The VVV-SkZ pipeline: an automatic PSF-fitting photometric pipeline for the VVV survey

We present the VVV-SkZ_pipeline, a DAOPHOT-based photometric pipeline, created to perform PSF-fitting photometry of "VISTA Variables in the V\'ia L\'actea" (VVV) ESO Public Survey data. The pipeline replaces the user avoiding repetitive interaction in all the operations, retaining all of the benefits of the power and accuracy of the DAOPHOT suite. The pipeline provides an astrometrized photometric catalog reliable up to more than 2 magnitudes brighter than the saturation limit, where other techniques fail. It also produces deeper and more accurate photometry. These achievements allow the VVV-SkZ_pipeline to produce data well anchored to the selected standard photometric system and analyze important phenomena (i.e. TRGB, RGB slope, HB morphology, RR Lyrae), that other methods are not able to manage.Comment: Accepted by RevMexAA for vol. 49, n.2, October 201

Étude de classes de noyaux adaptées à la simplification et à l'interprétation des modèles d'approximation. Une approche fonctionnelle et probabiliste.

Le thème général de cette thèse est celui de la construction de modèles permettantd approximer une fonction f lorsque la valeur de f(x) est connue pour un certainnombre de points x. Les modèles considérés ici, souvent appelés modèles de krigeage,peuvent être abordés suivant deux points de vue : celui de l approximation dans les espacesde Hilbert à noyaux reproduisants ou celui du conditionnement de processus gaussiens.Lorsque l on souhaite modéliser une fonction dépendant d une dizaine de variables, lenombre de points nécessaires pour la construction du modèle devient très important etles modèles obtenus sont difficilement interprétables. A partir de ce constat, nous avonscherché à construire des modèles simplifié en travaillant sur un objet clef des modèles dekrigeage : le noyau. Plus précisement, les approches suivantes sont étudiées : l utilisation denoyaux additifs pour la construction de modèles additifs et la décomposition des noyauxusuels en sous-noyaux pour la construction de modèles parcimonieux. Pour finir, nousproposons une classe de noyaux qui est naturellement adaptée à la représentation ANOVAdes modèles associés et à l analyse de sensibilité globale.The framework of this thesis is the approximation of functions for which thevalue is known at limited number of points. More precisely, we consider here the so-calledkriging models from two points of view : the approximation in reproducing kernel Hilbertspaces and the Gaussian Process regression.When the function to approximate depends on many variables, the required numberof points can become very large and the interpretation of the obtained models remainsdifficult because the model is still a high-dimensional function. In light of those remarks,the main part of our work adresses the issue of simplified models by studying a key conceptof kriging models, the kernel. More precisely, the following aspects are adressed: additivekernels for additive models and kernel decomposition for sparse modeling. Finally, wepropose a class of kernels that is well suited for functional ANOVA representation andglobal sensitivity analysis.ST ETIENNE-ENS des Mines (422182304) / SudocSudocFranceF

Replication and active partition of integrative and conjugative elements (ICEs) of the SXT/R391 family : the line between ICEs and conjugative plasmids is getting thinner

Integrative and Conjugative Elements (ICEs) of the SXT/R391 family disseminate multidrug resistance among pathogenic Gammaproteobacteria such as Vibrio cholerae. SXT/R391 ICEs are mobile genetic elements that reside in the chromosome of their host and eventually self-transfer to other bacteria by conjugation. Conjugative transfer of SXT/R391 ICEs involves a transient extrachromosomal circular plasmid-like form that is thought to be the substrate for single-stranded DNA translocation to the recipient cell through the mating pore. This plasmid-like form is thought to be non-replicative and is consequently expected to be highly unstable. We report here that the ICE R391 of Providencia rettgeri is impervious to loss upon cell division. We have investigated the genetic determinants contributing to R391 stability. First, we found that a hipAB-like toxin/antitoxin system improves R391 stability as its deletion resulted in a tenfold increase of R391 loss. Because hipAB is not a conserved feature of SXT/R391 ICEs, we sought for alternative and conserved stabilization mechanisms. We found that conjugation itself does not stabilize R391 as deletion of traG, which abolishes conjugative transfer, did not influence the frequency of loss. However, deletion of either the relaxase-encoding gene traI or the origin of transfer (oriT) led to a dramatic increase of R391 loss correlated with a copy number decrease of its plasmid-like form. This observation suggests that replication initiated at oriT by TraI is essential not only for conjugative transfer but also for stabilization of SXT/R391 ICEs. Finally, we uncovered srpMRC, a conserved locus coding for two proteins distantly related to the type II (actin-type ATPase) parMRC partitioning system of plasmid R1. R391 and plasmid stabilization assays demonstrate that srpMRC is active and contributes to reducing R391 loss. While partitioning systems usually stabilizes low-copy plasmids, srpMRC is the first to be reported that stabilizes a family of ICEs

