Estimating body mass of sperm whales from aerial photographs

We wish to thank Fundación Biodiversidad for supporting COLCA project and all the ecovolunteers involved in the fieldwork of the Balearic Sperm Whale project. We are grateful to OceanCare (Switzerland) for their continuous support of the sperm whale research and conservation activities of the PCRI since 2008 and to Prof. Kostas Kostarelos and the University of Manchester for organizing the crowd-funding project “Nanowhales” to cofund the research expedition of 2019 along the Hellenic Trench. This paper represents HIMB and SOEST contribution nos. 1903 and 11568, respectively.Body mass is a fundamental feature of animal physiology. Although sperm whales (Physeter macrocephalus) are the largest toothed predators on earth, body mass is seldom included in studies of their ecophysiology and bioenergetics due to the inherent difficulties of obtaining direct measurements. We used UAV‐photogrammetry to estimate the weight of free‐ranging sperm whales. Aerial photographs (23 calves, 11 juveniles, 55 nonmother adults, 13 mothers) were collected in the Eastern Caribbean and Mediterranean Sea during 2017–2020. Body length, widths, and heights (dorso‐ventral distance at 5% increments) were measured from dorsal and lateral photographs, while body volume was calculated using an elliptical model. Volume varied noticeably (12.01 ± 4.79 m3) in larger animals (>8 m), indicating fluctuations in body condition of adults and mothers. Volume was converted to mass, using tissue‐density estimates from catch data, animal‐borne tags, and body‐tissue composition. Average total body density ranged from 834 to 1,003 kg/m3, while the weight predictions matched with existing measurements and weight‐length relationships. Our body‐mass models can be used to study sperm whale bioenergetics, including inter‐ and intraseasonal variations in body condition, somatic growth, metabolic rates, and cost of reproduction.Publisher PDFPeer reviewe

Quantifying the age structure of free-ranging delphinid populations : testing the accuracy of Unoccupied Aerial System photogrammetry

This study was funded by NOAA-PIFSC and RCUH JIMAR (NA19NMF4720181, NA16NMF4320058), CIMAR (NA21NMF4320043), and the Office of Naval Research (N000142012624).Understanding the population health status of long-lived and slow-reproducing species is critical for their management. However, it can take decades with traditional monitoring techniques to detect population-level changes in demographic parameters. Early detection of the effects of environmental and anthropogenic stressors on vital rates would aid in forecasting changes in population dynamics and therefore inform management efforts. Changes in vital rates strongly correlate with deviations in population growth, highlighting the need for novel approaches that can provide early warning signs of population decline (e.g., changes in age structure). We tested a novel and frequentist approach, using Unoccupied Aerial System (UAS) photogrammetry, to assess the population age structure of small delphinids. First, we measured the precision and accuracy of UAS photogrammetry in estimating total body length (TL) of trained bottlenose dolphins (Tursiops truncatus). Using a log-transformed linear model, we estimated TL using the blowhole to dorsal fin distance (BHDF) for surfacing animals. To test the performance of UAS photogrammetry to age-classify individuals, we then used length measurements from a 35-year dataset from a free-ranging bottlenose dolphin community to simulate UAS estimates of BHDF and TL. We tested five age classifiers and determined where young individuals (Publisher PDFPeer reviewe

Two novel human cytomegalovirus NK cell evasion functions target MICA for lysosomal degradation

NKG2D plays a major role in controlling immune responses through the regulation of natural killer (NK) cells, αβ and γδ T-cell function. This activating receptor recognizes eight distinct ligands (the MHC Class I polypeptide-related sequences (MIC) A andB, and UL16-binding proteins (ULBP)1–6) induced by cellular stress to promote recognition cells perturbed by malignant transformation or microbial infection. Studies into human cytomegalovirus (HCMV) have aided both the identification and characterization of NKG2D ligands (NKG2DLs). HCMV immediate early (IE) gene up regulates NKGDLs, and we now describe the differential activation of ULBP2 and MICA/B by IE1 and IE2 respectively. Despite activation by IE functions, HCMV effectively suppressed cell surface expression of NKGDLs through both the early and late phases of infection. The immune evasion functions UL16, UL142, and microRNA(miR)-UL112 are known to target NKG2DLs. While infection with a UL16 deletion mutant caused the expected increase in MICB and ULBP2 cell surface expression, deletion of UL142 did not have a similar impact on its target, MICA. We therefore performed a systematic screen of the viral genome to search of addition functions that targeted MICA. US18 and US20 were identified as novel NK cell evasion functions capable of acting independently to promote MICA degradation by lysosomal degradation. The most dramatic effect on MICA expression was achieved when US18 and US20 acted in concert. US18 and US20 are the first members of the US12 gene family to have been assigned a function. The US12 family has 10 members encoded sequentially through US12–US21; a genetic arrangement, which is suggestive of an ‘accordion’ expansion of an ancestral gene in response to a selective pressure. This expansion must have be an ancient event as the whole family is conserved across simian cytomegaloviruses from old world monkeys. The evolutionary benefit bestowed by the combinatorial effect of US18 and US20 on MICA may have contributed to sustaining the US12 gene family

