259 research outputs found
Tubo-Ovarian Abscess Formation in Users of Intrauterine Devices Remote From Insertion: A Report of Three Cases
- Publication venue
- Hindawi Publishing Corporation
- Publication date
- 01/01/1996
- Field of study
Background: The association between tubo-ovarian abscess formation and the presence of an intrauterine
device (IUD) is well recognized. It has been suggested that the risk of upper-genital-tract
infection is highest during the immediate period following the insertion of an IUD, returning to
baseline by 5 months postinsertion. We present 3 cases of women who, 10β21 years after insertion of
their IUDs, developed tubo-ovarian abscesses that were not causally related to sexually transmitted
diseases (STDs) or actinomycetes
Recommended from our members
Calculation of the Thermal Footprint of Resonant Magnetic Perturbations in DIII-D
- Author
- Publication venue
- Lawrence Livermore National Laboratory
- Publication date
- 14/09/2007
- Field of study
The effect of resonant magnetic perturbations on heat transport in DIII-D H-mode plasmas has been calculated by combining the TRIP3D field-line tracing code with the E3D two-fluid transport code. Simulations show that the divertor heat flux distribution becomes non-axisymmetric because heat flux is efficiently guided to the divertor along the three-dimensional invariant manifolds of the magnetic field. Calculations demonstrate that heat flux is spread over a wider area of the divertor target, thereby reducing the peak heat flux delivered during steady-state operation. Filtered optical cameras have observed non-axisymmetric particle fluxes at the strike-point and Langmuir probes have observed non-axisymmetric floating potentials. On the other hand, the predicted magnitude of stochastic thermal transport is too large to match the pedestal plasma profiles measured by Thomson scattering and charge exchange recombination spectroscopy. The Braginskii thermal conductivity overestimates the expected heat transport in the pedestal because the mean free path is longer than estimates of the parallel thermal correlation length, and collisionless transport models are probably required for accurate description. However, even the collisionless estimates for electron thermal transport are too large by one to two orders of magnitude. Thus, it is likely that another mechanism such as rotational screening of resonant perturbations limits the stochastic region and reduces transport inside of the pedestal
Recommended from our members
Stochastic Transport Modeling of Resonant Magnetic Perturbations in DIII-D
- Author
- Publication venue
- Lawrence Livermore National Laboratory
- Publication date
- 01/06/2006
- Field of study
Three-dimensional two-fluid simulations of heat transport due to resonant magnetic perturbations of tokamaks have been computed by coupling the TRIP3D field line tracing code to the E3D edge transport code. The predicted electron temperature contours follow the new separatrix represented by the perturbed invariant manifold structure of the X-point in qualitative agreement with X-point TV observations. However, preliminary modeling predicts that the resulting stochastic heat transport is greater than that measured in low-collisionality ELM suppression experiments in DIII-D H-mode plasmas. While improved determination of transport coefficients is definitely required, possible explanations include plasma screening of resonant perturbations, invalid treatment of the edge as a fluid, or insufficient understanding of stochastic heat transport
Canadian Network for Mood and Anxiety Treatments (CANMAT) and International Society for Bipolar Disorders (ISBD) 2018 guidelines for the management of patients with bipolar disorder
- Author
- Alda Martin
- Beaulieu Serge
- Bond David J.
- Calabrese Joseph R.
- Frey Benicio N.
- Goldstein Benjamin I.
- Kanba Shigenobu
- Kapczinski Flavio
- Kennedy Sidney H.
- Kozicky Jan
- Lafer Beny
- Lam Raymond W.
- MacQueen Glenda
- McIntosh Diane
- McIntyre Roger S.
- Milev Roumen V.
- O\u27Donovan Claire
- Parikh Sagar V.
- Ravindran Arun
- Rej Soham
- Schaffer Ayal
- Sharma Verinder
- Suppes Trisha
- Vazquez Gustavo
- Vieta Eduard
- Yatham Lakshmi N.
- Publication venue
- Scholarship@Western
- Publication date
- 01/03/2018
- Field of study
The Canadian Network for Mood and Anxiety Treatments (CANMAT) previously published treatment guidelines for bipolar disorder in 2005, along with international commentaries and subsequent updates in 2007, 2009, and 2013. The last two updates were published in collaboration with the International Society for Bipolar Disorders (ISBD). These 2018 CANMAT and ISBD Bipolar Treatment Guidelines represent the significant advances in the field since the last full edition was published in 2005, including updates to diagnosis and management as well as new research into pharmacological and psychological treatments. These advances have been translated into clear and easy to use recommendations for first, second, and third- line treatments, with consideration given to levels of evidence for efficacy, clinical support based on experience, and consensus ratings of safety, tolerability, and treatment-emergent switch risk. New to these guidelines, hierarchical rankings were created for first and second- line treatments recommended for acute mania, acute depression, and maintenance treatment in bipolar I disorder. Created by considering the impact of each treatment across all phases of illness, this hierarchy will further assist clinicians in making evidence-based