449 research outputs found
Epigenomic profiling of newborns with isolated orofacial clefts reveals widespread DNA methylation changes and implicates metastable epiallele regions in disease risk.
Cleft lip with or without cleft palate (CL/P) is a common human birth defect whose etiologies remain largely unknown. Several studies have demonstrated that periconceptional supplementation of folic acid can reduce risk of CL/P in offspring. In this study, we tested the hypothesis that the preventive effect of folic acid is manifested through epigenetic modifications by determining whether DNA methylation changes are associated with CL/P. To more readily observe the potential effects of maternal folate on the offspring epigenome, we focused on births prior to mandatory dietary folate fortification in the United States (i.e. birth year 1997 or earlier). Genomic DNA methylation levels were assessed from archived newborn bloodspots in a 182-member case-control study using the Illumina® Human Beadchip 450K array. CL/P cases displayed striking epigenome-wide hypomethylation relative to controls: 63% of CpGs interrogated had lower methylation levels in case newborns, a trend which held up in racially stratified sub-groups. 28 CpG sites reached epigenome-wide significance and all were case-hypomethylated. The most significant CL/P-associated differentially methylated region encompassed the VTRNA2-1 gene, which was also hypomethylated in cases (FWER p = 0.014). This region has been previously characterized as a nutritionally-responsive, metastable epiallele and CL/P-associated methylation changes, in general, were greater at or near putative metastable epiallelic regions. Gene Set Enrichment Analysis of CL/P-associated DMRs showed an over-representation of genes involved in palate development such as WNT9B, MIR140 and LHX8. CL/P-associated DNA methylation changes may partly explain the mechanism by which orofacial clefts are responsive to maternal folate levels
Exact steady state solution of the Boltzmann equation: A driven 1-D inelastic Maxwell gas
The exact nonequilibrium steady state solution of the nonlinear Boltzmann
equation for a driven inelastic Maxwell model was obtained by Ben-Naim and
Krapivsky [Phys. Rev. E 61, R5 (2000)] in the form of an infinite product for
the Fourier transform of the distribution function . In this paper we
have inverted the Fourier transform to express in the form of an
infinite series of exponentially decaying terms. The dominant high energy tail
is exponential, , where and the amplitude is given in terms of a converging
sum. This is explicitly shown in the totally inelastic limit ()
and in the quasi-elastic limit (). In the latter case, the
distribution is dominated by a Maxwellian for a very wide range of velocities,
but a crossover from a Maxwellian to an exponential high energy tail exists for
velocities around a crossover velocity , where .
In this crossover region the distribution function is extremely small, .Comment: 11 pages, 4 figures; a table and a few references added; to be
published in PR
Surface and capillary transitions in an associating binary mixture model
We investigate the phase diagram of a two-component associating fluid mixture
in the presence of selectively adsorbing substrates. The mixture is
characterized by a bulk phase diagram which displays peculiar features such as
closed loops of immiscibility. The presence of the substrates may interfere the
physical mechanism involved in the appearance of these phase diagrams, leading
to an enhanced tendency to phase separate below the lower critical solution
point. Three different cases are considered: a planar solid surface in contact
with a bulk fluid, while the other two represent two models of porous systems,
namely a slit and an array on infinitely long parallel cylinders. We confirm
that surface transitions, as well as capillary transitions for a large
area/volume ratio, are stabilized in the one-phase region. Applicability of our
results to experiments reported in the literature is discussed.Comment: 12 two-column pages, 12 figures, accepted for publication in Physical
Review E; corrected versio
Search for lepton-flavor violation at HERA
A search for lepton-flavor-violating interactions and has been performed with the ZEUS detector using the entire HERA I
data sample, corresponding to an integrated luminosity of 130 pb^{-1}. The data
were taken at center-of-mass energies, , of 300 and 318 GeV. No
evidence of lepton-flavor violation was found, and constraints were derived on
leptoquarks (LQs) that could mediate such interactions. For LQ masses below
, limits were set on , where
is the coupling of the LQ to an electron and a
first-generation quark , and is the branching ratio of
the LQ to the final-state lepton ( or ) and a quark . For
LQ masses much larger than , limits were set on the four-fermion
interaction term for LQs that couple to an electron and a quark
and to a lepton and a quark , where and are
quark generation indices. Some of the limits are also applicable to
lepton-flavor-violating processes mediated by squarks in -Parity-violating
supersymmetric models. In some cases, especially when a higher-generation quark
is involved and for the process , the ZEUS limits are the most
stringent to date.Comment: 37 pages, 10 figures, Accepted by EPJC. References and 1 figure (Fig.
6) adde
Multijet production in neutral current deep inelastic scattering at HERA and determination of alpha_s
Multijet production rates in neutral current deep inelastic scattering have
been measured in the range of exchanged boson virtualities 10 < Q2 < 5000 GeV2.
