3,475 research outputs found
Domain Growth Kinetics in a Cell-sized Liposome
We investigated the kinetics of domain growth on liposomes consisting of a
ternary mixture (unsaturated phospholipid, saturated phospholipid, and
cholesterol) by temperature jump. The domain growth process was monitored by
fluorescence microscopy, where the growth was mediated by the fusion of domains
through the collision. It was found that an average domain size r develops with
time t as r ~ t^0.15, indicating that the power is around a half of the
theoretical expectation deduced from a model of Brownian motion on a
2-dimensional membrane. We discuss the mechanism of the experimental scaling
behavior by considering the elasticity of the membrane
Jet SIFT-ing: a new scale-invariant jet clustering algorithm for the substructure era
We introduce a new jet clustering algorithm named SIFT (Scale-Invariant
Filtered Tree) that maintains the resolution of substructure for collimated
decay products at large boosts. The scale-invariant measure combines properties
of kT and anti-kT by preferring early association of soft radiation with a
resilient hard axis, while avoiding the specification of a fixed cone size.
Integrated filtering and variable-radius isolation criteria block assimilation
of soft wide-angle radiation and provide a halting condition. Mutually hard
structures are preserved to the end of clustering, automatically generating a
tree of subjet axis candidates. Excellent object identification and kinematic
reconstruction for multi-pronged resonances are realized across more than an
order of magnitude in transverse energy. The clustering measure history
facilitates high-performance substructure tagging, which we quantify with the
aid of supervised machine learning. These properties suggest that SIFT may
prove to be a useful tool for the continuing study of jet substructure.Comment: 29 pages, 23 figures, 5 tables, and 5 films (ancillary files
Fission of a multiphase membrane tube
A common mechanism for intracellular transport is the use of controlled
deformations of the membrane to create spherical or tubular buds. While the
basic physical properties of homogeneous membranes are relatively well-known,
the effects of inhomogeneities within membranes are very much an active field
of study. Membrane domains enriched in certain lipids in particular are
attracting much attention, and in this Letter we investigate the effect of such
domains on the shape and fate of membrane tubes. Recent experiments have
demonstrated that forced lipid phase separation can trigger tube fission, and
we demonstrate how this can be understood purely from the difference in elastic
constants between the domains. Moreover, the proposed model predicts timescales
for fission that agree well with experimental findings
ADAMTSL2 gene variant in patients with features of autosomal dominant connective tissue disorders
This is the peer reviewed version of the following article: Steinle, J, Hossain, WA, Lovell, S, Veatch, OJ, Butler, MG. ADAMTSL2 gene variant in patients with features of autosomal dominant connective tissue disorders. Am J Med Genet Part A. 2021; 185A: 743– 752. https://doi.org/10.1002/ajmg.a.62030, which has been published in final form at https://doi.org/10.1002/ajmg.a.62030. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions. This article may not be enhanced, enriched or otherwise transformed into a derivative work, without express permission from Wiley or by statutory rights under applicable legislation. Copyright notices must not be removed, obscured or modified. The article must be linked to Wiley’s version of record on Wiley Online Library and any embedding, framing or otherwise making available the article or pages thereof by third parties from platforms, services and websites other than Wiley Online Library must be prohibited.Ehlers-Danlos syndrome (EDS) consists of a heterogeneous group of genetically inherited connective tissue disorders. A family with three affected members over two generations with features of Dermatosparaxic EDS (dEDS) autosomal dominant transmission was reported by Desai et al. and having a heterozygous nonsynonymous missense variant of ADAMTSL2 (c.1261G > A; p. Gly421Ser). Variation in this gene is also reported to cause autosomal recessive geleophysic dysplasia. We report five unrelated patients with the Gly421Ser variant identified from a large series of patients presenting with features of connective tissue disorders, each with a positive family history consistent with autosomal dominant transmission. Clinical features of a connective tissue disorder included generalized joint hypermobility and pain with fragility of internal and external tissues including of skin, dura, and arteries. Overall, our analyses including bioinformatics, protein modeling, and gene-protein interactions with the cases described would add evidence for the Gly421Ser variant in ADAMTSL2 as causative for variable expressivity of autosomal dominant connective tissue disorders
Lateral phase separation in mixtures of lipids and cholesterol