treatment decisions. Lithium, quetiapine, divalproex, asenapine, aripiprazole, paliperidone, risperidone, and cariprazine alone or in combination are recommended as first-line treatments for acute mania. First-line options for bipolar I depression include quetiapine, lurasidone plus lithium or divalproex, lithium, lamotrigine, lurasidone, or adjunctive lamotrigine. While medications that have been shown to be effective for the acute phase should generally be continued for the maintenance phase in bipolar I disorder, there are some exceptions (such as with antidepressants); and available data suggest that lithium, quetiapine, divalproex, lamotrigine, asenapine, and aripiprazole monotherapy or combination treatments should be considered first-line for those initiating or switching treatment during the maintenance phase. In addition to addressing issues in bipolar I disorder, these guidelines also provide an overview of, and recommendations for, clinical management of bipolar II disorder, as well as advice on specific populations, such as women at various stages of the reproductive cycle, children and adolescents, and older adults. There are also discussions on the impact of specific psychiatric and medical comorbidities such as substance use, anxiety, and metabolic disorders. Finally, an overview of issues related to safety and monitoring is provided. The CANMAT and ISBD groups hope that these guidelines become a valuable tool for practitioners across the globe
Canadian Network for Mood and Anxiety Treatments (CANMAT) and International Society for Bipolar Disorders (ISBD) 2018 guidelines for the management of patients with bipolar disorder
- Author
- Alda Martin
- Beaulieu Serge
- Berk Michael
- Bond David J
- Calabrese Joseph R
- Frey Benicio N
- Goldstein Benjamin I
- Kanba Shigenobu
- Kapczinski Flavio
- Kennedy Sidney H
- Kozicky Jan
- Lafer Beny
- Lam Raymond W
- MacQueen Glenda
- Malhi Gin
- McIntosh Diane
- McIntyre Roger S
- Milev Roumen V
- OβDonovan Claire
- Parikh Sagar V
- Post Robert M
- Ravindran Arun
- Rej Soham
- Schaffer Ayal
- Sharma Verinder
- Suppes Trisha
- Vazquez Gustavo
- Vieta Eduard
- Yatham Lakshmi N
- Publication venue
- 'Wiley'
- Publication date
- 01/03/2018
- Field of study
Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/142934/1/bdi12609.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/142934/2/bdi12609_am.pd
Single hadron response measurement and calorimeter jet energy scale uncertainty with the ATLAS detector at the LHC
- Author
- A. A. Abdelalim
- A. A. Carter
- A. A. Grillo
- A. A. Komar
- A. A. Minaenko
- A. A. Nepomuceno
- A. A. Snesarev
- A. A. Solodkov
- A. Abdesselam
- A. Ahmad
- A. Akiyama
- A. Aloisio
- A. Alonso
- A. Amorim
- A. Andreazza
- A. Angerami
- A. Anisenkov
- A. Annovi
- A. Antonaki
- A. Antonov
- A. Artamonov
- A. Astbury
- A. Astvatsatourov
- A. B. Fenyuk
- A. B. Lazarev
- A. Bangert
- A. Barashkou
- A. Barbaro Galtieri
- A. Baroncelli
- A. Battaglia
- A. Beddall
- A. Belloni
- A. Bertin
- A. Bingul
- A. Blondel
- A. Bocci
- A. Bogdanchikov
- A. Bogouch
- A. Borisov
- A. Boveia
- A. Braem
- A. Brandt
- A. Bruni
- A. C. KΓΆnig
- A. C. Martyniuk
- A. C. Schaffer
- A. Canepa
- A. Catinaccio
- A. Cattai
- A. Cerri
- A. Chafaq
- A. Cheplakov
- A. Chilingarov
- A. Christov
- A. Ciocio
- A. Clark
- A. Coccaro
- A. Cortes-Gonzalez
- A. D. Doxiadis
- A. D. Hawkins
- A. D. Hershenhorn
- A. D. Pilkington
- A. De Salvo
- A. De Santo
- A. DellβAcqua
- A. Dewhurst
- A. Di Ciaccio
- A. Di Girolamo
- A. Di Mattia
- A. Di Simone
- A. Do Valle Wemans
- A. Doria
- A. Dos Anjos
- A. Dotti
- A. Dudarev
- A. DβOrazio
- A. E. Barton
- A. E. Kiryunin
- A. Engl
- A. Eppig
- A. Ereditato
- A. F. Saavedra
- A. Farbin
- A. Farilla
- A. Favareto
- A. Ferrari
- A. Ferrer
- A. Ferretto Parodi
- A. Filippas
- A. FilipΔiΔ
- A. Firan
- A. Floderus
- A. Formica
- A. Forti
- A. Foussat
- A. G. Buckley
- A. G. Goussiou
- A. G. Kholodenko
- A. G. Myagkov
- A. G. Olchevski
- A. G. Schamov
- A. Gaponenko
- A. Gemmell
- A. Gershon
- A. Gibson
- A. Glazov
- A. Gomes
- A. Gonidec
- A. GoriΕ‘ek
- A. Guida
- A. Gupta
- A. Haas
- A. Hamilton
- A. Harvey
- A. Henrichs
- A. Hoecker
- A. Hoummada
- A. Huettmann
- A. I. Etienvre
- A. I. Kononov
- A. I. Mincer
- A. Irles Quiles
- A. Ishikawa
- A. J. Armbruster
- A. J. Barr
- A. J. Beddall
- A. J. Fowler
- A. J. Lankford
- A. J. Lowe
- A. J. Martin
- A. J. Tanasijczuk
- A. Jantsch
- A. Jeremie
- A. Juste Rozas
- A. K. Ciftci
- A. K. Morley
- A. Kaczmarska
- A. Kapliy
- A. Kasmi
- A. Kastanas
- A. Khanov
- A. Khodinov
- A. Khomich
- A. Khoroshilov
- A. Kiryunin
- A. Klier
- A. Klimentov
- A. Knue
- A. Kootz
- A. Korn
- A. Korol
- A. Kotwal
- A. Koutsman
- A. Krasznahorkay
- A. Kreisel
- A. Kruth
- A. Kugel
- A. Kupco
- A. L. Maslennikov
- A. L. Read
- A. La Rosa
- A. Larner
- A. Leger
- A. Leung Fook Cheong
- A. Lewis
- A. Limosani
- A. Lipniacka
- A. Lister
- A. Lleres
- A. Loginov
- A. Lounis
- A. Lucotte
- A. Ludwig
- A. M. Bach
- A. M. Castaneda Hernandez
- A. M. Cooper-Sarkar
- A. M. Henriques Correia
- A. M. Kiver
- A. M. Leyko
- A. M. Litke
- A. M. Moisseev
- A. M. Nairz
- A. M. Rahimi
- A. M. Zaitsev
- A. Macchiolo
- A. Maio
- A. Manabe
- A. Mann
- A. Manousakis-Katsikakis
- A. Manz
- A. Mapelli
- A. Marin
- A. Marzin
- A. Mastroberardino
- A. Mayne
- A. McCarn
- A. Meade
- A. Mehta
- A. Mengarelli
- A. Messina
- A. Milov
- A. Misiejuk
- A. Moraes
- A. Muir
- A. N. Karyukhin
- A. N. Sisakyan
- A. Nagarkar
- A. Napier
- A. Negri
- A. Nelson
- A. Neusiedl
- A. Nikiforov
- A. Nisati
- A. Ochi
- A. Oh