The 2018 European heatwave led to stem dehydration but not to consistent growth reductions in forests

Heatwaves exert disproportionately strong and sometimes irreversible impacts on forest ecosystems. These impacts remain poorly understood at the tree and species level and across large spatial scales. Here, we investigate the effects of the record-breaking 2018 European heatwave on tree growth and tree water status using a collection of high-temporal resolution dendrometer data from 21 species across 53 sites. Relative to the two preceding years, annual stem growth was not consistently reduced by the 2018 heatwave but stems experienced twice the temporary shrinkage due to depletion of water reserves. Conifer species were less capable of rehydrating overnight than broadleaves across gradients of soil and atmospheric drought, suggesting less resilience toward transient stress. In particular, Norway spruce and Scots pine experienced extensive stem dehydration. Our high-resolution dendrometer network was suitable to disentangle the effects of a severe heatwave on tree growth and desiccation at large-spatial scales in situ, and provided insights on which species may be more vulnerable to climate extremes

The 2018 European heatwave led to stem dehydration but not to consistent growth reductions in forests

Publisher Copyright: © 2022, The Author(s).Heatwaves exert disproportionately strong and sometimes irreversible impacts on forest ecosystems. These impacts remain poorly understood at the tree and species level and across large spatial scales. Here, we investigate the effects of the record-breaking 2018 European heatwave on tree growth and tree water status using a collection of high-temporal resolution dendrometer data from 21 species across 53 sites. Relative to the two preceding years, annual stem growth was not consistently reduced by the 2018 heatwave but stems experienced twice the temporary shrinkage due to depletion of water reserves. Conifer species were less capable of rehydrating overnight than broadleaves across gradients of soil and atmospheric drought, suggesting less resilience toward transient stress. In particular, Norway spruce and Scots pine experienced extensive stem dehydration. Our high-resolution dendrometer network was suitable to disentangle the effects of a severe heatwave on tree growth and desiccation at large-spatial scales in situ, and provided insights on which species may be more vulnerable to climate extremes.Peer reviewe

On the mechanisms governing gas penetration into a tokamak plasma during a massive gas injection

A new 1D radial fluid code, IMAGINE, is used to simulate the penetration of gas into a tokamak plasma during a massive gas injection (MGI). The main result is that the gas is in general strongly braked as it reaches the plasma, due to mechanisms related to charge exchange and (to a smaller extent) recombination. As a result, only a fraction of the gas penetrates into the plasma. Also, a shock wave is created in the gas which propagates away from the plasma, braking and compressing the incoming gas. Simulation results are quantitatively consistent, at least in terms of orders of magnitude, with experimental data for a D 2 MGI into a JET Ohmic plasma. Simulations of MGI into the background plasma surrounding a runaway electron beam show that if the background electron density is too high, the gas may not penetrate, suggesting a possible explanation for the recent results of Reux et al in JET (2015 Nucl. Fusion 55 093013)

Velocity-space sensitivity of the time-of-flight neutron spectrometer at JET

The velocity-space sensitivities of fast-ion diagnostics are often described by so-called weight functions. Recently, we formulated weight functions showing the velocity-space sensitivity of the often dominant beam-target part of neutron energy spectra. These weight functions for neutron emission spectrometry (NES) are independent of the particular NES diagnostic. Here we apply these NES weight functions to the time-of-flight spectrometer TOFOR at JET. By taking the instrumental response function of TOFOR into account, we calculate time-of-flight NES weight functions that enable us to directly determine the velocity-space sensitivity of a given part of a measured time-of-flight spectrum from TOFOR

Modelling of the effect of ELMs on fuel retention at the bulk W divertor of JET

Effect of ELMs on fuel retention at the bulk W target of JET ITER-Like Wall was studied with multi-scale calculations. Plasma input parameters were taken from ELMy H-mode plasma experiment. The energetic intra-ELM fuel particles get implanted and create near-surface defects up to depths of few tens of nm, which act as the main fuel trapping sites during ELMs. Clustering of implantation-induced vacancies were found to take place. The incoming flux of inter-ELM plasma particles increases the different filling levels of trapped fuel in defects. The temperature increase of the W target during the pulse increases the fuel detrapping rate. The inter-ELM fuel particle flux refills the partially emptied trapping sites and fills new sites. This leads to a competing effect on the retention and release rates of the implanted particles. At high temperatures the main retention appeared in larger vacancy clusters due to increased clustering rate