Global Alfven Wave Heating of the Magnetosphere of Young Stars

Excitation of a Global Alfven wave (GAW) is proposed as a viable mechanism to explain plasma heating in the magnetosphere of young stars. The wave and basic plasma parameters are compatible with the requirement that the dissipation length of GAWs be comparable to the distance between the shocked region at the star's surface and the truncation region in the accretion disk. A two-fluid magnetohydrodynamic plasma model is used in the analysis. A current carrying filament along magnetic field lines acts as a waveguide for the GAW. The current in the filament is driven by plasma waves along the magnetic field lines and/or by plasma crossing magnetic field lines in the truncated region of the disk of the accreting plasma. The conversion of a small fraction of the kinetic energy into GAW energy is sufficient to heat the plasma filament to observed temperatures.Comment: Submitted to ApJ, aheatf.tex, 2 figure

The role of damped Alfven waves on magnetospheric accretion models of young stars

We examine the role of Alfven wave damping in heating the plasma in the magnetic funnels of magnetospheric accretion models of young stars. We study four different damping mechanisms of the Alfven waves: nonlinear, turbulent, viscous-resistive and collisional. Two different possible origins for the Alfven waves are discussed: 1) Alfven waves generated at the surface of the star by the shock produced by the infalling matter; and 2) Alfven waves generated locally in the funnel by the Kelvin-Helmholtz instability. We find that, in general, the damping lengths are smaller than the tube length. Since thermal conduction in the tube is not efficient, Alfven waves generated only at the star's surface cannot heat the tube to the temperatures necessary to fit the observations. Only for very low frequency Alfven waves ~10^{-5} the ion cyclotron frequency, is the viscous-resistive damping length greater than the tube length. In this case, the Alfven waves produced at the surface of the star are able to heat the whole tube. Otherwise, local production of Alfven waves is required to explain the observations. The turbulence level is calculated for different frequencies for optically thin and thick media. We find that turbulent velocities varies greatly for different damping mechanisms, reaching \~100 km s^{-1} for the collisional damping of small frequency waves.Comment: 29 pages, 12 figures, to appear in The Astrophysical Journa

Testing Models of Accretion-driven Coronal Heating and Stellar Wind Acceleration for T Tauri Stars

Classical T Tauri stars are pre-main-sequence objects that undergo simultaneous accretion, wind outflow, and coronal X-ray emission. The impact of plasma on the stellar surface from magnetospheric accretion streams is likely to be a dominant source of energy and momentum in the upper atmospheres of these stars. This paper presents a set of models for the dynamics and heating of three distinct regions on T Tauri stars that are affected by accretion: (1) the shocked plasmas directly beneath the magnetospheric accretion streams, (2) stellar winds that are accelerated along open magnetic flux tubes, and (3) closed magnetic loops that resemble the Sun's coronal active regions. For the loops, a self-consistent model of coronal heating was derived from numerical simulations of solar field-line tangling and turbulent dissipation. Individual models are constructed for the properties of 14 well-observed stars in the Taurus-Auriga star-forming region. Predictions for the wind mass loss rates are, on average, slightly lower than the observations, which suggests that disk winds or X-winds may also contribute to the measured outflows. For some of the stars, however, the modeled stellar winds do appear to contribute significantly to the measured mass fluxes. Predictions for X-ray luminosities from the shocks and loops are in general agreement with existing observations. The stars with the highest accretion rates tend to have X-ray luminosities dominated by the high-temperature (5-10 MK) loops. The X-ray luminosities for the stars having lower accretion rates are dominated by the cooler accretion shocks.Comment: 20 pages (emulateapj style), 13 figures, ApJ, in press (v. 706, December 1, 2009

' Lactobacillus fermentum ' 3872 genome sequencing reveals plasmid and chromosomal genes potentially involved in a probiotic activity.

