Chapter 11: Vulnerability of benthic invertebrates of the Great Barrier Reef to climate change

This chapter deals with benthic invertebrates inhabiting the extensive inter-reef soft bottom habitats and those occurring on the reef, excluding corals. For the remainder of the chapter, the term ‘benthic invertebrate’ refers to all invertebrates excluding corals. An assessment of the impacts of climate change on non-coral benthic invertebrates poses particular challenges: i) benthic invertebrates include an extraordinary diversity of marine organisms, including many microscopic, infaunal, boring or ephemeral species that can be difficult to sample and are poorly known taxonomically; ii) benthic invertebrates employ a diversity of reproductive strategies, broadly including planktotrophy (development through feeding larvae), lecithotrophy (development through non-feeding larvae) and direct development (release of post-metamorphic juveniles), as well as asexual reproduction, making broad generalisations of dispersal capabilities difficult; iii) factors determining species distributions are poorly known for most species; iv) benthic invertebrates exhibit a tremendous variety of lifestyles and forms, including colonial, sedentary and errant species; v) many species include either a pelagic larval or adult stage, so effects of climate change may vary during their lives (see McKinnon et al. chapter 6 for comments on planktonic forms); and, vi) research on the biogeography of benthic invertebrates on the Great Barrier Reef (GBR) is strongly biased towards commercial or destructive species.This is Chapter 11 of Climate change and the Great Barrier Reef: a vulnerability assessment. The entire book can be found at http://hdl.handle.net/11017/13

Catalogue of squat lobsters of the world (Crustacea: Decapoda: Anomura-families Chirostylidae, Galatheidae and Kiwaidae)

220 páginas, 5 figuras, 1 tabla.[EN] This adaptation text reproduces Anexo I of the dissertation “Results”: Sistemática e historia evolutiva de la Familia Galatheidae (Crustacea: Anomura) en el Pacífico Sur, of Patricia Cabezas (2010) http://hdl.handle.net/10261/134771[ES] Este artículo es una adaptación del Anexo I de la tesis doctoral: Sistemática e historia evolutiva de la Familia Galatheidae (Crustacea: Anomura) en el Pacífico Sur, of Patricia Cabezas (2010) http://hdl.handle.net/10261/134771Taxonomic and ecological interest in squat lobsters has grown considerably over the last two decades. A checklist of the 870 current valid species of squat lobsters of the world (families Chirostylidae, Galatheidae and Kiwaidae) is presented. The compilation includes the complete taxonomic synonymy and geographical distribution of each species plus type information (type locality, repository and registration number). The numbers of described species in the world’s major ocean basins are summarised.Peer reviewe

Climate Change and invasibility of the Antarctic benthos

Benthic communities living in shallow-shelf habitats in Antarctica (<100-m depth) are archaic in their structure and function. Modern predators, including fast-moving, durophagous (skeleton-crushing) bony fish, sharks, and crabs, are rare or absent; slow-moving invertebrates are the top predators; and epifaunal suspension feeders dominate many soft substratum communities. Cooling temperatures beginning in the late Eocene excluded durophagous predators, ultimately resulting in the endemic living fauna and its unique food-web structure. Although the Southern Ocean is oceanographically isolated, the barriers to biological invasion are primarily physiological rather than geographic. Cold temperatures impose limits to performance that exclude modern predators. Global warming is now removing those physiological barriers, and crabs are reinvading Antarctica. As sea temperatures continue to rise, the invasion of durophagous predators will modernize the shelf benthos and erode the indigenous character of marine life in Antarctica

Global cooling as a driver of diversification in a major marine clade

Climate is a strong driver of global diversity and will become increasingly important as human influences drive temperature changes at unprecedented rates. Here we investigate diversification and speciation trends within a diverse group of aquatic crustaceans, the Anomura. We use a phylogenetic framework to demonstrate that speciation rate is correlated with global cooling across the entire tree, in contrast to previous studies. Additionally, we find that marine clades continue to show evidence of increased speciation rates with cooler global temperatures, while the single freshwater clade shows the opposite trend with speciation rates positively correlated to global warming. Our findings suggest that both global cooling and warming lead to diversification and that habitat plays a role in the responses of species to climate change. These results have important implications for our understanding of how extant biota respond to ongoing climate change and are of particular importance for conservation planning of marine ecosystems