- A. Olariu
- A. Olszewski
- A. Onofre
- A. Ouraou
- A. Ovcharova
- A. P. Colijn
- A. P. Vorobiev
- A. Pacheco Pages
- A. Palma
- A. Papadelis
- A. Paramonov
- A. Passeri
- A. Penson
- A. Perus
- A. Petridis
- A. Phan
- A. Pinder
- A. Poblaguev
- A. Policicchio
- A. Polini
- A. Poppleton
- A. Pranko
- A. Quadt
- A. R. Davison
- A. R. Gillman
- A. R. Stradling
- A. R. Weidberg
- A. Redelbach
- A. Reichold
- A. Reinsch
- A. Renaud
- A. Richards
- A. Rimoldi
- A. Robichaud-Veronneau
- A. Robson
- A. Roe
- A. Romaniouk
- A. Rose
- A. Rozanov
- A. Ruiz-Martinez
- A. S. Cerqueira
- A. S. Chisholm
- A. S. Kozhin
- A. S. Mete
- A. S. Randle-Conde
- A. S. Thompson
- A. Salamon
- A. Salnikov
- A. Salvucci
- A. Salzburger
- A. Sanchez
- A. Sansoni
- A. Sbrizzi
- A. Schwartzman
- A. SchΓΆning
- A. Seiden
- A. Sfyrla
- A. Shibata
- A. Shmeleva
- A. Sidoti
- A. Sircar
- A. Soffer
- A. Soukharev
- A. Staude
- A. Straessner
- A. Strandlie
- A. Succurro
- A. T. Doyle
- A. T. H. Arce
- A. T. Watson
- A. T. Waugh
- A. Taffard
- A. Talyshev
- A. Tonoyan
- A. Tricoli
- A. Trivedi
- A. Trzupek
- A. Tua
- A. Tudorache
- A. Tykhonov
- A. Undrus
- A. V. Akimov
- A. V. Ivashin
- A. V. Larionov
- A. V. Pleskach
- A. Vaniachine
- A. Vartapetian
- A. Ventura
- A. Vest
- A. Vogel
- A. Warburton
- A. White
- A. Wildauer
- A. Wilson
- A. Yamamoto
- A. Yurkewicz
- A. Zaytsev
- A. Zemla
- A. Zhemchugov
- A. Zoccoli
- A. Zsenei
- A.-E. Nuncio-Quiroz
- ATLAS Collaboration
- ATLAS Collaboration
- ATLAS Collaboration
- ATLAS Collaboration
- ATLAS Collaboration
- ATLAS Collaboration
- ATLAS Collaboration
- ATLAS Collaboration
- B. A. Dolgoshein
- B. A. Petersen
- B. A. Schumm
- B. Abbott
- B. Abi
- B. Alvarez Gonzalez
- B. Aubert
- B. Brau
- B. Brelier
- B. Budick
- B. Butler
- B. C. LeGeyt
- B. C. Smith
- B. Caron
- B. Chapleau
- B. Clement
- B. D. Cooper
- B. De Lotto
- B. Demirkoz
- B. DeWilde
- B. Di Girolamo
- B. Di Micco
- B. Dowler
- B. E. Cox
- B. Epp
- B. Esposito
- B. Fatholahzadeh
- B. G. Pope
- B. Gaur
- B. Giacobbe
- B. Gibbard
- B. Gorini
- B. Gosdzik
- B. Guo
- B. H. Samset
- B. H. Smart
- B. Heinemann
- B. J. Gallop
- B. J. OβBrien
- B. Jackson
- B. K. Gjelsten
- B. K. Wosiek
- B. Kaplan
- B. Laforge
- B. Lemmer
- B. Lenzi
- B. Li
- B. Liberti
- B. Lund-Jensen
- B. Lundberg
- B. M. Barnett
- B. M. Hawes
- B. M. M. Allbrooke
- B. M. Salvachua Ferrando
- B. M. Waugh
- B. M. Wynne
- B. Malaescu
- B. Mansoulie
- B. Martin
- B. Martin
- B. MartinΒ ditΒ Latour
- B. MaΔek
- B. Meirose
- B. Mindur
- B. Nicquevert
- B. Nordkvist
- B. Osculati
- B. P. KerΕ‘evan
- B. Panes
- B. Penning
- B. Pinto
- B. R. Ko
- B. R. Mellado Garcia
- B. Radics
- B. Resende
- B. Ruckert
- B. S. Acharya
- B. Sellden
- B. Simmons
- B. Sopko
- B. Spurlock
- B. Stelzer
- B. Stugu
- B. Szeless
- B. T. King
- B. Toczek
- B. Toggerson
- B. TrocmΓ©
- B. Vachon
- B. Wrona
- B. Yabsley
- B. Zabinski
- B. Zhou
- B. Γ sman
- C. A. Chavez Barajas
- C. A. Edwards
- C. A. Jung
- C. A. Solans
- C. Alexa
- C. Amelung
- C. Anastopoulos
- C. Arnault
- C. Ay
- C. B. Gwilliam
- C. Bacci
- C. Belanger-Champagne
- C. Benchouk
- C. Bernius
- C. Bertella
- C. Bini
- C. Biscarat
- C. Blocker
- C. Bohm
- C. Borer
- C. Bourdarios
- C. Bromberg
- C. C. Ohm
- C. Caramarcu
- C. Caso
- C. Chen
- C. Ciocca
- C. Clement
- C. Cojocaru
- C. Collard
- C. Collins-Tooth
- C. Conta
- C. Cowden
- C. Cuenca Almenar
- C. Cuthbert
- C. D. Burgard
- C. Da Via
- C. Dallapiccola
- C. Debenedetti
- C. Del Papa
- C. Deluca
- C. DeΒ La Taille
- C. Dionisi
- C. Doglioni
- C. Driouichi
- C. Escobar
- C. F. Anders
- C. Fabre
- C. Feng
- C. Ferretti
- C. Fukunaga
- C. G. Lester
- C. G. Zhu
- C. Gabaldon
- C. Galea
- C. GarcΓa
- C. Gatti
- C. Gay
- C. Gemme
- C. Geweniger
- C. Glasman
- C. Goeringer
- C. Goy
- C. Guicheney
- C. Guyot
- C. Gwenlan
- C. GΓΆssling
- C. Haber
- C. Handel
- C. Heller
- C. Helsens
- C. Hensel
- C. Horn
- C. Isaksson
- C. Issever
- C. J. Curtis
- C. J. Kenney
- C. J. Oram
- C. J. Potter
- C. Joram
- C. Kourkoumelis
- C. Kummer
- C. L. Lampen
- C. Lacasta
- C. Lange
- C. Lapoire
- C. Lasseur
- C. Le Maner
- C. Lebel
- C. Leggett
- C. Leroy
- C. Limbach
- C. Liu
- C. Luci
- C. M. Buttar
- C. M. Hawkes
- C. M. Hernandez
- C. Maiani
- C. Maidantchik
- C. Malone
- C. Mattravers
- C. Melachrinos
- C. Menot
- C. Meroni
- C. Meyer
- C. Meyer
- C. Mills
- C. Mora Herrera
- C. N. Booth
- C. N. P. Gee
- C. Omachi
- C. Oropeza Barrera
- C. Osuna
- C. P. Bee
- C. P. Buszello
- C. P. Marino
- C. P. Paleari
- C. P. Ward
- C. Padilla Aranda
- C. Petridou
- C. Pizio
- C. Posch
- C. R. Boddy
- C. R. Royon
- C. Rembser
- C. Roda
- C. Rudolph
- C. Ruwiedel
- C. Sandoval
- C. Santamarina Rios
- C. Santoni
- C. Sbarra
- C. Schiavi
- C. Schmitt
- C. Schroeder
- C. Schwanenberger
- C. Serfon
- C. Stanescu
- C. Suhr
- C. T. Potter
- C. Taylor
- C. Topfel
- C. Troncon
- C. Tsarouchas
- C. Vellidis
- C. W. Loh
- C. Wang
- C. Weiser
- C. Weydert
- C. Wiglesworth
- C. Wright
- C. Xu
- C. Young
- C. Zeitnitz
- C. Zendler
- C.-M. Cuciuc
- Ch. Geich-Gimbel
- CMS Collaboration
- D. A. A. Geerts
- D. A. Forbush
- D. A. Maximov
- D. A. Milstead
- D. A. Scannicchio
- D. A. Soh
- D. Arutinov
- D. Axen
- D. Banfi
- D. Barberis
- D. Benchekroun
- D. Berge
- D. Boscherini
- D. Botterill
- D. Boumediene
- D. Britton
- D. Bruncko
- D. C. Bailey
- D. C. OβNeil
- D. Caforio
- D. Calvet
- D. Cameron
- D. Capriotti
- D. Casadei
- D. Cauz
- D. Cavalli
- D. Chakraborty
- D. Chromek-Burckhart
- D. Cinca
- D. Costanzo
- D. CΓ΄tΓ©
- D. Dannheim
- D. De Pedis
- D. della Volpe
- D. Derendarz
- D. Dobos