In this report we describe a ' Lactobacillus fermentum ' 3872 plasmid (pLF3872) not previously found in any other strain of this species. The analysis of the complete sequence of this plasmid revealed the presence of a gene encoding a large collagen binding protein (CBP), as well as the genes responsible for plasmid maintenance and conjugation. Potential roles of CBP and a chromosomally encoded fibronectin-binding protein (FbpA) in probiotic activity are discussed

Respiration as a percentage of daily photosynthesis in whole plants is homeostatic at moderate, but not high, growth temperatures

• Here, we investigated the impact of temperature on the carbon economy of two Plantago species from contrasting habitats. • The lowland Plantago major and the alpine Plantago euryphylla were grown hydroponically at three constant temperatures: 13, 2

Rational design of glycomimetic compounds targeting the Saccharomyces cerevisiae transglycosylase Gas2

The transglycosylase Saccharomyces cerevisiae Gas2 (ScGas2) belongs to a large family of enzymes that are key players in yeast cell wall remodeling. Despite its biological importance, no studies on the synthesis of substrate-based compounds as potential inhibitors have been reported. We have synthesized a series of docking-guided glycomimetics that were evaluated by fluorescence spectroscopy and saturation-transfer difference (STD) NMR experiments, revealing that a minimum of three glucose units linked via a β-(1,3) linkage are required for achieving molecular recognition at the binding donor site. The binding mode of our compounds is further supported by STD-NMR experiments using the active site-mutants Y107Q and Y244Q. Our results are important for both understanding of ScGas2-substrate interactions and setting up the basis for future design of glycomimetics as new antifungal agents.This study was supported by the Ministerio de Economía y Competitividad (MINECO) and FEDER Program (Madrid, Spain, projects CTQ2013-44367-C2-1-P and CTQ2013-44367-C2-2-P), and the Gobierno de Aragón (Zaragoza, Spain. E. M. and J. V.G. thank MEC for FPU and FPI predoctoral grants, respectively. The ARAID Foundation (Gobierno de Aragón, Spain) is also acknowledged for financial support.Peer reviewe

A holin and an endopeptidase are essential for chitinolytic protein secretion in <i>Serratia marcescens</i>

Pathogenic bacteria adapt to their environment and manipulate the biochemistry of hosts by secretion of effector molecules. Serratia marcescens is an opportunistic pathogen associated with healthcare-acquired infections and is a prolific secretor of proteins, including three chitinases (ChiA, ChiB, and ChiC) and a chitin binding protein (Cbp21). In this work, genetic, biochemical, and proteomic approaches identified genes that were required for secretion of all three chitinases and Cbp21. A genetic screen identified a holin-like protein (ChiW) and a putative l-alanyl-d-glutamate endopeptidase (ChiX), and subsequent biochemical analyses established that both were required for nonlytic secretion of the entire chitinolytic machinery, with chitinase secretion being blocked at a late stage in the mutants. In addition, live-cell imaging experiments demonstrated bimodal and coordinated expression of chiX and chiA and revealed that cells expressing chiA remained viable. It is proposed that ChiW and ChiX operate in tandem as components of a protein secretion system used by gram-negative bacteria

Source of nitrogen associated with recovery of relative growth rate in Arabidopsis thaliana acclimated to sustained cold treatment

To determine (1) whether acclimation of carbon metabolism to low temperatures results in recovery of the relative growth rate (RGR) of plants in the cold and (2) the source of N underpinning cold-acclimation in Arabidopsis thaliana, we supplied plants with a nutrient solution labelled with 15N and subjected them to a temperature shift (23oC to 5oC). Whole-plant RGR of cold-treated plants was initially less than 30% of that of warm-maintained control plants. After 14 days, new leaves with a cold-acclimated phenotype emerged, with the RGR of cold-treated plants increasing by 50%; there was an associated recovery of root RGR and doubling of the net assimilation rate (NAR). The development of new tissues in the cold was supported initially by re-allocation of internal sources of N. In the longer-term, the majority (80%) of N in new leaves was derived from the external solution. Hence, both the nutrient status of the plant and the current availability of N from external sources are important in determining recovery of growth at low temperature. Collectively, our results reveal that both increased N use efficiency and increases in nitrogen content per se play a role in the recovery of carbon metabolism in the cold