Altimetry for the future: Building on 25 years of progress

In 2018 we celebrated 25 years of development of radar altimetry, and the progress achieved by this methodology in the fields of global and coastal oceanography, hydrology, geodesy and cryospheric sciences. Many symbolic major events have celebrated these developments, e.g., in Venice, Italy, the 15th (2006) and 20th (2012) years of progress and more recently, in 2018, in Ponta Delgada, Portugal, 25 Years of Progress in Radar Altimetry. On this latter occasion it was decided to collect contributions of scientists, engineers and managers involved in the worldwide altimetry community to depict the state of altimetry and propose recommendations for the altimetry of the future. This paper summarizes contributions and recommendations that were collected and provides guidance for future mission design, research activities, and sustainable operational radar altimetry data exploitation. Recommendations provided are fundamental for optimizing further scientific and operational advances of oceanographic observations by altimetry, including requirements for spatial and temporal resolution of altimetric measurements, their accuracy and continuity. There are also new challenges and new openings mentioned in the paper that are particularly crucial for observations at higher latitudes, for coastal oceanography, for cryospheric studies and for hydrology. The paper starts with a general introduction followed by a section on Earth System Science including Ocean Dynamics, Sea Level, the Coastal Ocean, Hydrology, the Cryosphere and Polar Oceans and the ‘‘Green” Ocean, extending the frontier from biogeochemistry to marine ecology. Applications are described in a subsequent section, which covers Operational Oceanography, Weather, Hurricane Wave and Wind Forecasting, Climate projection. Instruments’ development and satellite missions’ evolutions are described in a fourth section. A fifth section covers the key observations that altimeters provide and their potential complements, from other Earth observation measurements to in situ data. Section 6 identifies the data and methods and provides some accuracy and resolution requirements for the wet tropospheric correction, the orbit and other geodetic requirements, the Mean Sea Surface, Geoid and Mean Dynamic Topography, Calibration and Validation, data accuracy, data access and handling (including the DUACS system). Section 7 brings a transversal view on scales, integration, artificial intelligence, and capacity building (education and training). Section 8 reviews the programmatic issues followed by a conclusion

Altimetry for the future: building on 25 years of progress

In 2018 we celebrated 25 years of development of radar altimetry, and the progress achieved by this methodology in the fields of global and coastal oceanography, hydrology, geodesy and cryospheric sciences. Many symbolic major events have celebrated these developments, e.g., in Venice, Italy, the 15th (2006) and 20th (2012) years of progress and more recently, in 2018, in Ponta Delgada, Portugal, 25 Years of Progress in Radar Altimetry. On this latter occasion it was decided to collect contributions of scientists, engineers and managers involved in the worldwide altimetry community to depict the state of altimetry and propose recommendations for the altimetry of the future. This paper summarizes contributions and recommendations that were collected and provides guidance for future mission design, research activities, and sustainable operational radar altimetry data exploitation. Recommendations provided are fundamental for optimizing further scientific and operational advances of oceanographic observations by altimetry, including requirements for spatial and temporal resolution of altimetric measurements, their accuracy and continuity. There are also new challenges and new openings mentioned in the paper that are particularly crucial for observations at higher latitudes, for coastal oceanography, for cryospheric studies and for hydrology. The paper starts with a general introduction followed by a section on Earth System Science including Ocean Dynamics, Sea Level, the Coastal Ocean, Hydrology, the Cryosphere and Polar Oceans and the “Green” Ocean, extending the frontier from biogeochemistry to marine ecology. Applications are described in a subsequent section, which covers Operational Oceanography, Weather, Hurricane Wave and Wind Forecasting, Climate projection. Instruments’ development and satellite missions’ evolutions are described in a fourth section. A fifth section covers the key observations that altimeters provide and their potential complements, from other Earth observation measurements to in situ data. Section 6 identifies the data and methods and provides some accuracy and resolution requirements for the wet tropospheric correction, the orbit and other geodetic requirements, the Mean Sea Surface, Geoid and Mean Dynamic Topography, Calibration and Validation, data accuracy, data access and handling (including the DUACS system). Section 7 brings a transversal view on scales, integration, artificial intelligence, and capacity building (education and training). Section 8 reviews the programmatic issues followed by a conclusion