- D. E. FerreiraΒ deΒ Lima
- D. Emeliyanov
- D. Eriksson
- D. Errede
- D. Evangelakou
- D. F. Howell
- D. Fassouliotis
- D. Fellmann
- D. Ferrere
- D. Fortin
- D. Fournier
- D. Francis
- D. Froidevaux
- D. G. Charlton
- D. G. Underwood
- D. Gillberg
- D. Giugni
- D. Goujdami
- D. Guest
- D. H. Saxon
- D. Hall
- D. Harper
- D. Hauff
- D. Hawkins
- D. Hayden
- D. Hellmich
- D. Hill
- D. Hirschbuehl
- D. Hoffmann
- D. Iliadis
- D. Joffe
- D. K. Jana
- D. Kar
- D. Kharchenko
- D. Kisielewska
- D. Kuhn
- D. L. Adams
- D. Lacour
- D. Lellouch
- D. Levin
- D. Lissauer
- D. Liu
- D. Lopez Mateos
- D. Ludwig
- D. Lumb
- D. Lynn
- D. M. Gingrich
- D. M. Pomarede
- D. M. Rebuzzi
- D. M. Seliverstov
- D. M. Strom
- D. Malon
- D. Milstein
- D. Moreno
- D. Muenstermann
- D. O. Savu
- D. Oliveira Damazio
- D. Olivito
- D. Orestano
- D. P. Benjamin
- D. P. C. Sankey
- D. Pallin
- D. Pantea
- D. Paredes Hernandez
- D. Petschull
- D. Pomeroy
- D. Price
- D. Prieur
- D. R. Hadley
- D. R. Quarrie
- D. R. Rust
- D. R. Tovey
- D. Rahm
- D. Robinson
- D. RodaΒ DosΒ Santos
- D. Rodriguez
- D. Rousseau
- D. S. Damiani
- D. S. Popovic
- D. Salihagic
- D. Salvatore
- D. Sampsonidis
- D. Schaile
- D. Scheirich
- D. Schouten
- D. Sherman
- D. Short
- D. Silverstein
- D. Smith
- D. Su
- D. T. Pignotti
- D. Ta
- D. Tardif
- D. Tsionou
- D. Tsybychev
- D. Turecek
- D. Urbaniec
- D. V. Dedovich
- D. vanΒ der Ster
- D. Varouchas
- D. Ventura
- D. Vladoiu
- D. W. Miller
- D. Wendland
- D. Whiteson
- D. Whittington
- D. Wicke
- D. Xu
- D. Y. Bardin
- D. Yu
- D. Zerwas
- D. Zhang
- D. Zieminska
- Dj. Sijacki
- E. A. Ouellette
- E. A. Starchenko
- E. Abat
- E. Acerbi
- E. Arik
- E. Auge
- E. B. Diehl
- E. B. F. G. Knoops
- E. B. Klinkby
- E. Badescu
- E. Banas
- E. Benhar Noccioli
- E. Bergeaas Kuutmann
- E. Berglund
- E. Brodet
- E. Busato
- E. Castaneda-Miranda
- E. Chareyre
- E. Cheu
- E. Cogneras
- E. Coniavitis
- E. Davies
- E. Dawe
- E. Devetak
- E. Dobson
- E. Duchovni
- E. Eisenhandler
- E. Ertel
- E. Etzion
- E. Fullana Torregrosa
- E. G. Tskhadadze
- E. Gorini
- E. Gornicki
- E. Graziani
- E. Gross
- E. Hazen
- E. HigΓ³n-Rodriguez
- E. Hines
- E. I. Rosenberg
- E. J. Feng
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- E. L. Barberio
- E. Ladygin
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- E. Solfaroli Camillocci
- E. Stanecka
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- E. Turlay
- E. V. Bouhova-Thacker
- E. V. Korolkova
- E. Valladolid Gallego
- E. vanΒ der Kraaij
- E. vanΒ der Poel
- E. Vilucchi
- E. Vinek
- E. von Toerne
- E. W. Hughes
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- E. Williams
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- E.-E. Kluge
- F. Ahles
- F. Alessandria
- F. Anghinolfi
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- F. Bertinelli
- F. Bertolucci
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- F. Canelli
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- F. Conventi
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- F. E. Taylor
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- F. Etienne
- F. F. Martin
- F. Fiedler
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- F. Garberson
- F. Gianotti
- F. Grancagnolo
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- F. Hirsch
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- F. J. Tique Aires Viegas
- F. J. Wickens
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- F. Legger
- F. Linde
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- F. M. Giorgi
- F. Malek
- F. Marchese
- F. Marroquim
- F. Marzano
- F. Monticelli
- F. Mueller
- F. Niedercorn
- F. Ould-Saada
- F. Paige
- F. Parodi
- F. Pastore
- F. Petrucci
- F. Podlyski
- F. Polci
- F. Prokoshin
- F. Quinonez
- F. Ragusa
- F. Rauscher
- F. Rizatdinova
- F. Ruggieri
- F. RΓΌhr
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- F. Safai Tehrani
- F. Salvatore
- F. Sarri
- F. Seifert
- F. Siegert
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- F. Spila
- F. Tarrade
- F. Tian
- F. Touchard
- F. Ukegawa
- F. Vannucci
- F. Varela Rodriguez
- F. Vazeille
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- Fr. Pastore
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- G. A. Stewart
- G. Aad
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- G. Alexander
- G. Alexandre
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- G. AmorΓ³s
- G. Anders
- G. Arabidze
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- G. Azuelos
- G. Baccaglioni
- G. Barone
- G. Bella
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- G. OteroΒ yΒ Garzon
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- G. Piacquadio
- G. Polesello
- G. Poulard
- G. PΓ‘sztor
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- G. Zobernig
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- I. MandiΔ
- I. Massa
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- I. Nikolic-Audit
- I. Nomidis
- I. Orlov
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- I. R. Boyko
- I. Reisinger
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- I. Rubinskiy
- I. Sadeh
- I. Satsounkevitch
- I. Stekl
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- I. Turk Cakir
- I. Ueda
- I. van Vulpen
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- L. J. Levinson
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- L. Magnoni
- L. Mandelli
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- L. Mapelli
- L. March
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- L. Merola
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- L. MijoviΔ
