Refugia of marine fish in the northeast Atlantic during the last glacial maximum: concordant assessment from archaeozoology and palaeotemperature reconstructions

Archaeozoological finds of the remains of marine and amphihaline fish from the Last Glacial Maximum (LGM) ca. 21 ka ago show evidence of very different species ranges compared to the present. We have shown how an ecological niche model (ENM) based on palaeoclimatic reconstructions of sea surface temperature and bathymetry can be used to effectively predict the spatial range of marine fish during the LGM. The results indicate that the ranges of marine fish species now in northwestern Europe were displaced significantly southwards from the modern distribution, challenging an existing paradigm of marine glacial refugia. The model presents strong evidence that there was an invasion of important fish through the Straits of Gibraltar in glacial times, where they were exploited by Palaeolithic human populations around the western Mediterranean Sea. The ENM results are important for ongoing studies of molecular ecology that aim to assess marine glacial refugia from the genetic structure of living populations, and they pose questions about the genetic identity of vanished marine populations during the LGM. Economically, the approach may be used to understand how the ranges of exploited fish species may be displaced with the future climate warming. The research presents a challenge for future archaeozoological work to delimit the glacial refugia and to verify palaeoclimatic reconstructions based on deep-sea core record

Three in one-multiple faunal elements within an endangered european butterfly species

Ice ages within Europe forced many species to retreat to refugia, of which three major biogeographic basic types can be distinguished: "Mediterranean", "Continental" and "Alpine / Arctic" species. However, this classification often fails to explain the complex phylogeography of European species with a wide range of latitudinal and altitudinal distribution. Hence, we tested for the possibility that all three mentioned faunal elements are represented within one species. Our data was obtained by scoring 1,307 Euphydryas aurinia individuals (46 European locations) for 17 allozyme loci, and sequencing a subset of 492 individuals (21 sites) for a 626 base pairs COI fragment. Genetic diversity indices, F statistics, hierarchical analyses of molecular variance, individual-based clustering, and networks were used to explore the phylogeographic patterns. The COI fragment represented 18 haplotypes showing a strong geographic structure. All but one allozyme loci analysed were polymorphic with a mean F-ST of 0.20, supporting a pronounced among population structure. Interpretation of both genetic marker systems, using several analytical tools, calls for the recognition of twelve genetic groups. These analyses consistently distinguished different groups in Iberia (2), Italy, Provence, Alps (3), Slovenia, Carpathian Basin, the lowlands of West and Central Europe as well as Estonia, often with considerable additional substructures. The genetic data strongly support the hypothesis that E. aurinia survived the last glaciation in Mediterranean, extra-Mediterranean and perialpine refugia. It is thus a rare example of a model organism that combines attributes of faunal elements from all three of these sources. The observed differences between allozymes and mtDNA most likely result from recent introgression of mtDNA into nuclear allozyme groups. Our results indicate discrepancies with the morphologically-based subspecies models, underlining the need to revise the current taxonomy.Estonian targeted financing project [Sf0180122s08]; DFG graduate school [1319]; [Pest-C/MAR/LA0015/2011]info:eu-repo/semantics/publishedVersio

Plant glacial refugia in Europe

Izmjene glacijala i interglacijala u razdoblju Kvartara utjecale su na geografsku rasprostranjenost vrsta u Europi danas. Vrste koje su bile bolje prilagođene na umjerenu klimu bile su ograničene na područja refugija u vrijeme glacijala dok su vrste koje su bile prilagođene na hladnu klimu bile ograničene na područja refugija u interglacijalima. Poseban utjecaj na geografski raspon vrsta imao je posljednji glacijalni maksimum. Glacijalni refugiji nalazili su se na jugu Europe (Apeninskom poluotoku, Pirinejskom poluotoku i Balkanu). Postojanje kriptičnih refugija za vrste umjerene klime koji su se nalazili sjevernije još uvijek je predmet mnogih znanstvenih rasprava. U ovom radu pokazana je mogućnost postojanja takvih refugija na primjeru obične bukve (Fagus sylvatica) i divlje jabuke (Malus sylvestris). Također, cilj ovog rada bio je dati uvid u kompleksne procese koji su se događali u refugijima tijekom posljednjeg glacijanog maksimuma i procese kolonizacije koji su uslijedili nakon njega. Naglašena je uloga glacijalnih refugija kao žarišta genske raznolikosti Europe te potreba za zaštitom tih područja. Potrebna su daljnja, detaljnija paleobotanička i genetička istraživanja kako bi se dobio detaljniji uvid u prošlost biljnih i drugih vrsta na Europskom kontinentu. Razumijevanje prošlosti glacijalnih refugija omogućit će bolja predviđanja utjecaja trenutnih klimatskih promjena na živi svijet.Changes between glacial and interglacial periods in Quaternary have influenced the geographical species distribution in Europe. Temperate-adapted species were confined to refugial areas during glacial periods while cold-adapted species were confined to refugial areas during the interglacial. Last glacial maximum had a significant influence on the today’s species distribution. Glacial refugia were located in the Iberian, Italian and Balkan Peninsula. The existence of cryptic, more northern glacial refugia for temperate species is still questioned by many scientists. In this paper, the possibility of existence for such refugia is demonstrated on examples of European beech (Fagus sylvatica) and wild apple (Malus sylvestris). The aim of this review was to give insights on the complex processes that happened in the glacial refugia during last glacial maximum and postglacial colonization. The role of glacial refugia as “hotspots” of genetic diversity in Europe and the need for their protection has been emphasized. Further paleobotanical and genetic research is needed to get a more precise insight in plant and other species’ history on European continent. Better understanding of the history of glacial refugia could give better predictions on influence of current climatic change on today’s species