The collegiate church Saint-Julien at Brioude (Haute-Loire) : Researches on links between church architecture, its iconographic layout and the liturgy of a canonical community in the Middle Ages

Cette thèse se constitue de deux analyses statistiques qui sont mises au service de l’étude de l’identité culturelle de Saint-Julien de Brioude. Riche d’un luxuriant passé, la compagnie de Brioude entretenait un réseau de relations complexes. Les arts et la liturgie ont constitué notre support pour l’étude identitaire du chapitre. L’étude du bréviaire brivadois nous a permis de montrer l’originalité de la liturgie brivadoise. Cette liturgie n’était pas aussi clermontoise qu’on le présumait jusqu’à présent. Née d’un métissage mêlant la tradition liturgique aquitaine et vellave, la liturgie de Brioude avait été dotée de pièces de chants et d’oraisons propres. La mise en scène spatiale des reliques participait à la typicité de la collégiale que les pèlerins visitaient. À côté du tombeau de Julien, d’autres corps de saints et des reliques faisaient l’objet de dévotions. Le programme sculpté de la collégiale avait été pensé en deux temps. Souvent fidèlement liés aux sujets iconographiques utilisés dans le diocèse de Clermont, les chapiteaux de Brioude avaient été agencés en fonction des zones divisant l’espace ecclésial. Ces zones gigognes se voisinaient en faisant concurrencer l’agencement des reliques, du mobilier et des images. Le chevet faisait dialoguer l’iconographie du Saint-Sépulcre et des croisades avec le tombeau-reliquaire de Julien et les autels secondaires. Les sculptures étaient utilisées comme de véritables signalétiques s’animant autour du drame liturgique. Les images participaient à la constitution d’un espace mémoriel participant à la mémorisation liturgique de l’histoire.Cette étude offre des perspectives dépassant le cadre de la monographie. Liturgie et arts peuvent fournir des éléments de compréhension concrets à propos des échanges culturels et des aménagements de l’espace ecclésial. L’origine familiale des chanoines avait déterminée cette zone (le Brivadois) située à la confluence de l’Aquitaine auvergnate et du Velay (zone tampon avec l’Empire). Le chapitre de Brioude placé au milieu des deux, sans être central, en avait tiré les bénéfices culturels et un rayonnement propre. Le chapitre de Brioude avait ainsi pu façonner sa collégiale afin de célébrer la compagnie canoniale elle-même et le saint dont elle détenait les reliques. Attirer à elle les foules permettait à la compagnie aussi bien de faire perdurer la mémoire du saint patron que de leur procurer les ressources essentielles à leur fonctionnement. La collégiale était réalisée comme un marqueur du paysage déterminant une identité architecturale attractive.This thesis is made up of two statistical analyses which are at the service of the study of Saint-Julien de Brioude’s cultural identity. Having had a lush history, the Brioude Company kept a complex web of relationships. Both, art and liturgy, were the frame for the identity study of this chapter. The study of the Brivadois breviary proved how unique the Brivadois liturgy was. Unlike what was thought at first, such liturgy was not as close as to that of Clermont-Ferrand. Born from the blending of liturgical tradition from Aquitaine and Velay, the Brivadois liturgy was endowed with singing pieces and specific orations. The spatial staging of the relics partook of the collegiate’s specificity the pilgrims visited. Next to Julien’s gravestone, other Saints’ bodies and relics were subjected to devotions.The collegiate’s sculpted program was designed in two times. As they were often faithfully linked with the iconographic subjects used in Clermont’s diocese, Brioude’s capitals were put together in accordance with the areas dividing the ecclesial space. These nested areas were next to one another and highlighted the differences between the relics, the furniture and the images. The chevet intertwined Saint-Sépulcre’s iconography, along with its Crusades, with Julien’s reliquary gravestone and the secondary altars. The sculptures were used as genuine signage livened up around the liturgical tragedy. The images took part in the setting up of history’s liturgical memorial space.This study gives new perspectives which go beyond the monographic frame. Liturgy and arts can provide us with tangible understanding elements regarding the cultural exchanges and the layout of the ecclesial space. The canon’s familial origin determined this area (the Brivadois) located at the confluence of Auvergne’s Aquitaine and the Velay (buffer zone with the Empire). From the Brioude chapter located between these two, without being central, it extracted the cultural benefits as well as a very own standing. The Brioude chapter thus managed to shape its collegiate so as to celebrate the canonical company itself and the Saint whom she possessed the relics from. Attracting the crowd enabled the company to carry own the patron Saint’s memory and to provide themselves with the essential resources to make it operate. The collegiate was undertaken as a landscape’s landmark determining an attractive architectural identity