- L. Miralles Verge
- L. Morvaj
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- M. Begel
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- M. DβOnofrio
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- M. El Kacimi
- M. Ellert
- M. Elsing
- M. Ernst
- M. Escalier
- M. F. Tripiana
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- M. George
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- M. H. Genest
- M. Hamer
- M. Hance
- M. Hatch
- M. Hauschild
- M. Havranek
- M. He
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- M. Henke
- M. Hirose
- M. Hohlfeld
- M. Holder
- M. Huhtinen
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- M. I. Besana
- M. I. Gostkin
- M. I. Pedraza Morales
- M. I. Scherzer
- M. Ibbotson
- M. Ikeno
- M. Imori
- M. Iodice
- M. Ishino
- M. J. Costa
- M. J. Fisher
- M. J. Flowerdew
- M. J. KotamΓ€ki
- M. J. Losty
- M. J. Oreglia
- M. J. Price
- M. J. Schultens
- M. J. Shochet
- M. J. Tibbetts
- M. J. White
- M. J. Woudstra
- M. Janus
- M. Jimenez Belenguer
- M. Johansen
- M. K. Jha
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- M. Kaneda
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- M. Karagoz
- M. Karnevskiy
- M. Kataoka
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- M. Khakzad
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- M. Kollefrath
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- M. Lassnig
- M. Lefebvre
- M. Legendre
- M. Lehmacher
- M. Leltchouk
- M. Leyton
- M. Lichtnecker
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- M. Livan
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- M. Marcisovsky
- M. Martinez
- M. Marx
- M. Mathes
- M. Mazur
- M. Mazzanti
- M. Mechtel
- M. Medinnis
- M. Mikestikova
- M. MikuΕΎ
- M. Mineev
- M. MiΓ±ano Moya
- M. Moreno LlΓ‘cer
- M. Morgenstern
- M. Morii
- M. Mosidze
- M. Mudrinic
- M. Myska
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- M. Nessi
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- M. Nozaki
- M. Olcese
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- M. Pinamonti
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- M. Purohit
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- M. R. Jaekel
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- M. Raas
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- M. Rescigno
- M. Ridel
- M. Rijpstra
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- M. Robinson
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- M. S. Neubauer
- M. S. Weber
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- M. Sandhoff
- M. Scarcella
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- M. Schwoerer
- M. Seman
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- M. Shimojima
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- M. Simonyan
- M. Slater
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- M. Solar
- M. Sosebee
- M. Spousta
- M. Strang
- M. Strauss
- M. Suk
- M. Svatos
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- M. T. PΓ©rez GarcΓa-EstaΓ±
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- M. Tasevsky
- M. Tatarkhanov
- M. Teinturier
- M. Teixeira Dias Castanheira
- M. Testa
- M. Thioye
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- M. Tomoto
- M. Trottier-McDonald
- M. Trzebinski
- M. Tsiakiris
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- M. Tylmad
- M. Tyndel
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- M. Uslenghi
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- M. Vanadia
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- M. Villaplana Perez
- M. Virchaux
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- M. Vlasak
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- M. Vos
- M. Vranjes Milosavljevic
- M. Vreeswijk
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- M. W. Wolter
- M. Warsinsky
- M. Weber
- M. Wen
- M. Werner
- M. Werth
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- M. Wielers
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- S. H. Kim
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- S. H. Robertson
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- S. Kalinin
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- S. Kluth
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- S. L. Cheung
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- S. Leontsinis
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- S. Mehlhase
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- S. MΓ€ttig
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- S. Nelson
- S. Nemecek
- S. O. Holmgren
- S. Oda
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- S. P. Ahlen
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- S. P. Bieniek
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- S. Shimizu
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- S. Snyder
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- S. Tanaka
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- S. V. Chekulaev
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- S. V. Mouraviev
- S. V. Peleganchuk
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- S. Xella
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- S. Ye
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- S. Yu. Sivoklokov
- S. Yu. Smirnov
- S. Zenz
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- S. Zimmermann
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- S.-C. Hsu
- Sw. Banerjee
- T. A. Dietzsch
- T. A. Martin
- T. A. MΓΌller
- T. Adye
