Machado, Nuno Cerca, Mariana Henriques, Pilar Teixeira, Douglas Monteiro, Melissa Negri, Susana Lopes, Carina Almeida and Helder Lopes, for submitting their data. The financial support from IBB-CEB, Fundacao para a Ciencia e Tecnologia (FCT) and European Community fund FEDER (Program COMPETE), project PTDC/SAU-ESA/646091/2006/FCOMP-01-0124-FEDER-007480, are also gratefully acknowledged

Estudos sobre a nutrição mineral do arroz: XVI, absorção radicular e foliar do rádio fósforo por diversas variedades

Excised roots obtained from 8 varieties of rice (IAC-164, 165 and 1246, Batatais, Caqui, Dourado Precoce, 90 Dias and Senbon) were used to study the kinetics of P uptake. Three cultivars (IAC-164, 90 Dias and Senbon) were employed in an experiment designed to compare root and leaf uptake and to evaluate the long distance transport. The main conclusions were as follows: a) after 180 minutes of contact with the external solution the uptake reached a maximum in the case of varieties IAC-164 and 165 , 90 Dias and Dourado Precoce; the same took place with the remaining cultivars after 240 minutes; b) the best fitting for individual varieties was obtained by using eiter potential or exponential models of adjustment wherein time was the independent variable and rate of uptake was the dependent one. c) IAC-164 and IAC-165 showed the highest efficiency of absorption while Dourado Precoce and 90 dias showed the lowest one. d) some evidence for the operation of a dual uptake mechanism was obtained when data from all varieties were put together; e) root absorption was usually higher than foliar uptake.Estudando-se a absorção do rádio fósforo por raízes destacadas das variedades IAC-164, 165 e 1246, Batatais, Caqui, Dourado precoce, 90 dias e Senbon (as primeiras nacionais, a última japonesa) verificou-se diferença entre as mesmas na cinética de absorção. Nas condições experimentais, obteve-se evidência de um padrão duplo de absorção do anion fosfato. A absorção radicular mostrou-se mais eficiente que a foliar em termos de quantidade absorvida e de transporte a longa distânci

Estudos sobre a nutrição mineral do arroz: XX - marcha de absorção de micronutrientes pelas variedades IAC-164 e IAC-165

Rice plants were grown in nutrient solution till the end of their life cycle. At given stages of development plant samples harvested for the determination of dry matter and micronutrient contents in the various organs. The following conclusions were drawn: only Fe accumulation showed some degree of positive relation with dry matter production; the pattern of distribution of the elements among the plant parts was essentially the same, for both varieties; B, Cu and Fe tend to concentrate in the root system; no clear cut pattern of variation in leaf composition could be described throughout the plant life cycle; maximum rate of uptake took place between full tillering and panicle formation.Plantas de arroz, variedades IAC-164 e IAC-165 foram cultivadas em solução nutritiva até o fim do ciclo. Em estádios determinados do seu desenvolvimento foram colhidas amostras que depois de secas foram analisadas determinando-se B, Cu, Fe, Mn e Zn nos diversos órgãos. Os dados obtidos permitiram verificar que: somente a acumulação do Fe quando um para lelismo com a de matéria seca; o padrão da distribuição porcentual nos vários órgãos dos elementos analisados durante o ciclo foi o mesmo nas duas variedades verificando-se que B, Cu e Fe tendem a acumular-se mais nas raízes que na parte aérea o oposto acontecendo com o Mn e o Zn; não foram observadas variações consistentes nos teores foliares dos elementos durante o experimento; no período que vai do perfilhamento pleno até a formação da panícula foi em geral maior a velocidade de acumulação dos macronutrientes

Neutral pion and η\eta meson production in proton-proton collisions at s=0.9\sqrt{s}=0.9 TeV and s=7\sqrt{s}=7 TeV

The first measurements of the invariant differential cross sections of inclusive $\pi^0$ and $\eta$ meson production at mid-rapidity in proton-proton collisions at $\sqrt{s}=0.9$ TeV and $\sqrt{s}=7$ TeV are reported. The $\pi^0$ measurement covers the ranges $0.4<p_T<7$ GeV/$c$ and $0.3<p_T<25$ GeV/$c$ for these two energies, respectively. The production of $\eta$ mesons was measured at $\sqrt{s}=7$ TeV in the range $0.4<p_T<15$ GeV/$c$. Next-to-Leading Order perturbative QCD calculations, which are consistent with the $\pi^0$ spectrum at $\sqrt{s}=0.9$ TeV, overestimate those of $\pi^0$ and $\eta$ mesons at $\sqrt{s}=7$ TeV, but agree with the measured $\eta/\pi^0$ ratio at $\sqrt{s}=7$ TeV.Comment: 17 pages, 5 captioned figures, 2 tables, authors from page 12, published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/310

J/psi Production as a Function of Charged Particle Multiplicity in pp Collisions at sqrt{s} = 7 TeV

The ALICE collaboration reports the measurement of the inclusive J/psi yield as a function of charged particle pseudorapidity density dN_{ch}/deta in pp collisions at sqrt{s} = 7 TeV at the LHC. J/psi particles are detected for p_t > 0, in the rapidity interval |y| < 0.9 via decay into e+e-, and in the interval 2.5 < y < 4.0 via decay into mu+mu- pairs. An approximately linear increase of the J/psi yields normalized to their event average (dN_{J/psi}/dy)/ with (dN_{ch}/deta)/ is observed in both rapidity ranges, where dN_{ch}/deta is measured within |eta| < 1 and p_t > 0. In the highest multiplicity interval with = 24.1, corresponding to four times the minimum bias multiplicity density, an enhancement relative to the minimum bias J/psi yield by a factor of about 5 at 2.5 < y < 4 (8 at |y| < 0.9) is observed.Comment: Submitted to Phys. Lett.