The data were taken at the ep collider HERA with centre-of-mass energy sqrt(s)
= 318 GeV using the ZEUS detector and correspond to an integrated luminosity of
82.2 pb-1. Jets were identified in the Breit frame using the k_T cluster
algorithm in the longitudinally invariant inclusive mode. Measurements of
differential dijet and trijet cross sections are presented as functions of jet
transverse energy E_{T,B}{jet}, pseudorapidity eta_{LAB}{jet} and Q2 with
E_{T,B}{jet} > 5 GeV and -1 < eta_{LAB}{jet} < 2.5. Next-to-leading-order QCD
calculations describe the data well. The value of the strong coupling constant
alpha_s(M_Z), determined from the ratio of the trijet to dijet cross sections,
is alpha_s(M_Z) = 0.1179 pm 0.0013(stat.) {+0.0028}_{-0.0046}(exp.)
{+0.0064}_{-0.0046}(th.)Comment: 22 pages, 5 figure
Measurement of (anti)deuteron and (anti)proton production in DIS at HERA
The first observation of (anti)deuterons in deep inelastic scattering at HERA
has been made with the ZEUS detector at a centre-of-mass energy of 300--318 GeV
using an integrated luminosity of 120 pb-1. The measurement was performed in
the central rapidity region for transverse momentum per unit of mass in the
range 0.3<p_T/M<0.7. The particle rates have been extracted and interpreted in
terms of the coalescence model. The (anti)deuteron production yield is smaller
than the (anti)proton yield by approximately three orders of magnitude,
consistent with the world measurements.Comment: 26 pages, 9 figures, 5 tables, submitted to Nucl. Phys.
Photoproduction of mesons associated with a leading neutron
The photoproduction of mesons associated with a leading
neutron has been observed with the ZEUS detector in collisions at HERA
using an integrated luminosity of 80 pb. The neutron carries a large
fraction, {}, of the incoming proton beam energy and is detected at
very small production angles, { mrad}, an indication of
peripheral scattering. The meson is centrally produced with
pseudorapidity {
GeV}, which is large compared to the average transverse momentum of the neutron
of 0.22 GeV. The ratio of neutron-tagged to inclusive production is
in the photon-proton
center-of-mass energy range { GeV}. The data suggest that the
presence of a hard scale enhances the fraction of events with a leading neutron
in the final state.Comment: 28 pages, 4 figures, 2 table
Measurement of beauty production in deep inelastic scattering at HERA
The beauty production cross section for deep inelastic scattering events with
at least one hard jet in the Breit frame together with a muon has been
measured, for photon virtualities Q^2 > 2 GeV^2, with the ZEUS detector at HERA
using integrated luminosity of 72 pb^-1. The total visible cross section is
sigma_b-bbar (ep -> e jet mu X) = 40.9 +- 5.7 (stat.) +6.0 -4.4 (syst.) pb. The
next-to-leading order QCD prediction lies about 2.5 standard deviations below
the data. The differential cross sections are in general consistent with the
NLO QCD predictions; however at low values of Q^2, Bjorken x, and muon
transverse momentum, and high values of jet transverse energy and muon
pseudorapidity, the prediction is about two standard deviations below the data.Comment: 18 pages, 4 figure
Measurement of charm fragmentation ratios and fractions in photoproduction at HERA
The production of D^*+, D^0, D^+, D_s^+ and Lambda_c^+ charm hadrons and
their antiparticles in ep scattering at HERA was measured with the ZEUS
detector using an integrated luminosity of 79 pb^-1. The measurement has been
performed in the photoproduction regime with the exchanged-photon virtuality
Q^2 < 1 GeV^2 and for photon-proton centre-of-mass energies in the range 130 <
W < 300 GeV. The charm hadrons were reconstructed in the range of transverse
momentum p_T(D, Lambda_c) > 3.8 GeV and pseudorapidity |eta(D, Lambda_c)| <
1.6. The production cross sections were used to determine the ratio of neutral
and charged D-meson production rates, R_u/d, the strangeness-suppression
factor, gamma_s, and the fraction of charged D mesons produced in a vector
state, P_v^d. The measured R_u/d and gamma_s values agree with those obtained
in deep inelastic scattering and in e^+e^- annihilations. The measured P_v^d
value is smaller than, but consistent with, the previous measurements. The
fractions of c quarks hadronising as a particular charm hadron, f(c -> D,
Lambda_c), were derived in the given kinematic range. The measured open-charm
fragmentation fractions are consistent with previous results, although the
measured f(c -> D^*+) is smaller and f(c -> Lambda_c^+) is larger than those
obtained in e^+e^- annihilations. These results generally support the
hypothesis that fragmentation proceeds independently of the hard sub-process.Comment: 29 pages, 5 figures, 6 tables; minor text revision
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