- T. Akdogan
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- T. Andeen
- T. B. Huffman
- T. B. Sjursen
- T. Bain
- T. Barber
- T. Barillari
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- T. Buanes
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- T. Burgess
- T. C. Meyer
- T. C. Petersen
- T. C. Rave
- T. Carli
- T. Chen
- T. Cornelissen
- T. Costin
- T. Cuhadar Donszelmann
- T. Dai
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- T. Del Prete
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- T. Doherty
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- T. Ehrich
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- T. Fonseca Martin
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- T. G. McCarthy
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- T. Greenshaw
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- T. Hayakawa
- T. Hayashi
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- T. Ince
- T. J. Brodbeck
- T. J. Jones
- T. J. Khoo
- T. J. Neep
- T. Jovin
- T. K. Nelson
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- T. Kanno
- T. Kawamoto
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- T. Kittelmann
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- T. Kluge
- T. Kobayashi
- T. Koffas
- T. Kohriki
- T. Koi
- T. Kokott
- T. Kondo
- T. Kono
- T. Kruker
- T. Kubota
- T. Kuhl
- T. Lagouri
- T. Lari
- T. LeCompte
- T. Lenz
- T. Loddenkoetter
- T. Lohse
- T. M. Hong
- T. M. Liss
- T. Maeno
- T. Mashimo
- T. Masubuchi
- T. Matsushita
- T. Mclaughlan
- T. Meguro
- T. Moa
- T. Mueller
- T. N. Addy
- T. N. Trinh
- T. Nakamura
- T. Nattermann
- T. Naumann
- T. Niinikoski
- T. Nishiyama
- T. Nunnemann
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- T. Perez Cavalcanti
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- T. Shin
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- T. Spreitzer
- T. Sugimoto
- T. Sumida
- T. Sykora
- T. T. Voss
- T. Takeshita
- T. Theveneaux-Pelzer
- T. Tic
- T. Todorov
- T. Trefzger
- T. Vickey
- T. Vu Anh
- T. W. Jones
- T. Wenaus
- T. Wengler
- T. Yamamura
- T. Yamanaka
- T. Yamazaki
- T. Z. Kowalski
- T. Zhao
- T. Ε½eniΕ‘
- Th. D. Papadopoulou
- U. Bitenc
- U. Blumenschein
- U. Bratzler
- U. De Sanctis
- U. Husemann
- U. K. Yang
- U. Klein
- U. Kruchonak
- U. Landgraf
- U. Mallik
- U. Parzefall
- U. SchΓ€fer
- U. Soldevila
- V. A. Bednyakov
- V. A. Gapienko
- V. A. Kantserov
- V. A. Kazanin
- V. A. Korotkov
- V. A. Kramarenko
- V. A. Mitsou
- V. A. Schegelsky
- V. Andrei
- V. B. Bobrovnikov
- V. B. Vinogradov
- V. Bansal
- V. Bartsch
- V. Boisvert
- V. Boldea
- V. Bortolotto
- V. BΓΌscher
- V. Canale
- V. Castillo Gimenez
- V. Cavasinni
- V. Chavda
- V. Chernyatin
- V. Cindro
- V. Consorti
- V. D. Peshekhonov
- V. Dao
- V. E. Ozcan
- V. F. Chepurnov
- V. Ferrara
- V. G. Bondarenko
- V. G. Zaets
- V. Gallo
- V. Garonne
- V. Giakoumopoulou
- V. Giangiobbe
- V. Gilewsky
- V. Grassi
- V. Gratchev
- V. Hedberg
- V. I. Rud
- V. I. Vassilakopoulos
- V. Ippolito
- V. Izzo
- V. J. Guarino
- V. J. Martin
- V. Jain
- V. Juranek
- V. Kartvelishvili
- V. Kaushik
- V. Khovanskiy
- V. Kolesnikov
- V. Koreshev
- V. Kouskoura
- V. Kral
- V. Kukhtin
- V. Kus
- V. Lavorini
- V. Lendermann
- V. M. Kotov
- V. M. Romanov
- V. Malyshev
- V. Martinez Outschoorn
- V. Moeller
- V. N. Goryachev
- V. N. Gushchin
- V. Nguyen Thi Hong
- V. Nikolaenko
- V. O. Tikhomirov
- V. OβShea
- V. P. Lombardo
- V. P. Maleev
- V. Paolone
- V. Perez Reale
- V. Polychronakos
- V. Pozdnyakov
- V. R. Lacuesta
- V. Radescu
- V. Rojo
- V. Rossetti
- V. Rumiantsev
- V. Ryadovikov
- V. Sanchez Martinez
- V. Savinov
- V. Scharf
- V. Simak
- V. Sipica
- V. Smakhtin
- V. Sopko
- V. Tsiskaridze
- V. Tsulaia
- V. Tudorache
- V. V. Ammosov
- V. V. Kabachenko
- V. V. Kostyukhin
- V. V. Sulin
- V. V. Zmouchko
- V. Vacek
- V. Vercesi
- V. Vorobel
- V. Vorwerk
- V. Vrba
- V. Zhuravlov
- V. Zutshi
- W. B. Quayle
- W. Bhimji
- W. Blum
- W. Buttinger
- W. C. Wong
- W. Cleland
- W. Dabrowski
- W. Davey
- W. Ehrenfeld
- W. F. Mader
- W. Fedorko
- W. Fernando
- W. G. Scott
- W. H. Bell
- W. Iwanski
- W. J. Dearnaley
- W. J. Mills
- W. J. Murray
- W. Ji
- W. K. Brooks
- W. Kozanecki
- W. L. Ebenstein
- W. Lampl
- W. Lavrijsen
- W. Liebig
- W. Mohr
- W. Park
- W. S. Lockman
- W. T. Meyer
- W. Taylor
- W. Trischuk
- W. Vandelli
- W. Verkerke
- W. Wagner
- W. Walkowiak
- W. Wiedenmann
- W. Willis
- X. Chen
- X. Espinal Curull
- X. Ju
- X. Lei
- X. Li
- X. Lou
- X. Portell Bueso
- X. Prudent
- X. Ruan
- X. S. Anduaga
- X. Sun
- X. Wu
- X. Zhang
- X. Zhuang
- Y. A. Kurochkin
- Y. A. Tikhonov
- Y. Arai
- Y. Azuma
- Y. B. Pan
- Y. Bai
- Y. Benhammou
- Y. Coadou
- Y. Davygora
- Y. Doi
- Y. F. Ryabov
- Y. Fang
- Y. Gusakov
- Y. Hasegawa
- Y. HernΓ‘ndez JimΓ©nez
- Y. Homma
- Y. Ikegami
- Y. Ilchenko
- Y. Jiang
- Y. Kataoka
- Y. Komori
- Y. Kulchitsky
- Y. Liu
- Y. Mahalalel
- Y. Makida
- Y. Ming
- Y. Munwes
- Y. Nagasaka
- Y. Nakahama
- Y. Ninomiya
- Y. Okumura
- Y. Oren
- Y. Pylypchenko
- Y. Rozen
- Y. S. Gao
- Y. Silver
- Y. Smirnov
- Y. Sugaya
- Y. Suzuki
- Y. Suzuki
- Y. Takahashi
- Y. Takubo
- Y. Tanaka
- Y. Tayalati
- Y. Unno
- Y. V. Grishkevich
- Y. Wu
- Y. Xie
- Y. Yamazaki
- Y. Yang
- Y. Yang
- Y. Yao
- Y. Yasu
- Y. Zhou
- Y. Zhu
- Y. Zolnierowski
- Yu. M. Sviridov
- Z. Czyczula
- Z. D. Greenwood
- Z. Dolezal
- Z. Drasal
- Z. Hajduk
- Z. Hubacek
- Z. Kohout
- Z. L. Ren
- Z. Liang
- Z. Marshall
- Z. Meng
- Z. Qian
- Z. Qin
- Z. Rurikova
- Z. V. Krumshteyn
- Z. van Kesteren
- Z. Weng
- Z. Yan
- Z. Yang
- Z. Zajacova
- Z. Zenonos
- Z. Zhan