Images et espaces de la collégiale

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La collégiale de Saint-Julien de Brioude (Haute-Loire) : Recherches sur les liens entre l’architecture ecclésiale, son agencement iconographique, et la liturgie d’une communauté canoniale au Moyen Âge

This thesis is made up of two statistical analyses which are at the service of the study of Saint-Julien de Brioude’s cultural identity. Having had a lush history, the Brioude Company kept a complex web of relationships. Both, art and liturgy, were the frame for the identity study of this chapter. The study of the Brivadois breviary proved how unique the Brivadois liturgy was. Unlike what was thought at first, such liturgy was not as close as to that of Clermont-Ferrand. Born from the blending of liturgical tradition from Aquitaine and Velay, the Brivadois liturgy was endowed with singing pieces and specific orations. The spatial staging of the relics partook of the collegiate’s specificity the pilgrims visited. Next to Julien’s gravestone, other Saints’ bodies and relics were subjected to devotions.The collegiate’s sculpted program was designed in two times. As they were often faithfully linked with the iconographic subjects used in Clermont’s diocese, Brioude’s capitals were put together in accordance with the areas dividing the ecclesial space. These nested areas were next to one another and highlighted the differences between the relics, the furniture and the images. The chevet intertwined Saint-Sépulcre’s iconography, along with its Crusades, with Julien’s reliquary gravestone and the secondary altars. The sculptures were used as genuine signage livened up around the liturgical tragedy. The images took part in the setting up of history’s liturgical memorial space.This study gives new perspectives which go beyond the monographic frame. Liturgy and arts can provide us with tangible understanding elements regarding the cultural exchanges and the layout of the ecclesial space. The canon’s familial origin determined this area (the Brivadois) located at the confluence of Auvergne’s Aquitaine and the Velay (buffer zone with the Empire). From the Brioude chapter located between these two, without being central, it extracted the cultural benefits as well as a very own standing. The Brioude chapter thus managed to shape its collegiate so as to celebrate the canonical company itself and the Saint whom she possessed the relics from. Attracting the crowd enabled the company to carry own the patron Saint’s memory and to provide themselves with the essential resources to make it operate. The collegiate was undertaken as a landscape’s landmark determining an attractive architectural identity.Cette thèse se constitue de deux analyses statistiques qui sont mises au service de l’étude de l’identité culturelle de Saint-Julien de Brioude. Riche d’un luxuriant passé, la compagnie de Brioude entretenait un réseau de relations complexes. Les arts et la liturgie ont constitué notre support pour l’étude identitaire du chapitre. L’étude du bréviaire brivadois nous a permis de montrer l’originalité de la liturgie brivadoise. Cette liturgie n’était pas aussi clermontoise qu’on le présumait jusqu’à présent. Née d’un métissage mêlant la tradition liturgique aquitaine et vellave, la liturgie de Brioude avait été dotée de pièces de chants et d’oraisons propres. La mise en scène spatiale des reliques participait à la typicité de la collégiale que les pèlerins visitaient. À côté du tombeau de Julien, d’autres corps de saints et des reliques faisaient l’objet de dévotions. Le programme sculpté de la collégiale avait été pensé en deux temps. Souvent fidèlement liés aux sujets iconographiques utilisés dans le diocèse de Clermont, les chapiteaux de Brioude avaient été agencés en fonction des zones divisant l’espace ecclésial. Ces zones gigognes se voisinaient en faisant concurrencer l’agencement des reliques, du mobilier et des images. Le chevet faisait dialoguer l’iconographie du Saint-Sépulcre et des croisades avec le tombeau-reliquaire de Julien et les autels secondaires. Les sculptures étaient utilisées comme de véritables signalétiques s’animant autour du drame liturgique. Les images participaient à la constitution d’un espace mémoriel participant à la mémorisation liturgique de l’histoire.Cette étude offre des perspectives dépassant le cadre de la monographie. Liturgie et arts peuvent fournir des éléments de compréhension concrets à propos des échanges culturels et des aménagements de l’espace ecclésial. L’origine familiale des chanoines avait déterminée cette zone (le Brivadois) située à la confluence de l’Aquitaine auvergnate et du Velay (zone tampon avec l’Empire). Le chapitre de Brioude placé au milieu des deux, sans être central, en avait tiré les bénéfices culturels et un rayonnement propre. Le chapitre de Brioude avait ainsi pu façonner sa collégiale afin de célébrer la compagnie canoniale elle-même et le saint dont elle détenait les reliques. Attirer à elle les foules permettait à la compagnie aussi bien de faire perdurer la mémoire du saint patron que de leur procurer les ressources essentielles à leur fonctionnement. La collégiale était réalisée comme un marqueur du paysage déterminant une identité architecturale attractive

La liturgie de Saint-Julien de Brioude au Moyen Âge

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