In an effort to understand "rafts" in biological membranes, we propose phenomenological models for saturated and unsaturated lipid mixtures, and lipid-cholesterol mixtures. We consider simple couplings between the local composition and internal membrane structure, and their influence on transitions between liquid and gel membrane phases. Assuming that the gel transition temperature of the saturated lipid is shifted by the presence of the unsaturated lipid, and that cholesterol acts as an external field on the chain melting transition, a variety of phase diagrams are obtained. The phase diagrams for binary mixtures of saturated/unsaturated lipids and lipid/cholesterol are in semi-quantitative agreement with the experiments. Our results also apply to regions in the ternary phase diagram of lipid/lipid/cholesterol systems
Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting
We present an analytical method to quantify clustering in super-resolution
localization images of static surfaces in two dimensions. The method also
describes how over-counting of labeled molecules contributes to apparent
self-clustering and how the effective lateral resolution of an image can be
determined. This treatment applies to clustering of proteins and lipids in
membranes, where there is significant interest in using super-resolution
localization techniques to probe membrane heterogeneity. When images are
quantified using pair correlation functions, the magnitude of apparent
clustering due to over-counting will vary inversely with the surface density of
labeled molecules and does not depend on the number of times an average
molecule is counted. Over-counting does not yield apparent co-clustering in
double label experiments when pair cross-correlation functions are measured. We
apply our analytical method to quantify the distribution of the IgE receptor
(Fc{\epsilon}RI) on the plasma membranes of chemically fixed RBL-2H3 mast cells
from images acquired using stochastic optical reconstruction microscopy (STORM)
and scanning electron microscopy (SEM). We find that apparent clustering of
labeled IgE bound to Fc{\epsilon}RI detected with both methods arises from
over-counting of individual complexes. Thus our results indicate that these
receptors are randomly distributed within the resolution and sensitivity limits
of these experiments.Comment: 22 pages, 5 figure
Data and Safety Monitoring Boards: Some Enduring Questions
Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/75571/1/j.1748-720X.2009.00410.x.pd
Molecular motors robustly drive active gels to a critically connected state
Living systems often exhibit internal driving: active, molecular processes
drive nonequilibrium phenomena such as metabolism or migration. Active gels
constitute a fascinating class of internally driven matter, where molecular
motors exert localized stresses inside polymer networks. There is evidence that
network crosslinking is required to allow motors to induce macroscopic
contraction. Yet a quantitative understanding of how network connectivity
enables contraction is lacking. Here we show experimentally that myosin motors
contract crosslinked actin polymer networks to clusters with a scale-free size
distribution. This critical behavior occurs over an unexpectedly broad range of
crosslink concentrations. To understand this robustness, we develop a
quantitative model of contractile networks that takes into account network
restructuring: motors reduce connectivity by forcing crosslinks to unbind.
Paradoxically, to coordinate global contractions, motor activity should be low.
Otherwise, motors drive initially well-connected networks to a critical state
where ruptures form across the entire network.Comment: Main text: 21 pages, 5 figures. Supplementary Information: 13 pages,
8 figure
Training and Onboarding initiatives in High Energy Physics experiments
In this paper we document the current analysis software training and
onboarding activities in several High Energy Physics (HEP) experiments: ATLAS,
CMS, LHCb, Belle II and DUNE. Fast and efficient onboarding of new
collaboration members is increasingly important for HEP experiments as analyses
and the related software become ever more complex with growing datasets. A
meeting series was held by the HEP Software Foundation (HSF) in 2022 for
experiments to showcase their initiatives. Here we document and analyse these
in an attempt to determine a set of key considerations for future experiments
Measurement of the cross-section and charge asymmetry of bosons produced in proton-proton collisions at TeV with the ATLAS detector
This paper presents measurements of the and cross-sections and the associated charge asymmetry as a
function of the absolute pseudorapidity of the decay muon. The data were
collected in proton--proton collisions at a centre-of-mass energy of 8 TeV with
the ATLAS experiment at the LHC and correspond to a total integrated luminosity
of 20.2~\mbox{fb^{-1}}. The precision of the cross-section measurements
varies between 0.8% to 1.5% as a function of the pseudorapidity, excluding the
1.9% uncertainty on the integrated luminosity. The charge asymmetry is measured
with an uncertainty between 0.002 and 0.003. The results are compared with
predictions based on next-to-next-to-leading-order calculations with various
parton distribution functions and have the sensitivity to discriminate between
them.Comment: 38 pages in total, author list starting page 22, 5 figures, 4 tables,
submitted to EPJC. All figures including auxiliary figures are available at
https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/STDM-2017-13
- …