- Z. Zhang
- Z. Zhao
- Z. Zinonos
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 06/03/2012
- Field of study
The uncertainty on the calorimeter energy response to jets of particles is
derived for the ATLAS experiment at the Large Hadron Collider (LHC). First, the
calorimeter response to single isolated charged hadrons is measured and
compared to the Monte Carlo simulation using proton-proton collisions at
centre-of-mass energies of sqrt(s) = 900 GeV and 7 TeV collected during 2009
and 2010. Then, using the decay of K_s and Lambda particles, the calorimeter
response to specific types of particles (positively and negatively charged
pions, protons, and anti-protons) is measured and compared to the Monte Carlo
predictions. Finally, the jet energy scale uncertainty is determined by
propagating the response uncertainty for single charged and neutral particles
to jets. The response uncertainty is 2-5% for central isolated hadrons and 1-3%
for the final calorimeter jet energy scale.Comment: 24 pages plus author list (36 pages total), 23 figures, 1 table,
submitted to European Physical Journal
Measurement of the production cross section for W-bosons in association with jets in pp collisions at s=7 TeV with the ATLAS detector
- Author
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- Albrand S
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- Zaidan R
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- Zalite Y
- Zanello L
- Zarzhitsky P
- Zaytsev A
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- Zeitnitz C
- Zeller M
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- Zemla A
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- Zenin A
- Zenin O
- Zenonos Z
- Zenz S
- Zerwas D
- Zevi della Porta G
- Zhan Z
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- Zhang H
- Zhang J
- Zhang X
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- Zhao T
- Zhao Z
- Zhemchugov A
- Zheng S
- Zhong J
- Zhou B
- Zhou N
- Zhou Y
- Zhu C
- Zhu H
- Zhu Y
- Zhuang X
- Zhuravlov V
- Zieminska D
- Zilka B
- Zimmermann R
- Zimmermann S
- Ziolkowski M
- Zitoun R
- Zivkovic L
- Zmouchko V
- Zobernig G
- Zoccoli A
- Zolnierowski Y
- Zsenei A
- zur Nedden M
- Zutshi V
- Zwalinski L
- ΒΏeniΒΏ T
- Γ sman B
- Γye O
- Publication venue
- Publication date
- 01/01/2011
- Field of study
Measurement of the inclusive and dijet cross-sections of b-jets in pp collisions at sqrt(s) = 7 TeV with the ATLAS detector
- Author
- Aad G
- Abbott B
- Abdallah J
- Abdelalim AA
- Abdesselam A
- Abdinov O
- Abi B
- Abolins M
- Abramowicz H
- Abreu H
- Acerbi E
- Acharya BS
- Ackers M
- Adams DL
- Addy TN
- Adelman J
- Aderholz M
- Adomeit S
- Adragna P
- Adye T
- Aefsky S
- Aguilar-Saavedra JA
- Aharrouche M
- Ahlen SP
- Ahles F
- Ahmad A
- Ahsan M
- Aielli G
- Akdogan T
- Akesson TPA
- Akimoto G
- Akimov AV
- Alam MA
- Alam MS
- Albrand S
- Aleksa M
- Aleksandrov IN
- Aleppo M
- Alessandria F
- Alexa C
- Alexander G
- Alexandre G
- Alexopoulos T
- Alhroob M
- Aliev M
- Alimonti G
- Alison J
- Aliyev M
- Allport PP
- Allwood-Spiers SE
- Almenar CC
- Almond J
- Aloisio A
- Alon R
- Alonso A
- Alonso J
- Alviggi MG
- Amako K
- Amaral P
- Amelung C
- Ammosov VV
- Amorim A
- Amoros G
- Amram N
- Anastopoulos C
- Andari N
- Andeen T
- Anders CF
- Anderson KJ
- Andreazza A
- Andrei V
- Andrieux M-L
- Anduaga XS
- Angerami A
- Anghinolfi F
- Anh TV
- Anjos N
- Annovi A
- Antonaki A
- Antonelli M
- Antonelli S
- Antos J
- Anulli F
- Aoun S
- Apolle R
- Arabidze G
- Aracena I
- Arai Y
- Arce ATH
- Archambault JP
- Arfaoui S
- Arguin J-F
- Arik E
- Arik M
- Armbruster AJ
- Arms KE
- Armstrong SR
- Arnaez O
- Arnault C
- Artamonov A
- Artoni G
- Arutinov D
- Asai S
- Asfandiyarov R
- Ask S
- Asman B
- Asquith L
- Assamagan K
- Astbury A
- Astvatsatourov A
- Atoian G
- Aubert B
- Auerbach B
- Auge E
- Augsten K
- Aurousseau M
- Austin N
- Avramidou R
- Axen D
- Ay C
- Azuelos G
- Azuma Y
- Baak MA
- Baccaglioni G
- Bacci C
- Bach AM
- Bachacou H
- Bachas K
- Bachy G
- Backes M
- Badescu E
- Bagnaia P
- Bahinipati S
- Bai Y
- Bailey DC
- Bain T
- Baines JT
- Baker OK
- Baker S
- Banas E
- Banerjee P
- Banerjee S
- Banfi D
- Bangert A
- Bansal V
- Bansil HS
- Barak L
- Baranov SP
- Barashkou A
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- Barberio EL
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- Barbero M
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- Barillari T
- Barisonzi M
- Barklow T
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- Barnett BM
- Barnett RM
- Baroncelli A
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- Barreiro F
- Barrera CO
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- Bartoldus R
- Barton AE
- Bartsch D
- Bates RL
- Batkova L
- Batley JR
- Battaglia A
- Battistin M
- Battistoni G
- Bauer F
- Bawa HS
- Beare B
- Beau T
- Beauchemin PH
- Beccherle R
- Bechtle P
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- Beckingham M
- Becks KH
- Beddall A
- Beddall AJ
- Bednyakov VA
- Bee C
- Begel M
- Behera PK
- Beimforde M
- Belanger-Champagne C
- Belenguer MJ
- Belhorma B
- Bell PJ
- Bell WH
- Bella G
- Bella LA
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- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 31/12/2010
- Field of study
The inclusive and dijet production cross-sections have been measured for jets
containing b-hadrons (b-jets) in proton-proton collisions at a centre-of-mass
energy of sqrt(s) = 7 TeV, using the ATLAS detector at the LHC. The
measurements use data corresponding to an integrated luminosity of 34 pb^-1.