The Application of DNA Barcodes for the Identification of Marine Crustaceans from the North Sea and Adjacent Regions

During the last years DNA barcoding has become a popular method of choice for molecular specimen identification. Here we present a comprehensive DNA barcode library of various crustacean taxa found in the North Sea, one of the most extensively studied marine regions of the world. Our data set includes 1,332 barcodes covering 205 species, including taxa of the Amphipoda, Copepoda, Decapoda, Isopoda, Thecostraca, and others. This dataset represents the most extensive DNA barcode library of the Crustacea in terms of species number to date. By using the Barcode of Life Data Systems (BOLD), unique BINs were identified for 198 (96.6%) of the analyzed species. Six species were characterized by two BINs (2.9%), and three BINs were found for the amphipod species Gammarus salinus Spooner, 1947 (0.4%). Intraspecific distances with values higher than 2.2% were revealed for 13 species (6.3%). Exceptionally high distances of up to 14.87% between two distinct but monophyletic clusters were found for the parasitic copepod Caligus elongatus Nordmann, 1832, supporting the results of previous studies that indicated the existence of an overlooked sea louse species. In contrast to these high distances, haplotype-sharing was observed for two decapod spider crab species, Macropodia parva Van Noort & Adema, 1985 and Macropodia rostrata (Linnaeus, 1761), underlining the need for a taxonomic revision of both species. Summarizing the results, our study confirms the application of DNA barcodes as highly effective identification system for the analyzed marine crustaceans of the North Sea and represents an important milestone for modern biodiversity assessment studies using barcode sequence

Taxonomy based on science is necessary for global conservation

Peer reviewe

Metagenomic characterization of swine slurry in a North American swine farm operation

Abstract Modern day large-scale, high-density farming environments are inherently susceptible to viral outbreaks, inadvertently creating conditions that favor increased pathogen transmission and potential zoonotic spread. Metagenomic sequencing has proven to be a useful tool for characterizing the microbial burden in both people, livestock, and environmental samples. International efforts have been successful at characterizing pathogens in commercial farming environments, especially swine farms, however it is unclear whether the full extent of microbial agents have been adequately captured or is representative of farms elsewhere. To augment international efforts we performed metagenomic next-generation sequencing on nine swine slurry and three environmental samples from a United States of America (U.S.A.) farm operation, characterized the microbial composition of slurry, and identified novel viruses. We assembled a remarkable total of 1792 viral genomes, of which 554 were novel/divergent. We assembled 1637 Picobirnavirus genome segments, of which 538 are novel. In addition, we discovered 10 new viruses belonging to a novel taxon: porcine Statoviruses; which have only been previously reported in human, macaques, mouse, and cows. We assembled 3 divergent Posaviruses and 3 swine Picornaviruses. In addition to viruses described, we found other eukaryotic genera such as Entamoeba and Blastocystis, and bacterial genera such as Listeria, Treponema, Peptoclostridium and Bordetella in the slurry. Of these, two species Entamoeba histolytica and Listeria monocytogenes known to cause human disease were detected. Further, antimicrobial resistance genes such as tetracycline and MLS (macrolide, lincosamide, streptogramin) were also identified. Metagenomic surveillance in swine fecal slurry has great potential for novel and antimicrobial resistant pathogen detection

Benchmarking global biodiversity of decapod crustaceans (Crustacea: Decapoda)

A new assessment of the global biodiversity of decapod Crustacea (to 31 December 2022) records 17,229 species in 2,550 genera and 203 families. These figures are derived from a well-curated dataset maintained on the online platform DecaNet, a subsidiary of the World Register of Marine Species (WoRMS). Distinct phases are recognised in the discovery process (as measured by species descriptions) corresponding to major historical and geopolitical time periods, with the current rate of species descriptions being more than three times higher than in the Victorian age of global exploration. Future trends are briefly explored, and it is recognised that a large number of species remain to be discovered and described