Climatic niche and neutral genetic diversity of the six Iberian pine species: a retrospective and prospective view

Quaternary climatic fluctuations have left contrasting historical footprints on the neutral genetic diversity patterns of existing populations of different tree species. We should expect the demography, and consequently the neutral genetic structure, of taxa less tolerant to particular climatic extremes to be more sensitive to long-term climate fluctuations. We explore this hypothesis here by sampling all six pine species found in the Iberian Peninsula (2464 individuals, 105 populations), using a common set of chloroplast microsatellite markers, and by looking at the association between neutral genetic diversity and species-specific climatic requirements. We found large variation in neutral genetic diversity and structure among Iberian pines, with cold-enduring mountain species (Pinus uncinata, P. sylvestris and P. nigra) showing substantially greater diversity than thermophilous taxa (P. pinea and P. halepensis). Within species, we observed a significant positive correlation between population genetic diversity and summer precipitation for some of the mountain pines. The observed pattern is consistent with the hypotheses that: (i) more thermophilous species have been subjected to stronger demographic fluctuations in the past, as a consequence of their maladaptation to recurrent glacial cold stages; and (ii) altitudinal migrations have allowed the maintenance of large effective population sizes and genetic variation in cold-tolerant species, especially in more humid regions. In the light of these results and hypotheses, we discuss some potential genetic consequences of impending climate change

Steppes, savannahs, forests and phytodiversity reservoirs during the Pleistocene in the Iberian Peninsula

A palaeobotanical analysis of the Pleistocene floras and vegetation in the Iberian Peninsula shows the existence of patched landscapes with Pinus woodlands, deciduous and mixed forests, parklands (savannah-like), shrublands, steppes and grasslands. Extinctions of Arctotertiary woody taxa are recorded during the Early and Middle Pleistocene, but glacial refugia facilitated the survival of a number of temperate, Mediterranean and Ibero-North African woody angiosperms. The responses of Iberian vegetation to climatic changes during the Pleistocene have been spatially and temporarily complex, including rapid changes of vegetation in parallel to orbital and suborbital variability, and situations of multi-centennial resilience or accommodation to climatic changes. Regional characteristics emerged as soon as for the Middle Pleistocene, if not earlier: Ericaceae in the Atlantic coast indicating wetter climate, thermo-mediterranean elements in the south as currently, and broad-leaf trees in the northeastern. Overall, steppe landscapes and open Pinus woodlands prevailed over many continental regions during the cold spells of the Late Pleistocene. The maintenance of a high phytodiversity during the glacials was linked to several refuge zones in the coastal shelves of the Mediterranean and intramountainous valleys. Northern Iberia, especially on coastal areas, was also patched with populations of tree species, and this is not only documented by palaeobotanical data (pollen, charcoal) but also postulated by phylogeographical models

Detecting glacial refugia in the Southern Ocean

Throughout the Quaternary, the continental‐based Antarctic ice sheets expanded and contracted repeatedly. Evidence suggests that during glacial maxima, grounded ice eliminated most benthic (bottom‐dwelling) fauna across the Antarctic continental shelf. However, paleontological and molecular evidence indicates most extant Antarctica benthic taxa have persisted in situ throughout the Quaternary. Where and how the Antarctic benthic fauna survived throughout repeated glacial maxima remain mostly hypothesised. If understood, this would provide valuable insights into the ecology and evolution of Southern Ocean biota over geological timescales. Here we synthesised and appraised recent studies and presented an approach to demonstrate how genetic data can be effective in identifying where and how Antarctic benthic fauna survived glacial periods. We first examined the geological and ecological evidence for how glacial periods influenced past species demography in order to provide testable frameworks for future studies. We outlined past ice‐free areas from Antarctic ice sheet reconstructions that could serve as glacial refugia and discussed how benthic fauna with pelagic or non‐pelagic dispersal strategies moved into and out of glacial refugia. We also reviewed current molecular studies and collated proposed locations of Southern Ocean glacial refugia on the continental shelf around Antarctica, in the deep sea, and around sub‐Antarctic islands. Interestingly, the proposed glacial refugia based on molecular data generally do not correspond to the ice‐free areas identified by Antarctic ice sheet reconstructions. The potential biases in sampling and in the choice of molecular markers in current literature are discussed, along with the future directions for employing testable frameworks and genomic methods in Southern Ocean molecular studies. Continued data syntheses will elucidate greater understanding of where and how Southern Ocean benthic fauna persisted throughout glacial periods and provide insights into their resilience against climate changes in the future

Progress in palynology of the Gelasian–Calabrian Stages in Europe: Ten messages

Europe has at present the most extensive network of palynological sites covering the Late Pliocene and the Early Pleistocene or roughly the Gelasian-Calabrian Stages. This paper covers ten points of recent progress in the palynology of this time period: 1) the contribution of palynology to truly global stratigraphy, 2) the existence and steps of vegetation succession after a glacial period, 3) the causes for the disappearance from Europe of some taxa, 4) the location and the types of vegetation refugia, 5) the causes of the low arboreal pollen representation in glacial times, 6) the extent of extreme glacial conditions, 7) the input of long marine records to short terrestrial ones, 8-9) cyclopalynostratigraphy for wiggle matching dating and duration estimations and, finally, 10) short glacial periods and long interglacial ones in an obliquity-forced climate