The b-jets are identified using either a lifetime-based method, where secondary
decay vertices of b-hadrons in jets are reconstructed using information from
the tracking detectors, or a muon-based method where the presence of a muon is
used to identify semileptonic decays of b-hadrons inside jets. The inclusive
b-jet cross-section is measured as a function of transverse momentum in the
range 20 < pT < 400 GeV and rapidity in the range |y| < 2.1. The bbbar-dijet
cross-section is measured as a function of the dijet invariant mass in the
range 110 < m_jj < 760 GeV, the azimuthal angle difference between the two jets
and the angular variable chi in two dijet mass regions. The results are
compared with next-to-leading-order QCD predictions. Good agreement is observed
between the measured cross-sections and the predictions obtained using POWHEG +
Pythia. MC@NLO + Herwig shows good agreement with the measured bbbar-dijet
cross-section. However, it does not reproduce the measured inclusive
cross-section well, particularly for central b-jets with large transverse
momenta.Comment: 10 pages plus author list (21 pages total), 8 figures, 1 table, final
version published in European Physical Journal
Jet energy measurement with the ATLAS detector in proton-proton collisions at root s=7 TeV
- Author
- Aad G
- Abbott B
- Abdallah J
- Abdelalim AA
- Abdesselam A
- Abdinov O
- Abi B
- Abolins M
- Abramowicz H
- Abreu H
- Acerbi E
- Acharya BS
- Adams DL
- Addy TN
- Adelman J
- Aderholz M
- Adomeit S
- Adragna P
- Adye T
- Aefsky S
- Aguilar-Saavedra JA
- Aharrouche M
- Ahlen SP
- Ahles F
- Ahmad A
- Ahsan M
- Aielli G
- Akdogana T
- Akesson TPA
- Akimoto G
- Akimov AV
- Akiyama A
- Aktas A
- Alam MA
- Alam MS
- Albert J
- Albrand S
- Aleksa M
- Aleksandrov IN
- Alessandria F
- Alexa C
- Alexander G
- Alexandre G
- Alexopoulos T
- Alhroob M
- Aliev M
- Alimonti G
- Alison J
- Aliyev M
- Allport PP
- Allwood-Spiers SE
- Almenar CC
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- Zhemchugov A
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- Zwalinski L
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/03/2013
- Field of study
The jet energy scale and its systematic uncertainty are determined for jets measured with the ATLAS detector at the LHC in proton-proton collision data at a centre-of-mass energy of βs = 7TeV corresponding to an integrated luminosity of 38 pb-1. Jets are reconstructed with the anti-kt algorithm with distance parameters R=0. 4 or R=0. 6. Jet energy and angle corrections are determined from Monte Carlo simulations to calibrate jets with transverse momenta pTβ₯20 GeV and pseudorapidities {pipe}Ξ·{pipe}<4. 5. The jet energy systematic uncertainty is estimated using the single isolated hadron response measured in situ and in test-beams, exploiting the transverse momentum balance between central and forward jets in events with dijet topologies and studying systematic variations in Monte Carlo simulations. The jet energy uncertainty is less than 2. 5 % in the central calorimeter region ({pipe}Ξ·{pipe}<0. 8) for jets with 60β€pT<800 GeV, and is maximally 14 % for pT<30 GeV in the most forward region 3. 2β€{pipe}Ξ·{pipe}<4. 5. The jet energy is validated for jet transverse momenta up to 1 TeV to the level of a few percent using several in situ techniques by comparing a well-known reference such as the recoiling photon pT, the sum of the transverse momenta of tracks associated to the jet, or a system of low-pT jets recoiling against a high-pT jet. More sophisticated jet calibration schemes are presented based on calorimeter cell energy density weighting or hadronic properties of jets, aiming for an improved jet energy resolution and a reduced flavour dependence of the jet response. The systematic uncertainty of the jet energy determined from a combination of in situ techniques is consistent with the one derived from single hadron response measurements over a wide kinematic range. The nominal corrections and uncertainties are derived for isolated jets in an inclusive sample of high-pT jets. Special cases such as event topologies with close-by jets, or selections of samples with an enhanced content of jets originating from light quarks, heavy quarks or gluons are also discussed and the corresponding uncertainties are determined. Β© 2013 CERN for the benefit of the ATLAS collaboration
Sequence Similarity Network Reveals Common Ancestry of Multidomain Proteins
- Author
- A Bairoch
- A Bjorklund
- A Enright
- A Hirsh
- A McLysaght
- A Murzin
- A Rzhetsky
- A Schaffer
- B Rost
- B Westover
- C Jones
- C Ouzounis
- C Wu
- Christine Vogel
- D Brown
- D Durand
- D Hillis
- D Kaiser
- D Medini
- D Robinson
- D Sayah
- Dannie Durand
- E Marcotte
- E Marcotte
- ED Scheeff
- F Pearl
- G Blanc
- G Blin
- G Karev
- G Karev
- G Rubin
- George B. Davis
- H Tordai
- I Ben-Shlomo
- I Fumasoni
- J Fong
- J Liu
- J Nadeau
- J Weiner
- J Wootton
- Jacob M. Joseph
- K Lin
- L Geer
- L Patthy
- M Ashburner
- M Gribskov
- M Huynen
- M Long
- M Pellegrini
- M Price
- M Remm
- N Mulder
- N Song
- N Song
- N Vinckenbosch
- Nan Song
- O Redfern
- P Dehal
- R Overbeek
- R Tatusov
- RD Finn
- S Altschul
- S Altschul
- S Altschul
- S Cheek
- S Hanks
- S Kummerfeld
- S O'Brien
- S Wuchty
- T Dandekar
- T Dickmeis
- T Miyata
- T Przytycka
- T Przytycka
- W Fitch
- W Fitch
- W Gilbert
- W Li
- X Chen
- X Chen
- Y Van de Peer
- Y Wolf
- Z Fu
- Publication venue
- Public Library of Science
- Publication date
- 01/05/2008
- Field of study
We address the problem of homology identification in complex multidomain families with varied domain architectures. The challenge is to distinguish sequence pairs that share common ancestry from pairs that share an inserted domain but are otherwise unrelated. This distinction is essential for accuracy in gene annotation, function prediction, and comparative genomics. There are two major obstacles to multidomain homology identification: lack of a formal definition and lack of curated benchmarks for evaluating the performance of new methods. We offer preliminary solutions to both problems: 1) an extension of the traditional model of homology to include domain insertions; and 2) a manually curated benchmark of well-studied families in mouse and human. We further present Neighborhood Correlation, a novel method that exploits the local structure of the sequence similarity network to identify homologs with great accuracy based on the observation that gene duplication and domain shuffling leave distinct patterns in the sequence similarity network. In a rigorous, empirical comparison using our curated data, Neighborhood Correlation outperforms sequence similarity, alignment length, and domain architecture comparison. Neighborhood Correlation is well suited for automated, genome-scale analyses. It is easy to compute, does not require explicit knowledge of domain architecture, and classifies both single and multidomain homologs with high accuracy. Homolog predictions obtained with our method, as well as our manually curated benchmark and a web-based visualization tool for exploratory analysis of the network neighborhood structure, are available at http://www.neighborhoodcorrelation.org. Our work represents a departure from the prevailing view that the concept of homology cannot be applied to genes that have undergone domain shuffling. In contrast to current approaches that either focus on the homology of individual domains or consider only families with identical domain architectures, we show that homology can be rationally defined for multidomain families with diverse architectures by considering the genomic context of the genes that encode them. Our study demonstrates the utility of mining network structure for evolutionary information, suggesting this is a fertile approach for investigating evolutionary processes in the post-genomic era
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