Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants

Conserved noncoding sequences (CNSs) in DNA are reliable pointers to regulatory elements controlling gene expression. Using a comparative genomics approach with four dicotyledonous plant species (Arabidopsis thaliana, papaya [Carica papaya], poplar [Populus trichocarpa], and grape [Vitis vinifera]), we detected hundreds of CNSs upstream of Arabidopsis genes. Distinct positioning, length, and enrichment for transcription factor binding sites suggest these CNSs play a functional role in transcriptional regulation. The enrichment of transcription factors within the set of genes associated with CNS is consistent with the hypothesis that together they form part of a conserved transcriptional network whose function is to regulate other transcription factors and control development. We identified a set of promoters where regulatory mechanisms are likely to be shared between the model organism Arabidopsis and other dicots, providing areas of focus for further research

Long gravitational-wave transients and associated detection strategies for a network of terrestrial interferometers

Searches for gravitational waves (GWs) traditionally focus on persistent sources (e.g., pulsars or the stochastic background) or on transients sources (e.g., compact binary inspirals or core-collapse supernovae), which last for time scales of milliseconds to seconds. We explore the possibility of long GW transients with unknown waveforms lasting from many seconds to weeks. We propose a novel analysis technique to bridge the gap between short O(s) “burst” analyses and persistent stochastic analyses. Our technique utilizes frequency-time maps of GW strain cross power between two spatially separated terrestrial GW detectors. The application of our cross power statistic to searches for GW transients is framed as a pattern recognition problem, and we discuss several pattern-recognition techniques. We demonstrate these techniques by recovering simulated GW signals in simulated detector noise. We also recover environmental noise artifacts, thereby demonstrating a novel technique for the identification of such artifacts in GW interferometers. We compare the efficiency of this framework to other techniques such as matched filtering

Invariant sets for discontinuous parabolic area-preserving torus maps

We analyze a class of piecewise linear parabolic maps on the torus, namely those obtained by considering a linear map with double eigenvalue one and taking modulo one in each component. We show that within this two parameter family of maps, the set of noninvertible maps is open and dense. For cases where the entries in the matrix are rational we show that the maximal invariant set has positive Lebesgue measure and we give bounds on the measure. For several examples we find expressions for the measure of the invariant set but we leave open the question as to whether there are parameters for which this measure is zero.Comment: 19 pages in Latex (with epsfig,amssymb,graphics) with 5 figures in eps; revised version: section 2 rewritten, new example and picture adde

Broadband analysis techniques for Herschel/HIFI spectral surveys of chemically rich star-forming regions

The Heterodyne Instrument for the Far Infrared (HIFI) aboard the Herschel Space Observatory has acquired high-resolution broadband molecular spectra of star-forming regions in a wavelength range that is mostly inaccessible from ground-based astronomical observatories. These spectral surveys provide new insight into the chemical composition and physical properties of molecular clouds. In this manuscript, we present initial results from the HIFI spectral survey of the Sagittarius B2(N) molecular cloud, which contains spectral features assigned to at least 40 different molecules in a range of physical environments. While extensive line blending is observed due to the chemical complexity of this region, reliable molecular line identifications can be made, down to the noise floor, due to the large number of transitions detected for each species in the 1.2 THz survey bandwidth. This allows for the extraction of new weakly emitting species from the line forest. These HIFI surveys will be an invaluable archival resource for future investigations into interstellar chemistry.Comment: 14 pages, 2 figures; accepted to the Journal of Molecular Spectroscop

Nonlocal observables and lightcone-averaging in relativistic thermodynamics

The unification of relativity and thermodynamics has been a subject of considerable debate over the last 100 years. The reasons for this are twofold: (i) Thermodynamic variables are nonlocal quantities and, thus, single out a preferred class of hyperplanes in spacetime. (ii) There exist different, seemingly equally plausible ways of defining heat and work in relativistic systems. These ambiguities led, for example, to various proposals for the Lorentz transformation law of temperature. Traditional 'isochronous' formulations of relativistic thermodynamics are neither theoretically satisfactory nor experimentally feasible. Here, we demonstrate how these deficiencies can be resolved by defining thermodynamic quantities with respect to the backward-lightcone of an observation event. This approach yields novel, testable predictions and allows for a straightforward-extension of thermodynamics to General Relativity. Our theoretical considerations are illustrated through three-dimensional relativistic many-body simulations.Comment: typos in Eqs. (12) and (14) corrected, minor additions in the tex

Spaceflight Standard Measures

No abstract availabl

Presolar He and Ne Isotopes in Single Circumstellar SiC Grains

Noble gas isotopes in presolar silicon carbide (SiC) dust grains from primitive meteorites provide, together with major element isotopic compositions, insight into the nucleosynthetic output of different types of evolved stars >4.5 Gyr ago. We report here new results from helium and neon isotopic analyses of single presolar SiC grains with sizes between 0.6 and 6.3 μm using an ultrahigh sensitivity mass spectrometer. These noble gas studies were complemented by an ion microprobe study (NanoSIMS) of Si, C, and N isotopic compositions of the same grains. About 40%, or 46 of the 110 grains analyzed, contain nucleosynthetic 22Ne and/or 4He from their parent stars above our mass spectrometer's detection limit. We discuss the possible stellar sources using isotopic ratios as constraints combined with new model predictions for low- to intermediate-mass (1.5, 2, 3, and 5 M☉) asymptotic giant branch (AGB) stars of different metallicities (1, 1/2, 1/3, and 1/6 Z☉). Most SiC grains are of the mainstream type and originated in low-mass AGB stars. We find a higher-than-expected percentage of A/B type grains, with some containing 22Ne and/or 4He. In addition, we find one noble gas-rich nova grain candidate, one supernova grain (X-type grain), and one 22Ne-rich X- or Z-type grain candidate

Pulse shape analysis of signals from BaF2 and CeF3 scintillators for neutron capture experiments

The scope of this work is to study the characteristics of BaF2 and CeF3 signals using fast digitizers, which allow the sampling of the signal at very high frequencies and the application of the fitting method for analysis of the recorded pulses. By this procedure particle identification and the reconstruction of pile-up events can be improved, while maintaining the energy and time-of-flight resolution as compared to traditional methods. The reliability of the technique and problems connected with data acquisition are discussed with respect to accurate measurements of neutron capture cross-sections

Measurement of the Ge 70 (n,γ) cross section up to 300 keV at the CERN n-TOF facility

©2019 American Physical Society.Neutron capture data on intermediate mass nuclei are of key importance to nucleosynthesis in the weak component of the slow neutron capture processes, which occurs in massive stars. The (n,γ) cross section on Ge70, which is mainly produced in the s process, was measured at the neutron time-of-flight facility n-TOF at CERN. Resonance capture kernels were determined up to 40 keV neutron energy and average cross sections up to 300 keV. Stellar cross sections were calculated from kT=5 keV to kT=100 keV and are in very good agreement with a previous measurement by Walter and Beer (1985) and recent evaluations. Average cross sections are in agreement with Walter and Beer (1985) over most of the neutron energy range covered, while they are systematically smaller for neutron energies above 150 keV. We have calculated isotopic abundances produced in s-process environments in a 25 solar mass star for two initial metallicities (below solar and close to solar). While the low metallicity model reproduces best the solar system germanium isotopic abundances, the close to solar model shows a good global match to solar system abundances in the range of mass numbers A=60-80.Peer reviewedFinal Published versio